Array 1 436562-437566 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP088019.1 Pectobacterium carotovorum strain 25.1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 436562 29 100.0 32 ............................. TCACAGACGGTACGAGCGGAACGACAGTGGTA 436623 29 100.0 32 ............................. ACGCGACGCTTAGCCATAACGCGATCCTGAAT 436684 29 100.0 32 ............................. TGTCATCGATAACACGATCTTTGGGTAGATCA 436745 29 100.0 32 ............................. CGTTAAAAGTGAGAGTTTTCTCGGTAATAAAT 436806 29 100.0 32 ............................. GTGATGCCCAGATGTCTCACTTGCGCGGCATT 436867 29 100.0 32 ............................. CATGCTGATAATCAGAGCGGCCTGGGCTTCAA 436928 29 100.0 32 ............................. TAAAATCGTTTCAAAATCCAGCGTTTCGATAA 436989 29 100.0 32 ............................. GTAATCGCAACACATCGAACATTTACACGTTA 437050 29 100.0 32 ............................. TTGTTTTTGCGCGATGGCTATGTCGTCCATGC 437111 29 100.0 32 ............................. CCCGCCGATATGGAAATTCGCATCGTGCCGGA 437172 29 100.0 32 ............................. AAAAAATTCGCTTGATACGCGTTGAAATCGAA 437233 29 100.0 32 ............................. CAGGCTCGCGGCCAGCTCCGGCACGTTGGTGC 437294 29 93.1 32 ..........T..G............... TAATCAAAGAGACGCCGGGCAGTCGGAGAAAG 437355 29 93.1 32 A............G............... CGGGATGCATGGGGCGCTCAGATTGGTGCGCT 437416 29 86.2 32 .A..........TT.............A. GCCATGTTCGGACACGTCGAAACCGACACTTA 437477 29 100.0 32 ............................. AGATCATTGCAAACAAAGAGGAACCGTTCAAA 437538 29 93.1 0 ................T...........C | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGATGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGTGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGTCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTACGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTCTTTATTCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAATCGCTAAAGAATTAGCTGTTCTGGCTCACAGTTGTACAGCTTAGCTAGCTTTTTTCGGGTGCGTTTCTGCGGTCTTGAATCTGGGGATTCAAGCTGAGAGACGGCGGCTTGGGTAATGCCAAGTGCGGTTGCAACCTCTTGCTGTGAGAGGCCCCTAAAAATTCGCCAGGCTGCCTGTAAGCTGATGTCTTGATCAATGTGAATACTCACTACTTCATGAGGAATGGAGACATCATCCTCTTCGCTATGAGCGTAGGGAATGCTCTCATAAAGGGCGGGTTCGTCAGCGTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 438368-439191 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP088019.1 Pectobacterium carotovorum strain 25.1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 438368 28 72.4 34 ..-..TG.T.T...TT.A........... TGGCTGCGCAATTCTGTGATGTGTGGCAATGCGA 438430 29 93.1 32 A.C.......................... TCCATGCCTTTCCACTGGAAGCGCTCAAGGAT 438491 29 100.0 32 ............................. GTTTGAAAACTCGGCATCAATCAGCGAGTCCA 438552 29 100.0 32 ............................. GCTCAACGCATCGAGTCTCAATTGCTAGGGAA 438613 29 100.0 32 ............................. CTATTCCGGTGAGGCGGCTGATACATACAAAC 438674 29 96.6 32 .............T............... CGCAGCATATCTCAGAACAGCCTTTCTCACAT 438735 29 96.6 33 .............T............... AGAAATCTCAAAATCAGGTGGTTATTCTACCGA 438797 29 93.1 32 .............T..............A TGGAATGAAACACAAATACCAGTCAGCCAAAT 438858 29 93.1 32 ............TT............... CTCAAAGAAACGACAGCCGTTTTTCTCGTAAA 438919 29 100.0 32 ............................. AAATGAGCGTGGCCATATGCGCTGGTATAAAG 438980 29 93.1 32 ......A....C................. TTCGTTTTTGATACCAGTGAGCTTGAAGATAT 439041 29 100.0 32 ............................. CGCGATGTGATTCAACAGTTCGGCATCAGCGA 439102 29 93.1 32 .A........T.................. TTCAGAGATTGCCAATCAGATGCGCCGCCGAG 439163 29 89.7 0 .C..........T..............T. | ========== ====== ====== ====== ============================= ================================== ================== 14 29 94.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTATCTCGCACACTTGTGGTTCGCCGTTGATGAGCTCAAAGATAATGCGGTAATCTCCAACTCGTAGACGATACCGTTTGCCAGACGATTCGAGTTTTTTCAGATCCAGATTCACATCTGGAAATGTACTAAGCTCGCCCACTTTGTCTTTGATTCGTCTTCGATATCTGGTGTCAATTGTGCCGAGTTGTTTTAATGCCCGTTTTGACCAACTAACCTTAGTCATGAATCCCTCAAACGAAAGTCTTCCCTGATATAAGTTAATTATAAGACAATTTAACGATTTTTCTTATGTTTTGTTTATG # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCACGGGGTCAAATCCCGCTTTTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCAGTTTTGCACCCACTGTAACGGTGAGGCGCTATGCCAATGATTTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCGACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGTAGGTCAGACGACACGATATGATTTCACCCGCATTAGCCCTGCTGAGCTGTATGACACGGTTGAAGGCCTTGTCAGCAGTGGACGGTTGGGACGTGAAGAAGGGTCTGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAAGGGGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCAA # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3989469-3989796 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP088019.1 Pectobacterium carotovorum strain 25.1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3989469 28 100.0 32 ............................ ATGCGTCAGCAAATTACTGAACTGGGGTTTGA 3989529 28 96.4 32 ............A............... GCATCAAATTCTATAATGCATCGAACGTGCTG 3989589 28 92.9 32 ...........CA............... CACAGGGTGGCAGCGATGCTGATTACAAAAAA 3989649 28 100.0 32 ............................ ATTCGTCAGCAGTCATAATTACCTCGCCGCAG 3989709 28 92.9 32 ............A....T.......... TAGGACCAATTGACTCATAATCAATTGGTCGC 3989769 28 71.4 0 ..G........AAC......TGA.C... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 92.3 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTGACCGGACGAAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGTGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCCCCTCCTTAATACAGAAATTCAGCCAGCCACTTACCGTTTATTATTGCTGGCTAAAACATAAGCTAAGTATAGATATTAACCACTCGATTGTATATCCATAGCATATGCAGATACCTGACATAGACCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTACGCATCGTCGTAACTCATTGATTTTTAATTTCGATTATCTACGCTGATAAAAAAGGGGTTTTCAGGAAAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAAC # Right flank : AATAAAACGCCGCAAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTACTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAAGTGCGGTTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACAAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3996309-3996635 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP088019.1 Pectobacterium carotovorum strain 25.1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3996309 28 75.0 32 C.AAG......TGT.............. GGGCAGAAAACGCAGACACGGCGGGTTGTGGC 3996369 28 92.9 32 .............T......T....... GGTTACGCTATCCGGCGTAGCTTCACTGCTCC 3996429 28 85.7 32 .......A.T.T.T.............. GTCAGTGATTAACAGGTCAAAATACAGTGCAT 3996489 28 100.0 32 ............................ TGTCACGACGAAATAGACCGCAGAACGCGACA 3996549 28 89.3 32 .C.........T.T.............. TATTCCTGTTTGTTTATAGTGATTACACTCTT 3996609 27 78.6 0 ...A...A...TG........-....T. | ========== ====== ====== ====== ============================ ================================ ================== 6 28 86.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTGTACATAACGTCTTTAAAAAATACGTCGCTTCCTGCGCAGTCAACATGGCATGAATGTTATCGTTATTTATTTCATTTAGTTGTGCGTGTAATTTCTGATAGTTAATATCTGCATGCTGCTTTTTAAAATCAAGATGATCTTCTAACCGATAGTCATCATCCACAAGCGTTTTTAAAACCGGATCGTATTTCACAGTCACTCACTCCCTTGAATTTGACTTAAGTCAACGAACTATTTCCCTGTAAGGGTACTTTAACGGAAAAATGATGATTTTTAAATATTAATAATACCCAATACACAATTTGCATTCCCTTAAAAAGAAACTTATTACTTAAAAACGTTACGAAATAAGGTCATCAATATGCGTTATTTAAGGGGGTGAGCGCTGGCGCAGTACTACCTCGATAATAGCCAGACAACAGCGCTTGAGGCCGTGGATAAACTGCCTGTGCGGCAGTGAACCTGCTGGACGAAACATTCTCGATATCAGAGCCTTT # Right flank : ACTTATCGAAATGCGTCGCTGGCGCGACGCATTTCGTGGAGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGATAGTACGGTTCATCCTCCGGCACTAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAATACCTGCATCAGCCCGACGTTTATCTGACGCAGTCCGGTGACCTGTGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATCGG # Questionable array : NO Score: 3.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.35, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [9-9] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //