Array 1 92-524 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLAQ01000033.1 Helicobacter sp. 12S02232-10 NODE_34_length_1272_cov_199.978_ID_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 92 37 100.0 29 ..................................... TAGTGTCTTTACTTTTTGAAACAACCAAA 158 37 97.3 29 ....................................G ATTTTCTGCAAATCGCCTACAGGTTACAA 224 37 100.0 29 ..................................... CTGCGATGTTCGGTGGTGTCCGATGTGTG 290 37 97.3 29 ....................................A AGATTATCAAGAGGCAAAAGAATTATTGA 356 37 100.0 29 ..................................... CAAAAAATGTTTAAATGGGCTTGCAGTCC 422 37 100.0 29 ..................................... ACAATAACCTCAACAAAGACCTATGGGCT 488 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 7 37 99.2 29 ATTTTACCATAGAAGAATTTAATAACTGCCTAAAACT # Left flank : CAGTTATTAAAATCTTCTGTGTGTATTATAGCATATTTTTTATCATTTTATTCTATGTATATCCCTAATATCAATGATTTGATAGAGGTGTA # Right flank : TGCTTATGATGTCACAAGACTCAATAACGACTTCGAAAAATATCAAACTGAACTTAGAGAAAAGCTCTCAAAAGCAGGTACAGACAAAGAAAAACAAGCACAGGTTTATGCTGAAATGAAAATGAAAGGAAATGATTTATTATTGTCTTATGTCAAAGATATCGCCAATAACATCTCATTCTTAAATGAGACAATGGCTTTAACTTCAAATTTAATCGCGAAAGACTATAAAAATAAATATGACAACAATCCTGAATTCTCTGTATTAACTCAAAAACAACAAAATGAGTTTAATAGATTAAAAGATGAAATCTTCTCTGGAAGCTCTAAAAGTCTTGCAGACTATGCTAAAGACGCTAATTTTAATCAGTATGGTTTTCCAATCTATGCACCAAAAAAATCAAACAATAGCAATAATAATAATGGGAGCATAGAATAAAAATATTAAAATCTATTGCAAATCAATTACTATGTTACATATTATTACATAATTAATATTG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATAGAAGAATTTAATAACTGCCTAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 724-92 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLAQ01000010.1 Helicobacter sp. 12S02232-10 NODE_10_length_85949_cov_203.52_ID_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 723 36 100.0 31 .................................... AGTACGGCGATATCAAGTTGTGATGGGGGTG 656 36 97.2 31 .............................G...... TAGTTTTTTGCTTATTTGATATCGAGGCGTT 589 36 100.0 30 .................................... TCATTTTTTTTATTGTGTTCTTGTTTCGAA 523 36 100.0 30 .................................... CAAATTCTCTTTTAAAAATAGAAAAATATG 457 36 100.0 30 .................................... CAAATTTTTAACGAGGTTAAAGAAGAATTT 391 36 100.0 30 .................................... AGATGTACGAACTTCGTTAAATATGTGGAA 325 36 100.0 30 .................................... ACAATTATCCTAACGGTGCTCATTCGTTCA 259 36 97.2 30 .............................G...... GGACTGCAAGCCCATTTAAACATTTTTTGA 193 36 97.2 30 .............................G...... TCAATAATTCTTTTGCCTCTTGATAATCTT 127 36 97.2 0 .............................G...... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 98.9 30 GTTTTAGGCAGTTATTAAATTCTTCTATGCTAAAAT # Left flank : TAAGTGGCAGATGTGCTTTGAGCCAATAGATTCTAAGCAAACCATCTTGCCTGAGAGATTTAAGATTTGTTCTGATTCAGCCTTTCTTTAACAAACGCGTCTTTTATCGACTCTTGGGTAATTTAAGGCGAAGTCTCTTGAGAATCTATCTAAATAGTAATGTAGTTTTGGAATGACTATAAACGACAAAATATTTTATTTTGTCGAGATTTGTTTAAGGTGGCATTACTATGAATTCTAGTGGAAAATTGGTAAGTTTGGAACGTATAGTTTTAATTTGAACTACGTGGCAATCAATGATTTTTAACAATCCTAATGGTATACTTCAAATAACTGCCTTAGATTCAAGCACAGACAAATCAATCTTTTTTAACCTCAAATTATAGTTATTACCGCTTAAAAACAGAACGCAAGTTCAAGGAGCGTGCATAATAAGACCTTAAAGAATGTGAAAATACGATGCTAAAATGTTTATGCGTGGTTGTATATTTTATTTTTAC # Right flank : TACACCTCTATCAAATCATTGATATTAGGGATATACATAGAATAAAATGATAAAAAATATGCTATAATACACACAGAAGATTTTAATAACTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGGCAGTTATTAAATTCTTCTATGCTAAAAT # Alternate repeat : GTTTTAGGCAGTTATTAAATTCTTCTATGGTAAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 92-787 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLAQ01000004.1 Helicobacter sp. 12S02232-10 NODE_4_length_179307_cov_183.367_ID_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 92 36 100.0 30 .................................... GATTTTCTGCAAATCGCCTACAGGTTACAA 158 36 100.0 30 .................................... AAGATTATCAAGAGGCAAAAGAATTATTGA 224 36 100.0 30 .................................... GTGAGATTCAAACAGAAACCGCCGAAATTC 290 36 100.0 30 .................................... TCTGCGATGTTCGGTGGTGTCCGATGTGTG 356 36 100.0 30 .................................... GTTAGTGCGGTCATTATGCTGGAGGTGCGG 422 36 100.0 30 .................................... AGGAATTCTTTGCTTAAAAAGCTAAAAATC 488 36 100.0 30 .................................... AAACCATCTTCTATTTTCCAACGATTTTCT 554 36 100.0 30 .................................... AGATTGACAAGCTTTATAACGAAGCAATGG 620 36 100.0 30 .................................... TCAAAAAATGTTTAAATGGGCTTGCAGTCC 686 36 100.0 30 .................................... AGCTTTTTGCTCTTTCTGATATGCCCTTAA 752 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 ATTTTACCATAGAAGAATTTAATAACTGCCTAAAAC # Left flank : CAGTTATTAAAATCTTCTGTGTGTATTATAGCATATTTTTTATCATTTTATTCTATGTATATCCCTAATATCAATGATTTGATAGAGGTGTA # Right flank : CTTTACGGGTGTATTTACCGATTTCTTCTGATAGCGTTTTTGCATATTCCATATCATCAGTTTTAAAAATTACTTTGTAGGCAACGGTTGCATTGATAATTTTTGCGTCTTCTTTGGAGTAATATTTTTCAATTAATGCATTGCTTTGTGTAATATAAAGTCCCACAATGCCATAACTTCTACAAAGTGCAGGCATTTCAAGTAAGAATTGGAGTTTTCCAAACCTTACAAACTCATCAAGAATAAAATAAATGCGTTCATTGGGGTCTTTGCTTTCTTTTGTTAAGAGATTTTTAGCAATGGATTCAAGTAAAATTCTAATTAAAGGTGCAAGGGTGTCAATATCAGTTTGTGCGATTTTGATATAAAGAGTAATATTTTCTTTTCGCAAATCTTCATATTCAAAACTCATTGATGAAGTTGCTTCTCTGACTTGATAACTGGTAAAAACCTGCATAAATCTGCTAAATACAGATTTGATGGAAGCAAACTCATTTTGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATAGAAGAATTTAATAACTGCCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 16132-16365 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLAQ01000004.1 Helicobacter sp. 12S02232-10 NODE_4_length_179307_cov_183.367_ID_7, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16132 36 97.2 30 .........................T.......... AACAAATTTGCAACCTATAGCGCTCTAGCA 16198 36 100.0 30 .................................... TTTTAACCAGTGCATTATAAACCCCGCTTG 16264 36 94.4 30 ......G.........T................... CAGGGGTGGGATACTAATTGCAAGAGGTCC 16330 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.9 30 ATTTTACCATAGAAGAATTTAATAACTGCCTAAAAC # Left flank : GAGTGTGAGAATGATTTTATCAATCATTGTTTTATTTTCTGTATAGGATTTTGCTTCATCAATAAAGATAAAGAAGCCCTTAGAGTTTTCTTTGGCTTCAAAAATCATTCTGTGGAATAAATATAAAGCGATTAAACTTGCGTCTTGATTGGAATTGGCAATAAAGTCCATATTAATGCAAGTGAGTTGTTTTTCAAAACTTAGGGAATCTTTGAGTTTATTAAAAATCGGATTTTTTAAATAGCGATTGAGTTGCATTTCAATATGTTGGTCAGGTGTTTTTAAAATTGTTTCTGCAATGTCTTTTAATCCAAAAGCTTGTCCTTGTGGGATCAGCATTTCATAGGTATCACTAATTGCTTTTTCAATTGCAGAAATTTTTTCAATATCATCAGCATTGTCTTCATTCAATCTGATTAAGAAACTTAGCCAGCTTGATAAAAAAGCAATGTTTTCTGCTTTATTTTCAAGCGTAAATGGATTGATATAAAACTCTTCTC # Right flank : CTTTTGCAAGTTGCAAATATCGCTATAAGCATTTTACCTATTTATAAATCTTTACCTCATTATTTTCAATAAAAGACTCTTTAAATAGCTTGACATATTCTCTGATTAATTTATCTTGGATTTAATAATTCTTTTTATGGCAGAATAAAGGTTTAAAATCAAGAATCAAGAGAATGGTTTAGCTAATTATTAAAATCTTCTGCGATAGAATGTTGTAATTGACGACTTAGTGGATAGAAATTTTAATATTTTTTGTAATACTCCCAATATACGGTATCTTAATTTAATAAGACTTTCTTCGCTATTAAGCTTACTTAACGAATAAAAATAATCCAGTCCTCTTCTTATTTCTTGTACTATCTTCCCATTAAGACGATTTAGCTAATTACAATCCGTAAGATAATCATGATTATATTTTTTAAGCTCAAAATAAGATATTAAACAACCATATTTAAAATTTTTTCATTAGTACACTGTTGTTTTTCATCTATAAAATATTT # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATAGAAGAATTTAATAACTGCCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //