Array 1 440633-441261 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLMS01000034.1 Pseudomonas aeruginosa strain WH-SGI-V-07188 WH-SGI-V-07188_contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 440633 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 440693 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 440753 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 440813 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 440874 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 440934 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 440994 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 441054 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 441114 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 441174 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 441234 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 13532-14880 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLMS01000010.1 Pseudomonas aeruginosa strain WH-SGI-V-07188 WH-SGI-V-07188_contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13532 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 13592 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 13652 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 13712 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 13772 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 13832 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 13892 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 13952 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 14012 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 14072 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 14132 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 14192 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 14252 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 14312 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 14372 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 14432 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 14492 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 14552 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 14612 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 14672 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 14732 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 14792 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 14853 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCATCATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 25340-23755 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLMS01000010.1 Pseudomonas aeruginosa strain WH-SGI-V-07188 WH-SGI-V-07188_contig18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25339 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 25279 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 25219 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 25159 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 25099 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 25039 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 24979 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 24919 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 24859 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 24799 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 24739 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 24679 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 24618 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 24558 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 24498 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 24438 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 24378 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 24318 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 24258 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 24198 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 24142 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 24082 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 24022 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 23962 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 23902 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 23842 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 23782 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //