Array 1 88864-90359 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXKJ01000007.1 Escherichia coli strain ST-648:K075 NODE_7_length_214795_cov_199.951, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88864 29 100.0 32 ............................. CTCAGCGGCAAAAAATACGATCTCGCCGGTGT 88925 29 100.0 32 ............................. GCAAACCGGCATCAGATATAAGCTGTTCTCTT 88986 29 100.0 32 ............................. GACTGACACAATCTCAACTTGCTGAATTAACA 89047 29 100.0 32 ............................. AATGGCGCTGCCGATCGACAAATGGGACCTGG 89108 29 96.6 32 ............................T ATCGGGTTCCCTTTTAATGTGATTCCGAATTC 89169 29 100.0 32 ............................. GCAGACGTTACGGAACGGCGCGCGAGTATAGC 89230 29 100.0 32 ............................. AACAGGCCTGGGTCGACGAATTGCAAGAGGTC 89291 29 100.0 32 ............................. CAACTTGGCGACACAGACGTAACGGCGGTGTC 89352 29 100.0 32 ............................. GCTTTAACTCCATTTATCAAAGCGCAATTAGA 89413 29 100.0 32 ............................. ATAGCTGATAGCTCTCTCAATAATTAACGGAT 89474 29 100.0 32 ............................. CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT 89535 29 100.0 32 ............................. TCCTTAATTACAACGACACCACTGGAAAAATT 89596 29 100.0 32 ............................. TTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA 89657 29 100.0 33 ............................. GGCTGGCATCAGATTTCTAAGGAATACGACAAC 89719 29 100.0 32 ............................. ATTTAGCCCTATCTCAACGTTCAGGTGTTTTG 89780 29 100.0 33 ............................. CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC 89842 29 100.0 32 ............................. TTGAAATGTGGCCACACCGTGTTAATGTATGG 89903 29 96.6 32 ............................A TTCCGGCTACTTTTGTTGCTCCCTGCTCATCC 89964 29 100.0 32 ............................. AATATTTACTTGGATGCGTCGGACATTGAATC 90025 29 100.0 32 ............................. GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA 90086 29 100.0 32 ............................. GCCGCGTACATCAACGCAGCAGCAAGCGCATA 90147 29 100.0 32 ............................. TTAGTTCAGGATGCATAATGAAATACCCGACC 90208 29 100.0 32 ............................. TCAACGAAAACGCAGAGCGAGGAACGGATATT 90269 29 100.0 33 ............................. CAGGCAACATTTACCGCCGGTCAAAAACAGGAC 90331 29 93.1 0 .......................G....A | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115904-116481 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXKJ01000007.1 Escherichia coli strain ST-648:K075 NODE_7_length_214795_cov_199.951, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 115904 29 100.0 32 ............................. ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA 115965 29 100.0 32 ............................. CAATAACACCGGCATTTGTCCACGACAATATT 116026 29 96.6 32 ............................A GCGTAAGAAAACAATTTTTTCAGAAAACTAAC 116087 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 116148 29 100.0 32 ............................. TTTATAGCGCCAAAATTGACGAAAGACATGTT 116209 29 100.0 32 ............................. GGAAATTAGGCAAATGTGAACACGGCGGCCCC 116270 29 100.0 32 ............................. ACGACGAGACGCCCTGGTGTGCCGCGTTCGTC 116331 29 100.0 33 ............................. CCATAACCACCCCCATCATGAATATTTTCCGGC 116393 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 116454 28 72.4 0 ..A........C..T..-..T.G..CT.. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 96.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGTTTCTTCACCAGCGGTAGTATTATCCGCATAACATCACGGCAACGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //