Array 1 863886-864402 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058057.1 Escherichia fergusonii strain RHB02-C22 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 863886 29 100.0 32 ............................. GAGCATTATATTTATTCGACGCTGACAGGCTC 863947 29 100.0 32 ............................. GAGGCGTATCGCAGTGAATGAAATCGACCCAC 864008 29 100.0 32 ............................. ACACGGGCGCAAAAACAATTGAACGCGCCAAA 864069 29 96.6 32 ............................C GCGCAGGTGGACGGATTTGGACAACTGGAGAC 864130 29 96.6 32 ................T............ ATTTAAATCGCTATGCGCGTGATGTTATTAAC 864191 29 96.6 32 ...........................T. ACGACGACGGCACACGAGCGGTTAATCCCGAC 864252 29 96.6 32 .........A................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 864313 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 864374 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 95.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTCTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTATTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 879362-880916 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058057.1 Escherichia fergusonii strain RHB02-C22 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 879362 29 100.0 32 ............................. TTTACATCAATGAACAGATAGTTTTTACGCTG 879423 29 100.0 32 ............................. ATCATCATCACCGATGTGCATTCCGATAGGAT 879484 29 100.0 32 ............................. AGACTGGCGGCAGCGATAATAAATACATGAAA 879545 29 100.0 32 ............................. ATTCCCTGCTCGTAATACGCGTCGTATAGCGC 879606 29 100.0 33 ............................. TAGCGCTTTGCGGTGTCCTCCAGCGTGGTTTGC 879668 29 100.0 32 ............................. GTCGCGGTTGCAGTGCTGTCTTTCCCAGCTGA 879729 29 100.0 32 ............................. GTCAGTTGCCTGATTTCGCTGGCAAAACGTGG 879790 29 100.0 32 ............................. ACGTTAGTAAACAGCTCGCAGCACAACGCGGT 879851 29 100.0 32 ............................. CTATGAGGCTGAACGAAACGCCATCATGCTGG 879912 29 100.0 32 ............................. AGCAGGGCAAGGTTCGCCCGATGTACACCCTG 879973 29 100.0 33 ............................. CTGATTATTGCGCGTGAATTACTGGAGCATGGC 880035 29 100.0 32 ............................. AATCACTGCGCGCTCAGATTGCCGAGGTCACC 880096 29 100.0 32 ............................. GTTTCAGTTGTGATATTTGAAGCGGAGTTGAT 880157 29 100.0 32 ............................. AGCGAGGAACGACGGGATCTTATTGGGTTTGA 880218 29 100.0 32 ............................. AGGAAAACGGATGATGGAAACCCGTCGCCTGG 880279 29 100.0 32 ............................. AGCGCGAATTATCAATCATTCAAGCGATCGGT 880340 29 100.0 32 ............................. GGAAGCATTGCTTTTGCAGCGTCTTTCCGATC 880401 29 100.0 32 ............................. GCTAATGCAACGTGGTTTTCTGTGCTGGATAT 880462 29 96.6 32 .........A................... AATTTTACTGATTCAGCAGGGCAAATGAAATC 880523 29 96.6 32 ...........A................. ACGTTTGCCAGTAATTTGGCTCGTCATGCAAT 880584 29 100.0 32 ............................. GTTTTTGCTGCTGCCAGATTACCGAATATAAC 880645 29 100.0 32 ............................. TTTGGTAGGAAAAAATATCACTGGTATATCTA 880706 29 100.0 32 ............................. CGGATATCGTCGCCGGTGGGGCGCTCCCAACC 880767 29 100.0 32 ............................. CTGCTCATTGCCATTGCCCCAGCAATACCAGC 880828 29 100.0 32 ............................. GTAATGCACTCACCACGGTTACAACAGATATT 880889 28 86.2 0 ......................-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGGCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACATTGGGCGATATCGGTCACCGGGGGCGCGGCGGGTGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTCCTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAGTTTCAGACCTGGGGTGAGAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : CAACTCCCATTTTCAAACTCCTCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACATCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGGTCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //