Array 1 5921-6618 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_UJEP01000043.1 Klebsiella pneumoniae strain EuSCAPE_RO055, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
      5921	    29	  82.8	    32	AGTA.T.......................	TTCTCTCCGCCGGGCAGTGTGATGCCGGAGGG	
      5982	    29	 100.0	    32	.............................	TAAATCAGCAAATCTTGTTGTCTACCGTGTCG	
      6043	    29	  93.1	    32	............TC...............	AAGTTATTCATGTCGCCATTCACGTCGGCGGC	
      6104	    29	  89.7	    32	.....T......TA...............	AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG	
      6165	    29	  93.1	    32	............TG...............	CCGACCCGGTGCCCAGGAGAACTGGCTGAATA	
      6226	    29	  93.1	    31	.............G.A.............	TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 	
      6286	    29	  89.7	    32	.............A.T..........T..	CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC	
      6347	    29	  93.1	    32	............TC...............	TTACGCATTGTGATCAGGATTCGCTTCAGACG	
      6408	    29	  93.1	    32	.............A.....T.........	AATGGTGACAGGCAGTGCACCGGCCTGGAGGA	
      6469	    29	  89.7	    32	.....A......TA...............	TCGCCCAGTCCAAAGGGGATGATGCAGGATTG	
      6530	    29	 100.0	    32	.............................	GGCATGAGCGCGAACCACTGCGAGAGTGTGGT	
      6591	    28	  86.2	     0	..........A..A........-.....A	|                               	
==========	======	======	======	=============================	================================	==================
        12	    29	  92.0	    32	GTATTCCCCCCGCTTGCGGGGGTTATCGG	                                	       

# Left flank :   TGATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAGGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACTGGCGCAGAACTCCGCCATCGCATGAGTATTAAAAATGCGACTGATGAAGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCTGCCGAACCACGTTTTGGGGGGCATGCGAATCATAACTGCGGTCTGGTTGAGGCTCACTGGACAGTAACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTATTATTTTATAATCAACCGGTTATTTTTAG
# Right flank :  ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACATGATCGGCTTCTCCGTCACATTCTTTCAGCTCAGCACCGAAATCACCGCAAACTTCACCTGCATACTGATTTACTTTTTCCAGATGTAACTCACCGAAAA

# Questionable array : NO	 Score: 5.15
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTCCCCCCGCTTGCGGGGGTTATCGG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.10,-12.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [10-11] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.18,0.74   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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