Array 1 29742-29108 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNUC01000023.1 Klebsiella oxytoca strain 706127-17 706127-17_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 29741 28 100.0 37 ............................ TCTCCGTCGAACGTGTAGTGTAAGCCCCCATCACATC 29676 28 100.0 32 ............................ CTGACCCGTCTACCGGCTAACCTGCTGCAGTC 29616 28 100.0 32 ............................ TCTACCGACGTTAAGCTGCCGCCGTTACCGGG 29556 28 100.0 32 ............................ GGGAAAGTCGGTGAGCCGCTGCCGCCGCTGTC 29496 28 100.0 32 ............................ AATTAAAGCCTCAACATTCATGCGAGCTTTTT 29436 28 100.0 32 ............................ GGATATTGCTGAGTGGGTGTAGCCTGGATGTC 29376 28 100.0 32 ............................ ACCAGCATCAATAATTAAATTACGAATCATAG 29316 28 100.0 33 ............................ GACAGCCTAGGAAATTACCGCGGGCGTTGGCGA 29255 28 96.4 32 ........T................... TCCGATACCACGGCATACCGGCCGCAGCTTTC 29195 28 89.3 32 A...T...................T... TGCTCTTCCTGGCGCTGTTGCTTCTGCTGTTT 29135 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ===================================== ================== 11 28 98.1 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGCAGCCCCGAGCGGCTGATGCGCCGCTCGGTGAGAAAAGGCTGGCTGACGCAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCGACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCAAATGGGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCTCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTTGTCGAGTGCTAAAACAAACCATAACCGGCGCGGTCTTTCGCGCCGGTTTTTTAATCGCTAATTAAAACCCTTTTTTATGATGAATCTCTATCTTATTGATTTTAGATAGTGATTTTATAAAAGTCGGAAACAGGGTTGTGAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTGTAGTGGTTAGGCTTCA # Right flank : TCGTGGCGGTTACGGGCGCAGAGTCAGGGCCGTCAAAGCCGAAGAGGGAAACGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAGTTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 39341-38171 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNUC01000023.1 Klebsiella oxytoca strain 706127-17 706127-17_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 39340 28 100.0 33 ............................ GTTCACAAAAACCATTTGACGTAACCACGATGG 39279 28 100.0 32 ............................ GTTTACGCCAACAAAATTGAAGGCGATGTGAT 39219 28 100.0 32 ............................ TACGACGACCTTTTAAAAGCTCGCGTTATTAT 39159 28 100.0 32 ............................ AGGAGCGGGTCATATTCCACCGTCGCGGCTTT 39099 28 100.0 32 ............................ TCAGTGATAGATATCTGTAACCGGGCGCTGAG 39039 28 100.0 32 ............................ TGCAGCAGCGGGTAACGTTCCTGACGACGACC 38979 28 100.0 32 ............................ CAATACTCACCATTGATGAGCAACGATAAAAA 38919 28 96.4 32 .........................G.. ACAAATCTAGTCACTATATATCAATTACTTAA 38859 28 100.0 32 ............................ CGGCTCCAGTTCCCTGATGTGAAAGTTAAACC 38799 28 100.0 32 ............................ TGAAAAACGAGGTCCAATATTGGCCCATGTGC 38739 28 100.0 32 ............................ CCTGGCCCCGGCAGTATCTATGATGGTCAGGG 38679 28 100.0 32 ............................ GGAAGAAATCACCGCCATGCTTACCGCAGGAG 38619 28 100.0 32 ............................ TGCCGTGGCGGGGTTGGCTCCAGCCACAATCC 38559 28 100.0 33 ............................ TGCGGCTGCACGACCAGCGTCAGGGAAATCACT 38498 28 100.0 32 ............................ CTCTTCGCGTCTGCGATACCGGAAACGGAGAC 38438 28 100.0 32 ............................ ATGCACCGGTAGAAGAACGCTGATCAATTGCC 38378 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 38318 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 38258 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 38198 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCATCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCCAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGTCAGGTGATCGTTGAGCTGGATAAAGAGAAAAATGCGCTGACCTACGCCTTCCAGAGCGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGGATCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTTATTAAAGAGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACTGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAACGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTTCAGGTCAATGGCGGCCGCGTGGAATATGTTACGAGCGAGGGAAAAGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCCGTTAGCCAGGCTGCAATGCGTGAGTTTGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCTGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //