Array 1 6027-6787 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLAN01000025.1 Helicobacter sp. 11S02629-2 NODE_25_length_6921_cov_104.64_ID_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 6027 35 100.0 31 ................................... CCAGATCGGTAGGTCCAGTAAGTGTATTGGG 6093 35 100.0 31 ................................... CAAAAGGTTTGAATACTTTGTTGTGGATCTG 6159 35 100.0 31 ................................... CAGATGGAGTTATACCAGTAGGCTTTGCAGG 6225 35 100.0 31 ................................... AAATTTTTCGAGATTATAAACAGCACTCCCG 6291 35 100.0 31 ................................... TAATCTTTAGGGGGCGTTTTGGAGCCGTGCG 6357 35 100.0 31 ................................... TTGAAAAAGTGAAAGAAGCAATTTCAATTTG 6423 35 100.0 31 ................................... ATTTAATGTCAATTCCCGAGTATATAAGTAG 6489 35 100.0 31 ................................... CATCTTCTAGACTTAAAGCATTTAGGTCTTA 6555 35 100.0 31 ................................... AAAATAATGAATGAGGATGTGATTGAGGGGA 6621 35 100.0 31 ................................... ACATAGTGCTTGATAAAGATATAAATTCACA 6687 35 100.0 31 ................................... AACTCAACTTGGCGGGGATTATATAATCAAA 6753 35 85.7 0 ..A.....C....G.A.........T......... | ========== ====== ====== ====== =================================== =============================== ================== 12 35 98.8 31 TTGTAGCATATAGAACTTTAGGGGACTCTTATAAC # Left flank : GCTTGCAAAGGGCTTGATAGCAAGGGAAGCCAAGAGTTTATATTAAGCCCAAGTGATAAAAAACATCTACTTAGAATCTTTGATCATAAAGTTTACATGGATGGGAAATACTATCTTATAGATGCTGCTATAGAACAAAGTATAGGGTCTTACTTACAAGTTATCTTAGAGAAAAGGGAGCATCTAAGCTTGCCAGTTTTGGATGAAAGGTATGTAAAAAGTGTAGTTAGCAATAATGGGTAAATACAAAAATGCACTTATATAAAATCGCTTTATATATTTCTTAAAGACAAGACCCTAAGGCCTTGGCTTTAAGAAAACCATGGTCTTAAACCATGTGTGTACAACTTAAGATTTTAAAATCTTAAGTCTTATTATAAGAGTCCCCTAAAGTTCTACATTTAGAGGTTTTAACTATAGCATTTTAAAGTTTAAAGCTACTTTAAGCTTTAAAAATATGCTTTTAAAGCCCTAAATTACGGGCTTAAGTCCGACATGTG # Right flank : AGCATTAGCTTTTTCTTACGTAGAAAAACTAGGTAAAGGAAGCAGGGAAAAGCTAGAAGGAAGCGTACTAAAAAAGCTTATAGCCTTAAACACACATGGTAATAAAGAATTTAGCTACACTGACTTTGTAAGAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTAGCATATAGAACTTTAGGGGACTCTTATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 147161-147658 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLAN01000004.1 Helicobacter sp. 11S02629-2 NODE_4_length_153386_cov_106.597_ID_7, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 147161 36 100.0 30 .................................... AAAAGCAATGATTGACTGGGACTGCTATGA 147227 36 100.0 30 .................................... AATTGAAATGCTCCATTTTAAAAGTTTCAG 147293 36 97.2 30 ..........................A......... TTTCGATGAGCTGTTTAGACTTAGCAACAT 147359 36 97.2 30 ..........................A......... CTCCCAAAATGGTCAAATTCAGATTATGTA 147425 36 100.0 30 .................................... TATAAAAAATTTTAATTTTTATACAAAAAG 147491 36 100.0 30 .................................... GCAGTTGTTAGTTTTGTGACTTGCACTTTG 147557 36 100.0 30 .................................... CGTTCTAGCTCCCCACCACTAAGACTAGGA 147623 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.3 30 GTTATAAGAGTCCCCTAAAGTTCTATGTGCTACAAT # Left flank : GCCAGTTATAAGAATCTCCTAAAGTCTTACATGTTATAATGAGAAGGAAAACCGAAAAGAACACTTAGATAAGATGAGCGAAAAAATGCTTCACAATAACTTAGAGCAAATAAAAAAGACAATTAATAAATTACAAAATAAAATAAAGAGCACTAACAAAAAAATAAAAAATTACACAAAGGCTGAGCAAGCTATCAGACAAGCTTTGTTATTTAGACTTCAGACCCCAACAGATGAAACTGTAGAATATATAAAAAATTCACAGACTACAGATTATCACGATCATGATGAATTATTAGAAGATTTGCAAAATGAAAACAGGCAAGAAAGCTAATTTATGTGAGAGCTGAATATCCAAAATACTTACGTAAAAGATTTAAAATTAGTGATCAAACAAAGATGGGACGTAGAATCCATCAAACAAGTGGTTGATTCTTTGATGCAAGATGATGTATTAGACAAAAGGCTAAAAAACCATCAGCTAATTGGAGAGCAAGGGA # Right flank : TACATGTCGGACTTAAGCCCGTAATTTAGGGCTTTGAAAGCATATTTTTAAAGCTTAAAGTAGTTTTAAACTTTAAAATGCTACAGTTAAAGCCTCCAAATGTAGAACTTTAGGGGACTCTTATAATAAGACTTAAGATTTTAAAGTCTTAAGTCGCACACACGTGGTTTAAGACCACGGTTTTCTTAAAGCCAAGGCCTTAGGGTTTTGTCTTTAAGATACTTTAATATTTTTATCTTTCTATCATTACAGCTATCATCATCACAGACATTACAAGCGTGAGATTATACCCCAAGACAAACCTAACTAGATCTAATAAAGTATTAATTAACTATCAAATAGATGCATGCAGATATAAACTACAAATCCAAAGATGGTATCAAAAATGACGTAAATATGGCTTTTATAAAAAGTAGATTCTATGTAAGCAAGAACCTAGGAGTAGCTATAAGCCGAGTTCTGTATTAGGCAATCATTTATCTTCTTCTTTATCTCGCGAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAAGAGTCCCCTAAAGTTCTATGTGCTACAAT # Alternate repeat : GTTATAAGAGTCCCCTAAAGTTCTATATGCTACAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //