Array 1 198115-199371 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJDA01000004.1 Klebsiella pneumoniae strain EuSCAPE_LU010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 198115 28 89.3 33 ...........ATG.............. CACCTGGCATATGCACGGTTTTCAGGAATTTTA 198176 28 89.3 33 ...........ATG.............. CTTCTTCCCCATAGAGGTGATGTTAAGCATTCC 198237 28 89.3 33 ...........ATG.............. TAGCGTGATCAATAGCATTGTCCAGGTGGGCGT 198298 28 89.3 33 ...........ATG.............. TGCCTGAAAAGTTTCGCCCACGCGGTCTGGATC 198359 28 89.3 33 ...........ATG.............. CGAAACCCAGATACCGGTAAGCCAGATTCTGGC 198420 28 100.0 33 ............................ CGGGCGATAAAAGCGTTTATCGAACGCTGTGAA 198481 28 100.0 33 ............................ CGGGCGATAAAAGCGTTTATCGAACGCTGTGAA 198542 28 100.0 33 ............................ TGATTGAAAAGCTGGCTGTGAACAAACAACGCG 198603 28 100.0 33 ............................ CCCAAAAATTTTGCAGATGTGGAAAGACATTAA 198664 28 100.0 33 ............................ CAAATTCGTCCGGGTCAGCCAGGACCATCAGCG 198725 28 100.0 33 ............................ CGGAAAGCAGCGGTGAGAAGGCGCAACATGCAG 198786 28 100.0 33 ............................ CGGCTTTTATATCGGGCCACTTTTTAGTGGAGG 198847 28 100.0 33 ............................ TTTAGCGCCGTTGACGCACTGGAAGCCATTCAG 198908 28 100.0 33 ............................ TCATCATCCAGGCGCTGCCCGGCGCGGTTTATC 198969 28 100.0 33 ............................ CTTGCCGCGCATCGGCAGTTATCCTGCCACCAC 199030 28 89.3 33 ..............T.......G.G... TCGCATTCCGCCTGTTTGTTAGCCTGAAATGGC G [199047] 199092 28 100.0 33 ............................ CGGAGTGCGCTCGCATACTCACCCTCGGCAGAT 199153 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA C [199158] 199215 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT 199284 27 85.7 33 ......A...T.T....-.......... TTGTGAGGGGTCTACCAGCATTGGCGTACTGGA 199344 28 67.9 0 ........T..A..T......C.TAGCA | ========== ====== ====== ====== ============================ ========================================= ================== 21 28 94.7 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTTGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : AATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAAATGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCTGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAAAATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTGGCTTGTTGGTGTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCGA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 575848-579107 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJDA01000002.1 Klebsiella pneumoniae strain EuSCAPE_LU010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 575848 29 100.0 33 ............................. GCCCGCGCGAACCTGGGGCTGGGAGATTCAGCG 575910 29 100.0 32 ............................. CCTCGATCATTCTTGCCAGTTGGGAGTCGGAC 575971 29 100.0 32 ............................. CACCTCGCCTATAAATCGTACCAGCCTGACAG 576032 29 100.0 32 ............................. TCGTAGCTAATAAATTCGTTGCTCATTTGAAA 576093 29 100.0 32 ............................. GCATCGCTCGCCTCGTTCGGTGCTAACGCTGG 576154 29 100.0 32 ............................. CGGCTGCGCTGTTGCACATAGCCGCTCAACCT 576215 29 100.0 32 ............................. CGGCCGCGTTCTCCCCTGTGGGAGGGGTGGGG 576276 29 100.0 32 ............................. GAATTTATTGGGAGGTGATAGCTCTGGCAGGT 576337 29 100.0 32 ............................. GGTATGCAGGGCACACGCCAAAATAATTTTGC 576398 29 100.0 32 ............................. ATACGCAGTCATTAATCGCGGGTGTTACGCAA 576459 29 100.0 32 ............................. CCTGCTGTCATTTCCTTCGGCACTACCGGCGC 576520 29 100.0 32 ............................. TTACACAAGAGAAGCACTGACAACCATTCACA 576581 29 100.0 32 ............................. CCTAAATTGCCAATTTTCCTTGAGCGCTGGTA 576642 29 100.0 32 ............................. GTAACAGGTCAACTCTTTATCGCTAACGGCTC 576703 29 100.0 32 ............................. CTTTTCATTTTCTCATGACCGCCACCATTTCG 576764 29 100.0 32 ............................. AATACCGGCGGCAGGGATTTACGCCCGAGCAG 576825 29 100.0 32 ............................. CGCACGGTGCATTCACGCCCGCGCGCCTGTTT 576886 29 100.0 32 ............................. CATCGCTTTCCATCGCAGCTTTTTCCAGGCGC 576947 29 100.0 32 ............................. GTGACGCGCTGCAGTTTGCCAAAACCCTGCCA 577008 29 100.0 32 ............................. ATTTTGCGTACGCTCTCCCACAGCTGATCGTG 577069 29 100.0 32 ............................. TTTCCGGCAGCGTAGCCAACCCGGCCAACCGT 577130 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 577191 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 577252 29 96.6 32 A............................ GGTTTATAGAGGCTGAGGTATTCACAATGCGC 577313 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 577374 29 100.0 32 ............................. GGCCTGAACCAGAGCACGATCTACACCTGGAA 577435 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 577496 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 577557 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 577618 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 577679 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 577740 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 577801 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 577862 29 100.0 32 ............................. GGCCCAGTAATCCCCGCGAAGTCCTGAAGACG 577923 29 100.0 32 ............................. GTTGCGAAGCCTACGTCCAGATCGTAGAGATA 577984 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 578045 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 578106 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 578167 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 578228 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 578289 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 578350 29 96.6 32 .....A....................... GAATATAAAACCAGATTCCATATAGCCCTGTG 578411 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 578472 29 100.0 32 ............................. TACAGGACGCACTGGCTGCGAAGCCGTTCGCG 578533 29 100.0 32 ............................. TCGCTCTGTGTCATACGGTTATTAGCCCTGGA 578594 29 100.0 32 ............................. AATTTGCTCATAGAATTGAGACAGTAAACTTT 578655 29 100.0 32 ............................. CCGAAATGGATACCGCCGCGATTGAGTATTCG 578716 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 578777 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 578838 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 578899 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 578960 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 579021 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 579079 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGTG # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTCTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCTTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //