Array 1 6-554 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000177.1 Fischerella thermalis WC341 NODE_425_length_20129_cov_28.366039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 6 37 100.0 38 ..................................... GCGACGACGAGCGTAGCTAACTCGACCATCCTGGAAGT 81 37 100.0 36 ..................................... CTGTGCAGTATTCTCTTCCCGGAGAAATCTGCACAC 154 37 100.0 34 ..................................... CCAGACCAGGTCTTCGGCTACAGTCTCCAGTCGA 225 37 100.0 36 ..................................... CGCTAGAGCAAGAGCCATACCACCGAGAAGCCGCGA 298 37 100.0 33 ..................................... GAGATAGGCGACATGCAAGTACTGTTTTGTATT 368 37 100.0 34 ..................................... GGGAGAGGTAATCTTCTCCGACACCGCCCCTAGG 439 37 100.0 42 ..................................... TCTATGGATCGTAGCATTCCTGACATCAAAGTAGGCGATCGC 518 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 8 37 100.0 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : ATACGG # Right flank : CGCCGAGGGAGGCTATGCGGCTCATCTGGGTCTTGAGTTGCAACTTCAATTAATCCCTATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGACCGACGTGCCACGAAGTATCTCGTGACCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAATGCAGCAACTCCATTTTATCCAGAAAGAAAGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACACGTGCTCTACATTTCCAACCGGATCTCCCTTGTTCGCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCAATCTCGCCAATGCGGTTAGCCGAGGACGTTGCTGTTGCAACTTCAATTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 2 818-1514 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000177.1 Fischerella thermalis WC341 NODE_425_length_20129_cov_28.366039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 818 37 100.0 35 ..................................... GAATGCAGCAACTCCATTTTATCCAGAAAGAAAGG 890 37 100.0 38 ..................................... ACGTGCTCTACATTTCCAACCGGATCTCCCTTGTTCGC 965 37 100.0 35 ..................................... CAATCTCGCCAATGCGGTTAGCCGAGGACGTTGCT 1037 37 100.0 40 ..................................... AAGATGATGTCGCACCTCCCTGCGCCGAGATCTTTATCGA 1114 37 100.0 33 ..................................... TGGCTGCTCCTTCCAGTAGGTGATAGCTAAAAG 1184 37 100.0 33 ..................................... GCCGACGTATTGCCAGAAACAAGCCCAATCCAA 1254 37 100.0 34 ..................................... CGTGTTTGACATTTGTCATTACTCCAACTAACGC 1325 37 100.0 42 ..................................... GCAGANNNNNNNNNNGAGCGATCGCCAGCCATTAGGCACACT 1404 37 100.0 37 ..................................... GCAGAGTGGACTCCCCGATGTAAGCCTTCCGGATTAG 1478 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 10 37 100.0 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CTATTAGGGATTGAAACGAGATAGGCGACATGCAAGTACTGTTTTGTATTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGGGAGAGGTAATCTTCTCCGACACCGCCCCTAGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCTATGGATCGTAGCATTCCTGACATCAAAGTAGGCGATCGCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCCGAGGGAGGCTATGCGGCTCATCTGGGTCTTGAGTTGCAACTTCAATTAATCCCTATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGACCGACGTGCCACGAAGTATCTCGTGACC # Right flank : CGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGGGTGTAAGTGCTTCCGAGTACTTATCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGGACGCTGAAGGGTGCTCCTCCCTGGAGGCACTCGGAGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAGCGTCGCGATAAATCCCCACTTGCGAGCGCCCACCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGCTCGAACAAGAGCCATACCACCGAGAAGCCGCGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [20.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 3 1753-2225 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000177.1 Fischerella thermalis WC341 NODE_425_length_20129_cov_28.366039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1753 37 100.0 39 ..................................... GGACGCTGAAGGGTGCTCCTCCCTGGAGGCACTCGGAGA 1829 37 100.0 36 ..................................... AGCGTCGCGATAAATCCCCACTTGCGAGCGCCCACC 1902 37 100.0 35 ..................................... CGCTCGAACAAGAGCCATACCACCGAGAAGCCGCG 1974 37 100.0 34 ..................................... AGGCACACTTTTTGGGCTTACTATAGGGAAATTC 2045 37 100.0 35 ..................................... TAATGTGGAATCGACTATCTGAGCGCCCTCCGACT 2117 37 100.0 35 ..................................... AATGCAAAAAAAAAGAGGCGCGATCGCCTCTTGGA 2189 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 100.0 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : AGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGTGTTTGACATTTGTCATTACTCCAACTAACGCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCAGANNNNNNNNNNGAGCGATCGCCAGCCATTAGGCACACTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCAGAGTGGACTCCCCGATGTAAGCCTTCCGGATTAGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGGGTGTAAGTGCTTCCGAGTACTTATC # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAATCTCCTTCGCCGAATGGCTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTGGTACGAGCGATCGCCGCTCCGATGCCGAAAGAGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAGCCAAGTTCCGGACTTGTTCGGGGTTGCCACGAGCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCCCTAGCGAGGCAATGCGACTCATCTGGGTCTTGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGTTCTTCCATCGCGCGAAGCACGCTCGCCTCGACGTAATCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTGGCGCGATCGCGAGCACACTAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 4 2370-4252 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000177.1 Fischerella thermalis WC341 NODE_425_length_20129_cov_28.366039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 2370 37 100.0 36 ..................................... CTGGTACGAGCGATCGCCGCTCCGATGCCGAAAGAG 2443 37 100.0 36 ..................................... AGCCAAGTTCCGGACTTGTTCGGGGTTGCCACGAGC 2516 37 100.0 35 ..................................... CCCTAGCGAGGCAATGCGACTCATCTGGGTCTTGA 2588 37 100.0 40 ..................................... GTTCTTCCATCGCGCGAAGCACGCTCGCCTCGACGTAATC 2665 37 100.0 39 ..................................... TGGCGCGATCGCGAGCACACTAGGATTCGATGGCTCTGG 2741 37 100.0 34 ..................................... GAGCGCCAGCACATGCCCGATTGCCTGCTCTATT 2812 37 100.0 43 ..................................... GACTTTCCGAGAGCGTTCCTCCTCCATACGGGAGATGAATGAG 2892 37 100.0 34 ..................................... CAGGTATCGCAGCACCCCTCTAAGACTGAGTAGC 2963 37 100.0 44 ..................................... NNNNNNNNNNTCTGGGGAGATCGAACTCCCCAGACGAGTCGGAG 3044 37 100.0 43 ..................................... GTCGGAAGAGCGCGATCGCCGCCAAGCAGTAGAGTGGTGATGG 3124 37 100.0 33 ..................................... CGCTACGCGGCGATTTTTCTAATAGGCATGTTT 3194 37 100.0 34 ..................................... GGGCAGGGTACTACCGGATCAGCATAGGAGGAAT 3265 37 100.0 36 ..................................... TCCCGGAGACCCACGGTTTTGAGACAGATAATGATG 3338 37 100.0 34 ..................................... TCCCGGAGACCCACAATTTTGAGACAGATAATGA 3409 37 100.0 34 ..................................... TCTACCGGGAATGACTCGCCCCGATACTTGTAGC 3480 37 100.0 37 ..................................... CGACCTGAGTGCCTCCGAGTAGAGCGCTACCCCCCGA 3554 37 100.0 35 ..................................... CAGGAATTTGACTCTGTGGAGCGCGATCGCTGCCT 3626 37 100.0 33 ..................................... CGGCACAATGACATCTCAAAGACAGTGCGCATC 3696 37 100.0 43 ..................................... GCGGTGGATGCTTACCCGATGCTCGCCTCGTGCTTTTCTTCGA 3776 37 100.0 44 ..................................... CNNNNNNNNNNATCGCCTCCAAGAACGCGCCCCACCCGATAGAA 3857 37 100.0 36 ..................................... CGGCATGGAGAAGAGGCTGGATTCTGCCTCCTTTGA 3930 37 100.0 35 ..................................... TGGGTATGGACTGGTTGGAGAAAACAGTCCCAGCT 4002 37 100.0 33 ..................................... TAAAATAGCTGCTTTGACAAGTCTTTAAAATAG 4072 37 100.0 33 ..................................... GTCTATCATTCGGCAGACTCCTCCAGCTTTCAC 4142 37 100.0 37 ..................................... TCCGCCATTTTTCCCGCTGAAGCAGCTCATCAGGAAT 4216 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 26 37 100.0 37 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TCGCGATAAATCCCCACTTGCGAGCGCCCACCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGCTCGAACAAGAGCCATACCACCGAGAAGCCGCGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAGGCACACTTTTTGGGCTTACTATAGGGAAATTCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTAATGTGGAATCGACTATCTGAGCGCCCTCCGACTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAATGCAAAAAAAAAGAGGCGCGATCGCCTCTTGGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAATCTCCTTCGCCGAATGGCT # Right flank : CCAATCGCGCCTGGTGGAGGCAGTAGCCCCCTGGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACTCGCCCAATAAAGATATGACCAACGAACGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTGGGGAATTTATTTCGTTGTGCCGGACAATCACGTAATTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGTCCATCGCGGCGAAATGCTAATCCCTGCTAAACGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTCCATTATCTCTCTATAATGGCTCTCGGCTTTATTGTTGCAACTTCAATTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 5 4515-5654 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000177.1 Fischerella thermalis WC341 NODE_425_length_20129_cov_28.366039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 4515 37 100.0 40 ..................................... CTGGGGAATTTATTTCGTTGTGCCGGACAATCACGTAATT 4592 37 100.0 34 ..................................... GTCCATCGCGGCGAAATGCTAATCCCTGCTAAAC 4663 37 100.0 36 ..................................... CTCCATTATCTCTCTATAATGGCTCTCGGCTTTATT 4736 37 100.0 34 ..................................... TGAAAGATATTTTAAAAAGAGATTACTACAAAAG 4807 37 100.0 39 ..................................... NNNNNNNNNNTAGTTTATCTCGCCAGTGCCAGAAGCGAT 4883 37 100.0 37 ..................................... GTGTGAACGCCTATCTGCGGGAGACATCATAAAGTGG 4957 37 100.0 33 ..................................... AAGGAACTCCTATCAGCTAAAATGAGCACGATG 5027 37 100.0 35 ..................................... AGTGGCTCCACCGTCGCCTTGGGTTCGTCCTGGAG 5099 37 100.0 39 ..................................... GCCTACTTTGAGATCGGCGTGGGGACTCTCTCTGGTGGG 5175 37 100.0 34 ..................................... GCTTCCATCTGCCGAACGGCTTGCCGGAGTGCCG 5246 37 100.0 45 ..................................... TTATCGCGACGATGACGCTCTCGCCGCTATTTATCTTTGCGCCAT 5328 37 100.0 32 ..................................... ATTTATCCTCCATCTTGGGAAGGCATCCTGGA 5397 37 100.0 37 ..................................... CAAAAAAACACCTGTAGACATTTGTCTACAACACAAA 5471 37 100.0 38 ..................................... GGATTCTAAGGAATCCTTTGGACTCTACATATCTTTTA 5546 37 100.0 35 ..................................... GAAATTTCTTCTACGCGCTGCACTCTCGCCATGGG 5618 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 16 37 100.0 37 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TTAATCCCTATTAGGGATTGAAACTAAAATAGCTGCTTTGACAAGTCTTTAAAATAGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGTCTATCATTCGGCAGACTCCTCCAGCTTTCACGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCCGCCATTTTTCCCGCTGAAGCAGCTCATCAGGAATGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCAATCGCGCCTGGTGGAGGCAGTAGCCCCCTGGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACTCGCCCAATAAAGATATGACCAACGAAC # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCCGCCCCCATCAGGAGAAGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCATANNNNNNNNNNTTATTTCTGGATTAGATACTTTTTCCACATACTCCTTAAGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGTAGTTGATCTCGCCACGCCCAACCGTGGCGATCTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGTAGTACTTGTGCCATTGGGTAACCTGCTCCAGAAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTACAGCTCTGCCGTATCGCACATAATCGGCGCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [28.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 6 5747-7159 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000177.1 Fischerella thermalis WC341 NODE_425_length_20129_cov_28.366039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================= ================== 5747 37 100.0 55 ..................................... TCATANNNNNNNNNNTTATTTCTGGATTAGATACTTTTTCCACATACTCCTTAAG 5839 37 100.0 35 ..................................... GTAGTTGATCTCGCCACGCCCAACCGTGGCGATCT 5911 37 100.0 36 ..................................... GTAGTACTTGTGCCATTGGGTAACCTGCTCCAGAAA 5984 37 100.0 33 ..................................... TTACAGCTCTGCCGTATCGCACATAATCGGCGC 6054 37 100.0 81 ..................................... TCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAGAGGGTACAAAGCCAGCT 6172 37 100.0 37 ..................................... GAGGTATTTTAGAAGTGACTTCAGGATCTTCAAGGTA 6246 37 100.0 35 ..................................... TCATATAGGGTAGGCGAGAAGGAACACAACCAGCT 6318 37 100.0 33 ..................................... AATGCTTCCCTCTCAAAACTTTGTCAGCATCTT 6388 37 100.0 36 ..................................... GCTTTGTTTCACAAAAGGCGATCGCGTCCCTAGTTG 6461 37 100.0 38 ..................................... GCACAGAATCAACAACACCATCATCGTTGGCATCGTAA 6536 37 100.0 37 ..................................... GCTCGGCGATGCGATTTTGTTGGAGTTGTAAAGAATT 6610 37 100.0 35 ..................................... TCCAGGAGGATCACCTCCTGGAGGATCGTCTCCAG 6682 37 100.0 37 ..................................... TTGTTGCTATTGGGATAGATGTATCTGGCATTCTTAG 6756 37 100.0 37 ..................................... ACCTTGGCATTGCCTTAGACAATAAGCCATACCTCCA 6830 37 100.0 37 ..................................... CACTCATTCCGGACTCTTCTGATTGCCTCTGGGAGTT 6904 37 100.0 33 ..................................... CGATAAGTTCTATAGTGTCCCAGAGTTCCCGGT 6974 37 100.0 39 ..................................... AACTCAGTGCTTCTTACTGATGCCCAAGATGTTCAGTGG 7050 37 100.0 36 ..................................... TCGGACGGAAACTTAGCACGACTCAGGATGCTGTTG 7123 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ================================================================================= ================== 19 37 99.9 40 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTATCGCGACGATGACGCTCTCGCCGCTATTTATCTTTGCGCCATGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATTTATCCTCCATCTTGGGAAGGCATCCTGGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCAAAAAAACACCTGTAGACATTTGTCTACAACACAAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGGATTCTAAGGAATCCTTTGGACTCTACATATCTTTTAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAAATTTCTTCTACGCGCTGCACTCTCGCCATGGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCCGCCCCCATCAGGAGAAG # Right flank : TCCGTAGTATGCATTTGACAAATTAAAGCTTACTGCTTGAGATTAGAACTTAAAGGCGTTGCAGAGAAAGCGGGATGATTTTGTTTTATCTTTTAATTGACAAAAACTCAATCCTTGGCGCTCTTGGCGTCTTGGTGGTTCATTATATCACCGCTACGAACAGACCAGCAAGACTGAAACTAGCAGTGGTAATTGCAAAAGTTCCCGTTTGCAATAAATTAACTAAAGTTCCTCCGATGACTGCACCCACAATTCCTAACAGCATTGTTGCCAGGATACCACCACCTTGGTAACCAGGATAAATTGCTTTGGCGATCGCGCCAGCCAACAAACCTAATACAATCCAAGCAAGAAGATTCATGATTCGTCTCCTTAATAGTTGCGAACAGAATATAGTTGAAGATAGAGTTTTAGAGATAATAAGGTTAGAGGTTTATAGACCCTAGACGTTCGCAAATTTCGACCGCTTTATCGAGGTTTTACCTCTCGTTATTTGCGAC # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 3249-2921 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000181.1 Fischerella thermalis WC341 NODE_517_length_3301_cov_24.552559, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3248 37 100.0 33 ..................................... AGGGTACTTACGCCCAGCTTTGTAGTGTATAGC 3178 37 100.0 40 ..................................... ATCTTGTCTGCCAGAAGACCTCTAGCAGAGTCCTTAGATG 3101 37 100.0 37 ..................................... TTTTTCGCTCCCAGAATCGAGAGGAAGCTCTACTTGT 3027 37 100.0 33 ..................................... TAATAGCCTCTGACACATCTTTAGACATCCCTT 2957 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 100.0 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : TACCAGTATTTGCATAATTCATCCCGCATTTATGCAACACCCCCTATTAGGGATTGAAACCAGATTCCTCTGCTCGGAGAATACTGCACAGATT # Right flank : CCTGCTCCAAGACCCCAGCCTGAAGCGATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCAGCAATTGGCTAGCTTTTTGTGCGTCGTGAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGATCCAGAGGTGAGGGTAGGACACAACAAAAATCCTTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTAAATTCGTCGCGTGCCAATATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 245-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000184.1 Fischerella thermalis WC341 NODE_541_length_63170_cov_29.926689, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 244 32 100.0 39 ................................ CTGTGCAGCCCGCGATCGCTCCACCGCGATCGCCGTTGC 173 32 100.0 37 ................................ TCGCTCCCAACGCCATTCGCCCAATTCGACTGGTTGC 104 32 100.0 40 ................................ CTGCGCTCTGTGGCGATCGCACACAGGCGAGATTTGTTGC 32 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================== ================== 4 32 100.0 39 AACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : ACTCATTAAACCTGATGAAGACAGCATCCGCTTCTATTTTCTTTGTGCTTGCTGTCAGGGTAAAATTGAGCGCATTGGTGGCGAAATGCCAATGGATACTACGGTGTTTTTTGCTTGATGATGGTGCAAACCAGTAGGTGTAGAAAAAAAGCAATCAATTTTTGGGGCTGAAATGCTGATTCTGTCTAAGTTAGAGACTGATTTGATGGCAAATGAGGTCTGCACCTTTTCTGTAAATCTTACCCTGACTAGATTTGAGCCATTTTATACTCGTTTGCTCTTGACAGTGCGATCGCTCAAACGCTATATTTAATCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTCCATTCTCGCACGCGATCGCGGGTGGCGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : C # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.88%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 3053-3738 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000176.1 Fischerella thermalis WC341 NODE_405_length_12289_cov_21.457157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3053 37 100.0 34 ..................................... TCGTGCGCGGCAGAGTATCTGCTCTGCGCCTCTT 3124 37 100.0 34 ..................................... GTACACAAATATACTCCCATGACCCAACCCTGCC 3195 37 100.0 38 ..................................... AATAATGCCCTCCCCTCTCTGGGCGAGGATGAGTTGGT 3270 37 100.0 37 ..................................... GGGGTCGCGACGAGCGAGAGCCACATTCCCTTGAGCT 3344 37 100.0 33 ..................................... GCAACTCGCGAGGAGTAGCTGCTTCCAGGGTGC 3414 37 100.0 34 ..................................... CTGTGCAGGCAGCGATCGCTCTGCATCGCGGTGC 3485 37 100.0 35 ..................................... AAAGTTGGACAATTTTTTCCACCCTCCTTATTGAG 3557 37 100.0 37 ..................................... GGCGACGACGACTTTCTACTGTGCATCCAAGCCGCGG 3631 37 100.0 34 ..................................... TGGTGATAGTGGCGATCGCATTGTTTGTCGCGAC 3702 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 100.0 35 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCTGACGGTACAGCAGCAAATATTCAACGCACAGACTCAATCAAAGATGGTGTGATTACAAACTCTTGGATGATCGCAACTGGTGATCCTATGGGTAAGCATAAAATAGAAGTTTATATTGGCGATCGCCGTATTGCTACTTTTGAGTTCGAGGTGGTTCCAGCTAAACGGCAAAAGCCAGATCCAAAAGCGTAGTTACAAGTTTTGCTATAGTCGATAAATAAAGATTAATCTCTCTTCAGCTTAGAGTTGGTGCAAACCTGTAGGTGTTTAAAAAAAGCAGTCAAATTTAATGGCTACAAGCCCTACCTGTTATGGCTTTGAACCCTTTTACACTCAGATAGAGGTTTGCACCAATTCTGAAAGTCTTACCAGCAAAGCTTTTGACCTATTTTTTCATAATTCATCTTGACACCTCGATGGCTGAAAAGCTATATTTTGTCCAGGTCTGCACCACTGAACCTTGAAAACCATATACAGCAAAGCTCCTGAATCTAGCT # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATAAGCCTATGACTATGCCCATTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCCNNNNNNNNNNACTGTCGGGGGAATTCTGCTCAGGATACAGGCTACGGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCAGCGGGAACATCCGCTCCCACGGGCAACCTTCCTCGGTTGCAACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 2 5701-6964 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000176.1 Fischerella thermalis WC341 NODE_405_length_12289_cov_21.457157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 5701 37 100.0 32 ..................................... CAGAATGCCTGCCGCGTTCCCGGAGCAATGAA 5770 37 100.0 33 ..................................... CCCACTTGGGCACCTCCCACCGCAGCCAGCGCC 5840 37 100.0 34 ..................................... CTCGCTTCTCTCGCCAGATGTACCTACGGCTCGC 5911 37 100.0 41 ..................................... GGGANNNNNNNNNNCCCAGCGCTGATTCCAGATTCTGCTGG 5989 37 100.0 33 ..................................... TTCTTGATAGAGGAGAAATTCCCGCTCCGATTC 6059 37 100.0 34 ..................................... GGATGCGACCTGCCATAGGCTATCTGCACACCTA 6130 37 100.0 36 ..................................... CTGGCGCTTCTCCGATCAGCAGATTGATTTGGAGCC 6203 37 100.0 33 ..................................... GGGAGCCTCGATAACAACTTGCCCCTCCCAATC 6273 37 100.0 39 ..................................... AGCGATCGCACCCAACTACTCGTTTGCGATCGCATCCAA 6349 37 100.0 35 ..................................... ACAACTGCCTCGATTTGATGATGTAGGCAGATTTG 6421 37 100.0 34 ..................................... GGGATCTCTGCCCCACCCATAGTCGATACGCAAT 6492 37 100.0 36 ..................................... CTGTGCAGTATTCTTCGGGCAGAGAAAGCAGTATTC 6565 37 100.0 38 ..................................... GCGATCGCTCCGAATCTCCAATGGGTGCGATCGCAAGC 6640 37 100.0 36 ..................................... GGAGGGCGGTGGCCATCGGCAGAGACCGGAGAAATG 6713 37 100.0 34 ..................................... GCCCTGGTGCGCGATGCCGGCATCGTCGAGCAGT 6784 37 100.0 35 ..................................... CTAGGAGCAGTATCCGAGAAGATACATTCTCCGGA 6856 37 100.0 35 ..................................... GGGTACCTCGTGGATAGGAGCGATGTAGCATGGAA 6928 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 18 37 100.0 35 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TTAGGGATTGAAACAATATCGCTTATATAGGCTGCACAGAACTTCCCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCCGATATCCTGGCGCATCTGGGGCGCGATCGCAGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCCAAAAGCATCAGCTCAGCCTCCTTTACCGACGGCGAGCGTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCATATCGACTCGCCAAAGAGATTTTGCCGTCATG # Right flank : CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACCTTTAAGGATGGTACTAAGTCTTACTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTTCCGCTCATCGCCACACCGACGAAGTCCGGAACCTGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCTTCCCGCTCTCTCTGATGTCCCCGTCCAGTATCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATCTATCGGGTTGGTTTTCCCTGGAAAACCGAAAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 3 7717-9631 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000176.1 Fischerella thermalis WC341 NODE_405_length_12289_cov_21.457157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================== ================== 7717 37 100.0 39 ..................................... CGCCAGTCTTGGGAACTCGGCGATGATGGCGGGATTCTG 7793 37 100.0 32 ..................................... CACCAAGGACGGCTTGAAGCTATCCGAGGCGG 7862 37 100.0 35 ..................................... GGAGTCCCAACTCAGATTGGCTTCCTGCTCTATCT 7934 37 100.0 106 ..................................... CAGAACCTCGCTCGCTCTGATTCCATAGTGACACGCTTCCCTCGCCAGGGCGATCGCTTGCAGATTGAAACCAGAACCTCGCTCGCTCTGATTCCATAGTTGGTGT 8077 37 100.0 41 ..................................... TTCGCCGACAAGCGGATAGACGACACCACCTGGCGGAGGAT 8155 37 100.0 37 ..................................... CATCAGCGATCGCTCCCCAAAAGCGACTGCCCAGCGA 8229 37 100.0 34 ..................................... CTGGTAGCTCTCGTACGTAGCTTTATCAAGAAGC 8300 37 100.0 36 ..................................... ACCGATGACGTACTAAGTACCACACTATCCGGATAT 8373 37 100.0 34 ..................................... AGACTGAGCGAGTGACTCCAGTGACAAACCCAGG 8444 37 100.0 34 ..................................... ATCAAGGAGATTTACCGACACGACTGGATTGCGA 8515 37 100.0 37 ..................................... GTACGGTACCTCTCCGCGAACGCCTCCGACCCTGGAC 8589 37 100.0 34 ..................................... CGGGTGCCGAAGCCAGAGCAGGGATTATTGCCAA 8660 37 100.0 34 ..................................... ATGCCGTCGATAAACCCTCCGGCAGGGACATTTC 8731 37 100.0 33 ..................................... GGCAGCAGATAGCTGATTATGTAAGGAGAACCA 8801 37 100.0 34 ..................................... AGGACTGCGATCGCTTTTTGGCGGAGATTCAACG 8872 37 100.0 36 ..................................... TGATATTGATAGCCACACTCAGCGCGCCCAATCCTT 8945 37 100.0 33 ..................................... TCGGCAGATCAGGGATGGGCTGGCAAAGAGCGA 9015 37 100.0 33 ..................................... TACGCGCTCCATTGCAAACAAAAAAGCCGGCTT 9085 37 100.0 42 ..................................... AGCTTGGCACCTCCCTCGGTTTTCAAGAATTCGCCGACAAAG 9164 37 100.0 36 ..................................... GCCATAATAGATCCAGGGCTAGCTACGGCTACTCAG 9237 37 100.0 37 ..................................... GCGTCCTCCGACCATGACCCATTCCCCACCGCGATCG 9311 37 100.0 34 ..................................... CAGTTTCCTCTCTCCGAAGAAATCTGCACAGATT 9382 37 100.0 35 ..................................... TGCCCGAATGCAGCGACATGGAAGACATGGTATTT 9454 37 100.0 33 ..................................... GAGCAGCAACTGCCAACTCCCCACGATCCCCTT 9524 37 100.0 34 ..................................... CAGAGGTCTGTTCAGTGTGCTGCGGTCTGCGATC 9595 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================== ================== 26 37 100.0 38 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : GGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTCTTCCCGCTCTCTCTGATGTCCCCGTCCAGTATCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATCTATCGGGTTGGTTTTCCCTGGAAAACCGAAAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAAGCTCCAGCAGATACCTCTGCATTGGCTGATAGC # Right flank : CCGAGGACGGACAAAGACCTTTTCCCTCGCTACCTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCGATGGGCACTGCCCTTCGGCTGATCGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCACAAACAAAGCCCAGCGGGCAGGC # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 4 10068-10326 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000176.1 Fischerella thermalis WC341 NODE_405_length_12289_cov_21.457157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =========================================== ================== 10068 38 100.0 30 ...................................... CACAAACAAAGCCCAGCGGGCAGGCTGGGC 10136 38 100.0 43 ...................................... GATGNNNNNNNNNNCGCAGTACGGAGGCAGATTCAGCGATCCA 10217 38 100.0 34 ...................................... GTGTTCTTGGGTTTTTGGACGATGACGGGAGTAG 10289 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =========================================== ================== 4 38 100.0 36 GGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CTGTTCAGTGTGCTGCGGTCTGCGATCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGAGGACGGACAAAGACCTTTTCCCTCGCTACCTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCGATGGGCACTGCCCTTCGGCTGATCG # Right flank : CGATGTAGAAGGGGCGGGGTACGGCAATGAACCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAATACAAATCCGACATGTTGATCCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCCCGGACTGTACCGTTATGGTCACTGTGAATCCCCATGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 5 10923-11912 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000176.1 Fischerella thermalis WC341 NODE_405_length_12289_cov_21.457157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 10923 37 100.0 38 ..................................... TGAGAGTGCGGAATCAAGATCCCATCCTCGGCTCTGGA 10998 37 100.0 38 ..................................... CGAAGTCGGATTCAGTAGGTGCCCAGCAGCTCGGCGGA 11073 37 100.0 35 ..................................... GCGCCTACCGTGATGGCGTGGAGATCGAGTGCTGA 11145 37 100.0 32 ..................................... GGTAGGCATTAATGCCCAAGCCCAGCAATACT 11214 37 100.0 34 ..................................... GGATCGAGAAGCTGTCGGCAGCCCAGCCCGTTAC 11285 37 100.0 36 ..................................... AAAGAGAAAGGCAAAGAGTACCAGCCGCCCATCTAC 11358 37 100.0 33 ..................................... TACGCACCCCAACAGCGATCGCACCCAACTACT 11428 37 100.0 33 ..................................... ATCAACGGAGACCGTATGACGACTGCTCCTGAG 11498 37 100.0 38 ..................................... AGGACTCTGGTGGGAATCCTACCGAATCTTGCAAGAGT 11573 37 100.0 36 ..................................... TCCGCTTCAGATGCTGGCGCGATCGCACTCAAGCCT 11646 37 100.0 34 ..................................... ACGGATTACTGGCGATCGCATCCCAGATCCCCCA 11717 37 100.0 49 ..................................... CGAANNNNNNNNNNAAGCTACATCGGGGAGTCCAGCCTGCCGCCATCCG 11803 37 100.0 36 ..................................... CGTAGAGATTGGGCGGCAGGCAGGGGTGGGACATGG 11876 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================= ================== 14 37 100.0 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAATACAAATCCGACATGTTGATCCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCCCGGACTGTACCGTTATGGTCACTGTGAATCCCCATGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCCGGGCAGCTCGTCCGGCAAACGCCCGTGGTG # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGAATTGCTCCAAGGCTGGGTGAATTACCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTGAATCCCGGAAATGCCTTTGAGGCAGAGTCGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAAATCACGACCGAAGAGGGGCGGCAACGCGTATAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAAAGCTCATCCACGCTCCTACCCTCTCCGGGTGTTGCATAAATGCGGGATGAATTATGCAAATACTGGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [16.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 6 12084-12262 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000176.1 Fischerella thermalis WC341 NODE_405_length_12289_cov_21.457157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 12084 37 100.0 34 ..................................... CTGAATCCCGGAAATGCCTTTGAGGCAGAGTCGG 12155 37 100.0 34 ..................................... AAATCACGACCGAAGAGGGGCGGCAACGCGTATA 12226 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 3 37 100.0 34 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : AATTAATCCCTATTAGGGATTGAAACTCCGCTTCAGATGCTGGCGCGATCGCACTCAAGCCTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACACGGATTACTGGCGATCGCATCCCAGATCCCCCAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGAANNNNNNNNNNAAGCTACATCGGGGAGTCCAGCCTGCCGCCATCCGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGTAGAGATTGGGCGGCAGGCAGGGGTGGGACATGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGAATTGCTCCAAGGCTGGGTGAATTACC # Right flank : AAAGCTCATCCACGCTCCTACCCTCTCCGGGTGTTGCATAAATGCGGGATGAATTATGCAAATACTGGT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 20092-21540 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000185.1 Fischerella thermalis WC341 NODE_569_length_27388_cov_26.842485, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 20092 37 100.0 35 ..................................... GACGATGTAGCATGGTAGTATTTGTGCCACTGGAT 20164 37 100.0 43 ..................................... GGAATGCCAATCCTCTCCCCGGCACGTGGTATTTCTTGTACAG 20244 37 100.0 31 ..................................... CAAACTTATTCGCGACTATCCAACTGGATGC 20312 37 100.0 39 ..................................... ACATCATCTCTAATCTAGCACTCATACACGGATCTGGCA 20388 37 100.0 34 ..................................... GCTTTGCCGGGCAATACTTGCCTCCGGAACTCCC 20459 37 97.3 45 ....................................N NNNNNNNNNTACCTTACGGAGAATTAACCATGGACATCATAAGAT 20541 37 100.0 34 ..................................... TACGCGCTTTGGATGGCTTCCCGGCGAAGCGCGC 20612 37 100.0 41 ..................................... GTAGACGATTCTAGAGGGGTGTGGAGAGAGAACATTCGATT 20690 37 100.0 45 ..................................... CTCNNNNNNNNNNGCCCCCACCAGCCCAGCCAGCCCGGATTGGGC 20772 37 100.0 36 ..................................... CTATAAGGATCTGGAAGAGCAGCAAACCCGCTACTA 20845 37 100.0 33 ..................................... GGGCAGGTAATCTGGCGGGCAATCCCCTTGCAG 20915 37 100.0 49 ..................................... TTGATACGCAGAGAAGGGAGAGATGCCGAAGTATGAGATCGACACGAAG 21001 37 100.0 30 ..................................... TTGATACGGCATTTTCATGGGATGCAAACA 21068 37 100.0 40 ..................................... AAGAAATCATTGCGTTGTTCGGCGATCGCTATTCAGAAGA 21145 37 100.0 37 ..................................... CCCAGCGCCAGCCAAGCCGGCAGACCGACGAGCGATC 21219 37 100.0 37 ..................................... ATCTCCACGAATTGCTCCGTGGAAAAACCACCCACCA 21293 37 100.0 35 ..................................... CCCGGTGGCTCAACAGAATACCGCCCCAGACCAAA 21365 37 100.0 32 ..................................... CAGCTTCCTGGCGGAGGCTGGAATGCGATCGC 21434 37 100.0 33 ..................................... GATCCACGAGAGCTAAAGATTATCCTGCCGAAC 21504 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================= ================== 20 37 99.9 37 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : TACCCCTACTTCTGTCCATCCCAGTCCAAACATAAGTGTCTCCCGTGAAAAACTCTACTTAAAATATAGTAGGGTGGGGATGTATGGATGATGTTGTGATTTTATTTGGGGTGTGTGGTTGAGTATCTTTTTTGAACCACAAAGCCACAAAGACACAAAGAAAAATCGATTTTGAAGTCCTAGTGTTATGGCGATCGCCCTAGGCTACTTAGGCTTGATTGGTGCAAACCTGTAGGTGTTTTTTGGAGCAGGTGAATTTTAATCGCTGGAAGCCCTACCAGTTCTGCTTTTGAATGCTTCTAAGTCCAAAAGGGGTTTGCACCAATTGTGAAATGCTTGCCAGACAAGGTTTTGAGCCTATTTTTTCTTCTCCGCCCTTGACATTCCGATGGCTGAAACGCTATATTTACTCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAANNNNNNNNNNCTGGGAAACCGAAAAGTTTGACAGGATATGATTACAAA # Right flank : CCCCGGAGCCTACCAGACACTCGTGTGCCATTTTTTCTCGGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAACTGGAGAAGATGGCACCCCAATGCAGGAAAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTTGCGGGGAGTTGGGCGGGGATCCTCGGTCAGGGAGATCAGGTCTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCCCACCAAGCTTCCGTTCCAGCGCGTCGAGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGAAGGATCGGGAGGGCTACACCATCGAGGATGGCAGTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 2 21811-22222 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000185.1 Fischerella thermalis WC341 NODE_569_length_27388_cov_26.842485, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 21811 37 100.0 46 ..................................... TTTGCGGGGAGTTGGGCGGGGATCCTCGGTCAGGGAGATCAGGTCT 21894 37 100.0 32 ..................................... CCCCACCAAGCTTCCGTTCCAGCGCGTCGAGG 21963 37 100.0 36 ..................................... GGAAGGATCGGGAGGGCTACACCATCGAGGATGGCA 22036 37 100.0 34 ..................................... CGATGGGTGAGATCAAGTCTGAATTGAACAACAT 22107 37 100.0 42 ..................................... CCGATGGTGGCTAGCTGCCATCCCTCATCTACCATCTCGATG 22186 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 6 37 100.0 38 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCCTATTAGGGATTGAAACCCCGGTGGCTCAACAGAATACCGCCCCAGACCAAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCAGCTTCCTGGCGGAGGCTGGAATGCGATCGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGATCCACGAGAGCTAAAGATTATCCTGCCGAACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCCGGAGCCTACCAGACACTCGTGTGCCATTTTTTCTCGGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAACTGGAGAAGATGGCACCCCAATGCAGGAAAG # Right flank : CCCCATGCGCGGGATGAGATCATCTCTGCTTGGGGCGATCGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGANNNNNNNNNNCGGGGGCAGGCAGAGTGGTCGCCTAGAGAAAATCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCAGATTGGGCTTGGAACAGAAAGACCAGTATCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCATCGTGCAGGAAAATCGCCACACGCCCATGCGAGCCACTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGGCGTGATCAAGAGGTAGCGAATGTTCGCAGCACGGCAGTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACATGGGAGTATATCTTGTGTACCAGAAAAATGATATGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCAGTATTCTTTCCAGAGAGACTATTGCACACTTTTGTTGCAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 3 23217-23829 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000185.1 Fischerella thermalis WC341 NODE_569_length_27388_cov_26.842485, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 23217 37 100.0 33 ..................................... ACTCTGGGGGAGCTTCGAGGCATGGATTGGCAG 23287 37 100.0 40 ..................................... TTATCGCATTTCCGCTCCGATGCGATACCCATTCGGGCTG 23364 37 100.0 36 ..................................... CGAACAGCTGCTGGATATCGGCATCCACTCAGCCGA 23437 37 100.0 33 ..................................... TCCGGCACGCTCCGAAGAGTACGCGCACAAAGA 23507 37 100.0 34 ..................................... GACTTCGTATCGCGGGTTGCGGAGGAGGGAAGAA 23578 37 100.0 35 ..................................... AGCCAGCATCTTCCGGTACCTGTCAGGCAGTCAAG 23650 37 100.0 35 ..................................... GGGGACGATGACTTTCTACTGTGCATACACTCGGC 23722 37 100.0 34 ..................................... CGCCCCACATCGCAGAGTACGCGAGCAAGTGCTA 23793 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 100.0 35 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CAACTTAAATTAATCCCTATTAGGGATTGAAACCATGCCTCGGTGGGATTGCGGCGGGCTTCGCACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCATGGAGGAGGTGATACAGTGGCATCAATATTATGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTCTCTGAGCGGGCTACAAACCAAAGACAACCCGGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTCTCCGGTCGGAGGATAGCGTACTCTGCGAGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCAGAATGGCACCATCATCTCCAGCCTGCCTCTGAGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTTTTGGGAGTAAATGGTTATCGGGTGTTCGGTTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTTANNNNNNNNNNTCCTTGGCTGTACATACCTACTCTAG # Right flank : CGATCAGGCTCAGATCCACGGCGTGGATCAAGCCGTGGACGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGNNNNNNNNNNCCCGAGAACTGCCAACCCCGACTCGTAGCAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCCATAGATCTCCGAGCAGCGATCGCGCGCTCGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGACGCGCTTCCCTCGCCAGGGCGATCGCTTGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACACCATGCTTCTTCTGATAATCCGCGATCGCCTTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCATCATCCGGCAATGGCGGCGATCACTCGCAGCCATCCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCGACCGCTTGGGCTACCTGCTCTCGGCTCAAGGGAGGTTGCAACTTAAATTAATCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 4 25490-25963 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000185.1 Fischerella thermalis WC341 NODE_569_length_27388_cov_26.842485, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 25490 37 100.0 35 ..................................... GTGATAAAGGTCGAGGAATTGGGATACTCTTCTCA 25562 37 100.0 34 ..................................... CTCTTCCATTCCTTGTCGAATGGCAGCCAAAGGG 25633 37 100.0 35 ..................................... GCGCTTATGAAAGTAGTTGTAGATTCTTTTTACTG 25705 37 100.0 35 ..................................... CGATGTGGGCGGAGACGCATACGCCAGTCCGGTTG 25777 37 100.0 38 ..................................... TCCGACAACTCCTGTGGGTCTCCGACAACTCTGTTAAA 25852 37 100.0 38 ..................................... AGCACTGCGCCGACCCGCTTGGGCATCTCCGTCTCGCC 25927 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 100.0 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : GATTGAAACCTAAGCGGCTAGCCAGTACTGCTTGTTTGGCGAAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTCCGGCGATCGCGCGGTGGATCCCGACTCGGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCGGCTCGATCACGGACTCGACTTCGTCTTCGTCGACGGGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCATTCCTAATCGGTCAGCAGCCCAGCATCCCGGAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAGTTGCTTCGCCGGGCAGTATCTGCCGCCAGAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCGATCGCACCCCCACATCTGCGC # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCTGGCGGTAATCCGCGAGGGTGTAATGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGATTAGACATTTTTACTTACTCCTATCTTTTTCAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTAGGATCTTTGTTTTTTCTTGGCAACAAGGCGAGTTAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCCAAACAAAGAGATGGAGAGACAGGAACAACAAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [13.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 5 26559-27192 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000185.1 Fischerella thermalis WC341 NODE_569_length_27388_cov_26.842485, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================== ================== 26559 37 100.0 36 ..................................... TTGAGCTGGTCAGCGCCACCGTTGCCGTTTTGGGTG 26632 37 100.0 36 ..................................... CCTCTGCCTCATAGCAGTCTATACAAAGTTGTATCT 26705 37 100.0 34 ..................................... AACCCTACTTCCATAGAACTTATCCCTAGTTTCC 26776 37 100.0 40 ..................................... AATAATGTAGTGATACGAGTGGTGGGGGCGAATGACCAAG 26853 37 100.0 34 ..................................... AGCCAATGCGAATGAGATAGATATCGTGCTTGAT 26924 37 100.0 35 ..................................... GTCTAAGACCCATTACACGGGAATCCTGGCGCTGG 26996 37 100.0 35 ..................................... CCGGCAACGAGCCTCACGGCGCACCACCGCAAAAA 27068 37 97.3 51 ....................................N NNNNNNNNNCCCGCGGGATAGCTGGTGTCCGGGTTCCCCTCGCGCTTGGAG 27156 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================================== ================== 9 37 99.7 38 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCTGGCGGTAATCCGCGAGGGTGTAATGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGATTAGACATTTTTACTTACTCCTATCTTTTTCAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTAGGATCTTTGTTTTTTCTTGGCAACAAGGCGAGTTAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCCAAACAAAGAGATGGAGAGACAGGAACAACAAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCTCAATGTCCTGAAGAAATTCAGGGA # Right flank : AGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATACTCTCAGCGCCGGAGGGATTGAGTTGCAACTTAAATTAATCCCTATTAGGGGCGTTGCATAATAGAGGGATGAATTGAGGTTATCTACTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 4381-3824 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000192.1 Fischerella thermalis WC341 NODE_849_length_8961_cov_23.168842, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ========================================== ================== 4380 38 100.0 34 ...................................... GAATTACGAAAAGCTTCACCAAAATTCTTCACAA 4308 38 100.0 35 ...................................... CTTCCTGTTCAAGAGTTATTCCGAAGCCGCTTGCA 4235 38 97.4 42 A..................................... CACTCATCCAACGCTCGATTATCTGCTGTTGTTCNNNNNNNN 4155 38 94.7 33 NN.................................... AATATCTCGACTCCAGACCAGTTCTCAGCAACA 4084 38 100.0 41 ...................................... GGCGGGATGTATCCAGCAGGATAGGTTAGCCTCTGCTCTGG 4005 38 100.0 33 ...................................... GTAAGACAGGAAGAGAAAAGGATTTGCGCAGAG 3934 38 100.0 35 ...................................... TACAAAATGCGATCGCACCCCTATCGCACCCATTC 3861 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ========================================== ================== 8 38 99.0 36 GGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : ACCCGGAATTGGAGCAAATAGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCGCGGGAACTTTTGATGGAACAAGCTACCCTGCCCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCATAGGCATAAAAAAAGAGCGATCGCTCTTAAGTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACATTAATGAAGCTATGGGTCGAAAAATCTTTTCAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTAAATTCTGATGTTGTAAAGCTACTTTCGCCACTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGG # Right flank : GGGGATGAAGGATCCCTATCTTTCCCCTACTNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTATGCCCACCTCGTAGACACTACCTACTTCATNNNNNNNNNNATTGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTCGTAGATAATTCTGCCTTGTTCCATAATATCACGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCATTTACTCAGCCTGAGTTATTCGATTGGAAGAAGTTGGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCTAATAACATTACTGCGCGTGCAAGAGTTGGTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTTTGAGCAAGACATCCTGGTTAGTAAACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 2 8461-7980 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000192.1 Fischerella thermalis WC341 NODE_849_length_8961_cov_23.168842, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 8460 37 100.0 35 ..................................... GATCCCGCGGAGATCGACTCTGACCGGAACAATAA 8388 37 100.0 40 ..................................... TCCCTTGCTGCGCAAGGGTTTTCGGCGTTTTAAAAGAGTT 8311 37 100.0 33 ..................................... AGCCAGCGCGCTCAGAGGCAGGCTGGAAACGAC 8241 37 100.0 35 ..................................... GTGGTGACTCGGACTACCTCGAATCTGGCGAAGCG 8169 37 100.0 34 ..................................... CTTCGCGAGTTTCCCCGAACTGCTCGATTCCCGG 8098 37 100.0 45 ..................................... TCCCACCGTGTAGTGGCACTCCCATACCCAGCCAGAAGTTCGGAG 8016 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 7 37 100.0 37 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : GTCGTTCCCCGGCGTTGCGCGAAGCTCCAGCAGATATCTCNNNNNNNNNNTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACACAGAAAAGTTCTTTTCGAGAGACTGACATGCCGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCGGTGCCCAGAGAGGTGGGATGAAGTCTGGGTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCGCCAGCCAGCCAAATCAGCGACAGGATGTCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCGAAGAATAGCGATCGCTGCCAGATTCTGACCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTATCGATCAGGCAGGAAGACAGCAGCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACACTTGGGCACAAGTCACGACCGGCGACTGCCGAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAATATCGCTTATATAGGCGAAATCTTCCGCCCGGAGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCCAGGAGAGCAAACCCGACCCCGACGAAGAATACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACATTCCGCTCCTCCGAGATGCCCTGAATCGGCGAGGTTGCAACTTAAATTAATCCCTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [21.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 3 9000-8666 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000192.1 Fischerella thermalis WC341 NODE_849_length_8961_cov_23.168842, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================== ================== 8999 37 100.0 51 ..................................... TGGTCGTTCCCCGGCGTTGCGCGAAGCTCCAGCAGATATCTCNNNNNNNNN 8911 37 97.3 35 N.................................... ACAGAAAAGTTCTTTTCGAGAGACTGACATGCCGA 8839 37 100.0 32 ..................................... CGGTGCCCAGAGAGGTGGGATGAAGTCTGGGT 8770 37 100.0 31 ..................................... CGCCAGCCAGCCAAATCAGCGACAGGATGTC 8702 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================================== ================== 5 37 99.5 38 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : ATA # Right flank : CGAAGAATAGCGATCGCTGCCAGATTCTGACCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGATCCCGCGGAGATCGACTCTGACCGGAACAATAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTCCCTTGCTGCGCAAGGGTTTTCGGCGTTTTAAAAGAGTTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAGCCAGCGCGCTCAGAGGCAGGCTGGAAACGACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGTGGTGACTCGGACTACCTCGAATCTGGCGAAGCGGTTG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 1 23492-23672 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000017.1 Fischerella thermalis WC341 NODE_17_length_120222_cov_33.936451, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 23492 36 100.0 37 .................................... AAACCATCAACGACGGCAACACACCAAACGAAACCAC 23565 36 100.0 36 .................................... TCTGCGTGGGCCATGCTTTTGATTGGCTCCGCCTGT 23637 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 100.0 37 CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Left flank : TGTAATATCTAATTCTCGGCTATATCTAAACAATAGTTCTGGCGAACAGTTACTAAAGAACAGCTAGGATTAGCATCACCCTGCTCTGGAATTCTACTCATTCCCTGTAAGCTTTGCGGCTTTGCAATAAAGAAGCCTACAAAATAATTTTGTACTGTCATTAGTTAATTTAAAATGCGGATGAAAGGACTTGAACCTTCACGCCTCGCGGCACTAGAACCTAAATCTAGCGCGTCTGCCAATTCCGCCACATCCGCATCAGTTCCTTATCATAGCATAAAAGTTGTCTAGAGCAATAATTTTTACGAATTAAGAGCAACTACCGAAGTTCAGCCCAAATTCTGCAAATGCCTATTTTTGTGTTGTGAACTTCGGTTGTTTAGTACATAAGGGTTTTAGGCTTTTTGTTTGGAGGAATTGAGATGTTTTTGTCTGTAAATTATCTGAACTTCGGAAATCGGCTCTGGAAATCTTACTGGGTAACGGTTTAAAATAGGACT # Right flank : CTGAATGGAAACAATGGGAACCTAAATTACACCGACACGAGGTAATCGATGCTTGAATCCGCAGAGAATTTCCCAAGAAATTGTGTTTAGTTGATTTGCCCAATCATCAGCGGAGATTTGTTGTTTGCCATCTTGACCTAGTAGGGTGACTACCTCACCTTCTTGTATATCTGGTAAGGCACTGATATCTACCATCAGTTGATCCATTGTAATTGCGCCGATCTGTTGTACTCTTTGACCACGAATTAATACCTGCATTTTGTTGGAAAGATTGCGTGGAACACCATCGGCATAACCAATGCCAACAACAGCAATTCGCATTTCTTGCTTGGCAATAAATTGATGACTGTAACTCACACCAGTCCCAGCAGCAATGGTTTTGACTTGGGTGACTCTGGCCCTGACTTGCAAAACAGGTTTCAGGTTAATTTGCGATCGCAAATGTGTGGCTGGGTAAAGTCCGTAAATGAGTAAACCTGCACGCACCATATCATAGTGTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 13894-14664 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000193.1 Fischerella thermalis WC341 NODE_880_length_45361_cov_27.666233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 13894 37 100.0 35 ..................................... AACCAGAGCGATCGCTAGCTCTAAAAACAGAGCGT 13966 37 100.0 35 ..................................... CACGATCGAAGATGGCATCCTCGCGACCGAGGAAG 14038 37 100.0 42 ..................................... CNNNNNNNNNNGTATCTCCAGCGGGTACACATTCTACGGCGA 14117 37 100.0 33 ..................................... CACCCTGGCTATCAACCGCGATCGCTGGCTAAG 14187 37 100.0 31 ..................................... CGACCGCTTGGGCTACCTGCTCCCGGCTTAA 14255 37 100.0 40 ..................................... GGATGCGATCGCGCCAGCGTGCCGGATGGCATTCGCTGAG 14332 37 100.0 41 ..................................... TGCGACATAGACTGACCATCCGACCAGGAATAGCAAGAAGT 14410 37 100.0 37 ..................................... GTAAGCAAGACCCACACATTTTTTCTCGCCTCTTAGC 14484 37 100.0 35 ..................................... TATCTCCATACTTTACTCTCCTAGAGCTTCGATTT 14556 37 100.0 35 ..................................... TTGGGGTCGGTGGCGGCGAAAGCCAGCTGCCCGGA 14628 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 11 37 100.0 36 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : GGTGGTGTGGAAGCAACGCCAAAAGTCTGGGATCTAGCCGCTGCTTGGGTAATAGTTAAGGCTGCGGGAGGAAGTTGGATCTCACTCAACTCAGAACCTTTTGCTTTATCTGCTGGTGTTGATTATAGCGATCGCTCTTTCCCCACTTTGGTTGTCAGTCGTCCAGAATTGGTGTCTACATTTAAGCCATATTTGGAAAATTTAAAGATTTGAACTTTGGCACTCTCCAAGTTGCTTGATTGACTTTATGGTGCAGATGGGTAGGTGTAGAAATCAGTTAGCCCATAAAAAGTACCTTAATCCCTGTGACAGCAATAGTTTCATCGATTAAGTAGCGAAAATAGGTCTGCACCAAGAGCAAAACGCTTACTATACAAAGCTTTCAGGCTGAAATTTTGAGAGGCTCTCTTGTCACCTAATGGCTGAAATGATATTATGATGACAGGTTTGCACCACTGTACCTTGAAAACTAAATACTGTAAGGGTTTAAGTTTGTAGCG # Right flank : CCGACTCTCCGCCTTTTTTTTTGTGCGATCGCGCGTTGAAATCAACTAAAATCCCTATCAGGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCTTGATCGATATGCTCGTTCCTATACGAAGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGCCTCGACCCGGCACCCGCGCCAAGGCGATCGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACACGGAGCAATTTCTGAAGGCGGGCAAGTCGTTGGAAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTAGGGCAGAGCGAGCAGCTGCTGCCGCAGAGGCAAAGGGAGTTGAAATCAACTAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 14928-16900 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000193.1 Fischerella thermalis WC341 NODE_880_length_45361_cov_27.666233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================= ================== 14928 37 100.0 32 ..................................... GCCTCGACCCGGCACCCGCGCCAAGGCGATCG 14997 37 100.0 37 ..................................... ACGGAGCAATTTCTGAAGGCGGGCAAGTCGTTGGAAA 15071 37 100.0 40 ..................................... TAGGGCAGAGCGAGCAGCTGCTGCCGCAGAGGCAAAGGGA 15148 37 100.0 39 ..................................... TCCCGCTGCCTTGGGCAAGCGATTAAGCGCTGCGCCCAA 15224 37 100.0 34 ..................................... CGTGGTCGAAGGCTGGGACGACCTCGCCATAGGA 15295 37 100.0 36 ..................................... ATGGCTCGGAGTGCGATCGCGGCGATCGCATATCAT 15368 37 100.0 33 ..................................... CTGTGCAGTTTTCTCCCTAAAGAGGAATCTGCA 15438 37 100.0 33 ..................................... CGGCTTGCTTCAGGAAGTGCCGGGTTCGAGGGT 15508 37 100.0 32 ..................................... GGGGCGCGATCGCTGGCTGGCTGGCTGCGGTG 15577 37 100.0 33 ..................................... TGGTGCCCATGGCTCCCAAAGCGAATAGCTGAA 15647 37 100.0 36 ..................................... GCGATTCCACCCTTGAGGGTGCTTACCGCGGCGCTA 15720 37 100.0 37 ..................................... CCTAATCGATCTGTGCTACCCCGAAGCCGGATTCTCT 15794 37 100.0 39 ..................................... GAGGAGATGCTGGCAACTGCCTCGTATTTCGAGTTCCAA 15870 37 100.0 71 ..................................... NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGAGGTAGGCGATCGTCAGGGAGGTGAGCAAGG 15978 37 100.0 35 ..................................... CGCCCCAGAGTGGGGAGGGCAGGCATGGACGAAGC 16050 37 100.0 49 ..................................... GAGGANNNNNNNNNNGGAATCTCCCATGCCAGCTCCCCGAGATCCTGTT 16136 37 100.0 35 ..................................... GGGGTCTCTGGCAGGAAGAATGCCAGAGGCGTGGA 16208 37 100.0 35 ..................................... CTTGGAGCGGAGCGAATGCTGGCTCTATAAAAAGC 16280 37 100.0 35 ..................................... TGCGCTCCACAACCAGCTATCTGCCGCCTACGTAG 16352 37 100.0 40 ..................................... TCGGCATAGAGATGACGAAGAGTTTTTCTGGCTCACGCTA 16429 37 100.0 36 ..................................... TGGGATGATCTCCTCCAATAGAGATGCTGCCAAACG 16502 37 100.0 34 ..................................... GGATCGAAGAGTGCCGTGAATTTGATCGAAGAAG 16573 37 100.0 33 ..................................... TTAGATGCACTGAACGGACTCTATAAGGACTAC 16643 37 100.0 35 ..................................... GAAGAAAGCCTCCACTGCCTCGGATAGCTTCAAGC 16715 37 100.0 41 ..................................... TNNNNNNNNNNGGGAGCGATCGCGACCCACGTACCTACTAT 16793 37 100.0 34 ..................................... TGGGCGCGATCGCCATCTCCAACTCCATGGAAGC 16864 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================================================= ================== 27 37 100.0 38 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : CCCTATCAGGGATTGAAACGTAAGCAAGACCCACACATTTTTTCTCGCCTCTTAGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTATCTCCATACTTTACTCTCCTAGAGCTTCGATTTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTTGGGGTCGGTGGCGGCGAAAGCCAGCTGCCCGGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCGACTCTCCGCCTTTTTTTTTGTGCGATCGCGCGTTGAAATCAACTAAAATCCCTATCAGGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCTTGATCGATATGCTCGTTCCTATACGAAGA # Right flank : CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCATCCCAGCTAGCGATCGCTCTCCAGGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGAATTCCTTGACGAATGCCCGAACCAGACCGACCAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTCTCCAATGCGTGGGGGCGATCGCGCTTTGGACGCGATCGCTCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGGCAGCTCTCGCGCATCAAGCGTGGGGGACAGGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGGGTAGGCAATAATGAAGATGCGCTCTCTGAGATGTTG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [31.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 3 17100-19406 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000193.1 Fischerella thermalis WC341 NODE_880_length_45361_cov_27.666233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 17100 37 100.0 35 ..................................... GAATTCCTTGACGAATGCCCGAACCAGACCGACCA 17172 37 100.0 43 ..................................... TCTCCAATGCGTGGGGGCGATCGCGCTTTGGACGCGATCGCTC 17252 37 100.0 35 ..................................... GGGCAGCTCTCGCGCATCAAGCGTGGGGGACAGGG 17324 37 100.0 35 ..................................... GGGGTAGGCAATAATGAAGATGCGCTCTCTGAGAT 17396 37 100.0 36 ..................................... CTCGATGCAGAGAATGCATTCTCCACACTCCCGGAG 17469 37 100.0 35 ..................................... GAGTTTTTTGCTCATCATGCAAGCGCTGATAAGCC 17541 37 100.0 35 ..................................... GGCGCAGGCTTCGGTGGAATGCCCGTCCACGGTTT 17613 37 100.0 36 ..................................... CTTGGTACTCAAAATATGAAGCGGTTCTTAACAGTT 17686 37 100.0 33 ..................................... GCGATGCCTCCCGGGAAAAGCTCGAAGCCTCTT 17756 37 100.0 44 ..................................... GTNNNNNNNNNNCTTAGGGACACTGACTGGACTACCCTGGCAAA 17837 37 100.0 34 ..................................... GGGGCATGAATGGGCTAGGAGTGAGAATCGGCAT 17908 37 100.0 41 ..................................... TGCGGCATCGAAAAGAATGCAGCGATCGCTCGAATCCAGTA 17986 37 100.0 34 ..................................... GTCGAGCCTCGGCTATTCACTTTGCTCAAATCAA 18057 37 100.0 35 ..................................... AGCCAGATACTGAGTGAAGGCGAGTTGTTCGTGAT 18129 37 100.0 41 ..................................... CACTCACGATCAATGGTGCGATCGCCCAGACCTCGAAGGGA 18207 37 97.3 41 ....................................N NNNNNNNNNTCTACATACTCGTGATTGCAAGCTGCCTTTTC 18285 37 100.0 41 ..................................... TTCGTGAAGCGGATCCACTCGCCCTTCCGAGTGCTATTCGG 18363 37 100.0 41 ..................................... CCCTCGGTCTCCAACCTCGATTCGAGTTTCTCCACCTCCCT 18441 37 100.0 35 ..................................... ACAGCACTTTCTGAGATGCTTGCGGACGACATCGC 18513 37 100.0 32 ..................................... CAGGGAAGCCGCCCACCATCCCATTCGGTGGA 18582 37 100.0 35 ..................................... GTCGGCATCCATGGAGATTGCATTAGCGTCCGGTG 18654 37 100.0 35 ..................................... GGAATAGGGGTGAGTTGATGGAAGCCGTGATCGAT 18726 37 100.0 43 ..................................... GAATNNNNNNNNNNTAGGTGAATCTCCCTCCCCGGTATGTATG 18806 37 100.0 32 ..................................... ATCAGTCCGACAGGCTAGGGAAGGTCGGTCGG 18875 37 100.0 33 ..................................... GACCCAAAAGACCTGAAAATTATATTGCCTAGA 18945 37 100.0 33 ..................................... TTAATCAGCTTTTGCTCTCTGGGGATAGAGTTT 19015 37 100.0 31 ..................................... TGCCGGCATCAAAGTCATTACGCTCCGCCAA 19083 37 100.0 33 ..................................... TTGGCATCCATCCGTGGTGTGGACGCAAGCCAA 19153 37 100.0 38 ..................................... GGCTGAGTATGTGACCATCGACGGGCTTGACAGTACAC 19228 37 100.0 34 ..................................... CAGAGGTCTGATACATAGTGGCACCCCACTCCTA 19299 37 100.0 34 ..................................... ATTGTATCAGAGAGTAAGAGAGTAAGAGATATGA 19370 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 32 37 99.9 36 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : GGATTGAAACTTAGATGCACTGAACGGACTCTATAAGGACTACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGAAGAAAGCCTCCACTGCCTCGGATAGCTTCAAGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTNNNNNNNNNNGGGAGCGATCGCGACCCACGTACCTACTATGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTGGGCGCGATCGCCATCTCCAACTCCATGGAAGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCATCCCAGCTAGCGATCGCTCTCCAGGA # Right flank : CCTAAGCAGCGCGATCGCAACCTCTTTCCGAGATCGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAGGAGCGTAAACGTGATTATCAAACCATCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTCTGCTGAAGTGCAATGAGACTTGAAGATGCTATGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGCAACCACCATGGAATCTCTCCACAAGTTTGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGAGGCGCTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 4 19718-19966 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000193.1 Fischerella thermalis WC341 NODE_880_length_45361_cov_27.666233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 19718 37 100.0 35 ..................................... CTCTGCTGAAGTGCAATGAGACTTGAAGATGCTAT 19790 37 100.0 32 ..................................... GCAACCACCATGGAATCTCTCCACAAGTTTGA 19859 37 100.0 34 ..................................... GAGGCGCTTTTCCAGGGCTTCGATTCTCTCTACT 19930 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 100.0 34 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : GACAGTACACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCAGAGGTCTGATACATAGTGGCACCCCACTCCTAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATTGTATCAGAGAGTAAGAGAGTAAGAGATATGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTAAGCAGCGCGATCGCAACCTCTTTCCGAGATCGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAGGAGCGTAAACGTGATTATCAAACCATC # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGCAGACGTATCGGCGATCGCCTCTTTCTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGAATGCAGCAATCCCATCTTAACTCGAATCGCGAGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTCGATGCATCTGAGGATGTTGTCGTCGGTCACAATCCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTACAGCTGTATACAGCGATCGCTTTTGTCCAGACTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGATGACAAAGATTCTTAGGGTTTCCTGCTGGAAGTTGAAATCAACTAAAAT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 5 20158-21055 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000193.1 Fischerella thermalis WC341 NODE_880_length_45361_cov_27.666233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 20158 37 100.0 36 ..................................... GAATGCAGCAATCCCATCTTAACTCGAATCGCGAGA 20231 37 100.0 38 ..................................... CTCGATGCATCTGAGGATGTTGTCGTCGGTCACAATCC 20306 37 100.0 35 ..................................... TACAGCTGTATACAGCGATCGCTTTTGTCCAGACT 20378 37 100.0 33 ..................................... GATGACAAAGATTCTTAGGGTTTCCTGCTGGAA 20448 37 100.0 36 ..................................... CAGAGAGGTAGCTCGCCGCATCCATACTCTCTGCCC 20521 37 100.0 37 ..................................... GCGCGATCGCATCGCCGAACTCGAAGCAGATCTGTTG 20595 37 100.0 33 ..................................... GGAGGAATCTGCACAGATTTTCCATATATATAT 20665 37 100.0 35 ..................................... CGCCTAGCCTTCTTACCTCCCGTAGTACCCTCAGA 20737 37 100.0 33 ..................................... GGCGATCGCCTCATTCGCACCGATCGGAAGACC 20807 37 100.0 33 ..................................... GGCATCTGCTTTCGGATCTATAAAGAAAATCTT 20877 37 100.0 32 ..................................... TTTATTAGCTATTGGCTAACCGTGGGCAGCGA 20946 37 100.0 36 ..................................... ATTCTTGCCCTGAACGAGATGCTGCTGAGTTTAGGA 21019 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 100.0 35 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAGGAGCGTAAACGTGATTATCAAACCATCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTCTGCTGAAGTGCAATGAGACTTGAAGATGCTATGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGCAACCACCATGGAATCTCTCCACAAGTTTGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGAGGCGCTTTTCCAGGGCTTCGATTCTCTCTACTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGCAGACGTATCGGCGATCGCCTCTTTCT # Right flank : CGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGCAAGTCACGTGTCTCCGACGGAGCGATCGCGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTTTTCAGGAAGGCAAATAGCTTGCCGATAAACTTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACACTCGTGTCCGGATGGCATTCGCAGTTTCGGGCTGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAACGTGACCACCCAACAGACCGGCATCGCCCAGAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [23.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 6 21740-22064 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000193.1 Fischerella thermalis WC341 NODE_880_length_45361_cov_27.666233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 21740 37 100.0 34 ..................................... TGGAGCGGTGTTCTGAGCGGCGACGGGGATACAC 21811 37 100.0 35 ..................................... TTCTACCACTCCCTCTACGGATGGGCATCCGGGAA 21883 37 100.0 34 ..................................... ATCCACCGGATGCGCACCGAACCGGGAAGAATAA 21954 37 100.0 37 ..................................... CAGGATACCTCTGCTTCAGACGGCGCAGGGCGTGAGA 22028 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 100.0 35 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : AGCGATCGCGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTTTTCAGGAAGGCAAATAGCTTGCCGATAAACTTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACACTCGTGTCCGGATGGCATTCGCAGTTTCGGGCTGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAACGTGACCACCCAACAGACCGGCATCGCCCAGAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGCGTGCCGGAGGCGATCGCACCCCATTT # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTACTGCAAAGATCAGCCATACAAGCAAACGCCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTCGAAGGCTTTAACAAACCCCTTGATAAATATAGGTTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTTCGCATTCTGTAGCCTAATGTCACTTTCTTCTTCTTCGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGCAGGGGAAAACAGCGATTTTCCTGCGCGAAGCGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAGCCCTAAGGTAGTCTTACCCCACCGCCTCCCGTTTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGAGTACGCCAAC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [18.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 7 22219-23059 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000193.1 Fischerella thermalis WC341 NODE_880_length_45361_cov_27.666233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 22219 37 100.0 37 ..................................... TCGAAGGCTTTAACAAACCCCTTGATAAATATAGGTT 22293 37 100.0 40 ..................................... TTCGCATTCTGTAGCCTAATGTCACTTTCTTCTTCTTCGA 22370 37 100.0 35 ..................................... GCAGGGGAAAACAGCGATTTTCCTGCGCGAAGCGA 22442 37 100.0 36 ..................................... AGCCCTAAGGTAGTCTTACCCCACCGCCTCCCGTTT 22515 37 100.0 41 ..................................... GAGTACGCCAACCGTAAAGGCGCATTGATGGGGCAAGGTGG 22593 37 100.0 35 ..................................... CGGTGGACAATCGCCGCTAAGGCAGAATCCCACCA 22665 37 100.0 34 ..................................... GGATTGGTTCTCCCTAAAATCGAAAGATTTTCCC 22736 37 100.0 33 ..................................... AGCACGTCGCCATTGTTCCCGGCACATAACTTG 22806 37 100.0 34 ..................................... CCAGCTGCACTGCGTATGAGTCTCTGTCCTGCTT 22877 37 100.0 38 ..................................... GTAATACCCTGTATAATATCATACAAACATTGGCTACA 22952 37 100.0 34 ..................................... CGCCTCGCTCGAAGAGTTCGTAGCCAGAGCGGAA 23023 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 12 37 100.0 36 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : GGAGGCGATCGCACCCCATTTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTGGAGCGGTGTTCTGAGCGGCGACGGGGATACACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTTCTACCACTCCCTCTACGGATGGGCATCCGGGAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATCCACCGGATGCGCACCGAACCGGGAAGAATAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCAGGATACCTCTGCTTCAGACGGCGCAGGGCGTGAGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTACTGCAAAGATCAGCCATACAAGCAAACGCC # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAGGTCATACTTATCCCTTTCTCCTTTAAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTGCGTGCCCGCGAAGGTGAATAAGGTCTCGGCGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGAGACTTGGCGGAGAGGGATGACTTTTAGCCCAGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGCCGTCGTGTGATTCCTCGTCGCGACTTTCTGGACGTTGAAATCAACTAAAATCCCTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 8 25069-25540 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZW01000193.1 Fischerella thermalis WC341 NODE_880_length_45361_cov_27.666233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 25069 37 100.0 38 ..................................... GAGGAGTCTCCGAAAACCTGGACTGTGCAGACTGACGA 25144 37 100.0 33 ..................................... TTTCTTTCTCCGATCGAAGACCCAAGCTGACTC 25214 37 100.0 36 ..................................... TATAGGTGTACGATGGAGGAGTAAAGTATCGGAGAA 25287 37 100.0 34 ..................................... TCAGTTGCATTCCCCCCAGCAAGATCTGCGCAGG 25358 37 100.0 32 ..................................... AGAAGCACCGGGTAGACGTCGTAGCCCTGAGG 25427 37 100.0 40 ..................................... GCTTGGCGCAAGTGCTTTGACAGGTGCTTTAATCGGTGGA 25504 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 99.6 36 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : AATCAACTAAAATCCCTATCAGGGATTGAAACGGGCAGCTTTCGCGGATCAAGCGCGGGGAACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTCTTACACGTCTCATTCTGGCTCTATTCTGTCCCATGATCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACATCAAGCTTCAACCCATCCACTACCCACTCATCCCCGGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCTAGTGGACATCCGTACCAGCTGGGGCGTGACCTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTCCGAATGGCTGGCATCCTACTGCATG # Right flank : GTGGTGAGATTTACGTATAGCACTTTAAAATTAGGAGACTAAAAAAACCAAACTTATACGCAAAACCTTACTTAAATCTATAATTTAAAAATAAAATCAGCGATCGCCACCTCATCTTTACCTGTTATAGCTTCTTGGGGAGGACTCAGTAAAACAGATCGCTGCATTAATTTCTGACTTTCAAGACGACGTTCAACCCGGCTAGGAATTCCGTAACCGTAAACAATATGTCCTTGTCCAGCCAATACTGCGACTTGATAATCTGGATTAGCTTTGACAAACTTTGCAATTCCTTCTGCCATTGTTTCATCCCATAACACTTGCGCCAAAAAAAAGCGTTCAGCACCAGAACTATTACCGTGTCCAGCATTTTGATGCTGTTGAAAAGCTTGTAGTGATAACTGTTGATACTTTTGGTTATCAGTACGAATTTCTGAAAAAGGCGGAATAAATTTCCTTTCGGATGCAGTGAGACTTTCTAGACCTTGACGTGCAACTTT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //