Array 1 119574-118264 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXOE01000020.1 Escherichia coli strain 32_Esco_HA-NL 130781Q_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 119573 29 100.0 32 ............................. CATTGAAAACATTGCCTTTATTTTATTTTTTG 119512 29 100.0 32 ............................. GTGCCGCCGCTGGGCACTTCCTTCCCGTGAGT 119451 29 100.0 32 ............................. CCCTGATAGCGTCCAGTTGAATGCGCGCCCGC 119390 29 100.0 32 ............................. TCGGTAAACGACTGGGTGCATAAATACAAGGG 119329 29 100.0 32 ............................. CTCGGTTGTTTTCATATTACCGGCCTGCCACT 119268 29 100.0 32 ............................. ACAATATCCCGGACCGGGCGCTGATTTAGTCA 119207 29 100.0 32 ............................. CTTTTCATCAATCGGAGCATATTTGCGATCGA 119146 29 100.0 32 ............................. CGGACGGTGGGAATATAGAAAATCCGTCCACC 119085 29 100.0 32 ............................. TTATACTCTTTTCATCGACTAAGGAGGGGAGG 119024 29 100.0 32 ............................. CAATAACGCAGCATCCAGGAAGCTGTTTCCGC 118963 29 100.0 32 ............................. CGATCGGTGAAGAGGTCCGCGAAATACTCACT 118902 29 100.0 32 ............................. GCGATAGTTGATTCAGCCGCGCCAGCGAATGT 118841 29 100.0 32 ............................. GGGCCGCCGCGAATTTACACACGATTCAATAC 118780 29 100.0 32 ............................. AACTGGTGCGCGACGGCTGGCTAACAAAACGA 118719 29 100.0 32 ............................. CGTGGCTGCGCTGGCCGTTGCAGCAGTTTGAT 118658 29 100.0 32 ............................. CGTAAACGCCCCGTCGCCATTAATTTCGGGGT 118597 29 100.0 32 ............................. TGGGATGAGCAAATAACGTCGTTTCCTAGAAA 118536 29 100.0 32 ............................. CCGCCGTGCCAGTGATCCTCATACGGCCTGTT 118475 29 100.0 32 ............................. AAATTAAGAACGGCGTAAACGACGGCAGCATG 118414 29 100.0 32 ............................. GTGATGATTCAGAGCAGACATTAGCCCGCGCT 118353 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 118292 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTACTTGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCCTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 145548-145275 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXOE01000020.1 Escherichia coli strain 32_Esco_HA-NL 130781Q_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 145547 29 93.1 32 .........A..T................ AATGATTGATATAAATCTGTGTACGGTGTCCG 145486 29 100.0 32 ............................. CTAGGATAAATTAAAAGACAAAATTGCAGCAA 145425 29 96.6 32 ............G................ GAGCGACCAGTATCAAGATCGACAGGTTTTGC 145364 29 100.0 32 ............................. ATCGATATGTACGTTAGCGAGGGGATCACGCA 145303 29 93.1 0 ...........A................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAACCCTTAAACCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //