Array 1 925156-932121 **** Predicted by CRISPRDetect 2.4 *** >NC_004829.2 Mycoplasma gallisepticum str. R(low), complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 925156 36 100.0 30 .................................... ATTTTCTCTTGGAAAATTACCAATTATACC 925222 36 100.0 30 .................................... CAAGATTTTAAATTCTGTTATAATCACCAC 925288 36 100.0 30 .................................... TTTTGCAACAGCTGGAATCGTTAGTGTGAT 925354 36 100.0 30 .................................... TTTAAGTGCGCTAAAACAAACTTTTTGTTA 925420 36 100.0 30 .................................... TTTAAGTGCGCCAAAACAAACTGTTTGTTA 925486 36 100.0 30 .................................... ACGAATCAAATTATTATTTGAATACAATCG 925552 36 100.0 30 .................................... TCGCGCGAAGAATAGTATAACACTTGTTTA 925618 36 100.0 30 .................................... AATTTAAATATTTGTTTATAATTATTATGT 925684 36 100.0 30 .................................... TATAGAACCTGTTGCTCTATTTGCTTTTGA 925750 36 100.0 30 .................................... TATTTTTTAAATGTGTAACCTTCTTTTTCA 925816 36 100.0 30 .................................... TAAATAATTTACTCGCATTAACTTTAGCTA 925882 36 100.0 30 .................................... AGAATAAAGGGTTAGATAGTTCTTGTTTTT 925948 36 100.0 30 .................................... TCCCATACAAAACCCGTCTTTGGACGGGTT 926014 36 100.0 30 .................................... AAAGCAAATAGAGTAACAGGTTCTATAACC 926080 36 100.0 30 .................................... AAATTTAAAATTGCCTATTGAATTCGTGAA 926146 36 100.0 30 .................................... TTTTTGGTTTAAAAAAGAACCACAGGGTAA 926212 36 100.0 30 .................................... AGTTAACATCAATGTAATAAATTTGACCTA 926278 36 100.0 30 .................................... ATGTTAACTCGATGTATCCTTACGTAATGA 926344 36 100.0 30 .................................... CTTTTTGTGCCAATTTACCGTACAAAGAGT 926410 36 100.0 30 .................................... AAAAACGTCGTCAATTGCGCTAGATCAGCC 926476 36 100.0 31 .................................... CAAGTCGATATAATTAAGCTATTTGATCCTA 926543 36 100.0 30 .................................... CGCCTAATAACCCACTACTAAACGCCACCC 926609 36 100.0 30 .................................... ATTAAAATTTAAATTATAAAATTCGCCAGC 926675 36 100.0 30 .................................... CTACTTCATTAAATCTACCCTCTGGAATAA 926741 36 100.0 30 .................................... TTAAAAAACGCAATTGTATCGTTTTGACGA 926807 36 100.0 30 .................................... CACACGATTGTCTTAAAGTCAAATCCTTCA 926873 36 100.0 30 .................................... GTTGAGCTAATTGGACTTAAAGCAAATATT 926939 36 100.0 30 .................................... TTGTTGTCGTAAAAATAGTTGATTGTATCG 927005 36 100.0 30 .................................... AGACTGTTTGGTGTAACTATTTATGTCGTA 927071 36 100.0 30 .................................... CACACGATAGTGTTAAAAACAAACCCATCG 927137 36 100.0 30 .................................... TTGTTTGATTTATTGGGTCGGTATAAGTTG 927203 36 100.0 30 .................................... AAATCTGAATGTTTGGTAATCTTCATGGTG 927269 36 100.0 30 .................................... TCGAAGTAGGCAAAACTTAATATTACGACT 927335 36 100.0 30 .................................... AATGAAGTAGATATCGTTAACTTCTTTTGT 927401 36 100.0 30 .................................... GTTTTGTCAAAATTAAATGTTACGGACTTA 927467 36 100.0 30 .................................... TTTGTTGCTGGTTTTATAAACTAAACCACT 927533 36 100.0 30 .................................... AGTTGGTAAGTTAAACGTAGTTGTATTAGT 927599 36 100.0 30 .................................... AAAAAATAATTGAGTCAGTGTCGCAATATA 927665 36 100.0 30 .................................... ATAAAAATTTATAAGATCGCTTATGTAGTT 927731 36 100.0 30 .................................... CTCTAATCACTCACGTTTAAGTGTTTTGCG 927797 36 100.0 30 .................................... TACGTCGTTTAACTTTTTGGTTCTAAAGAG 927863 36 100.0 30 .................................... AATTTTTTCAAAAACTATTGACAAATTCAA 927929 36 100.0 30 .................................... AAGTGGTGTAGTTAGTTATAAAGGGTGGGT 927995 36 100.0 30 .................................... TAGAACAAATTAATCGAGATTTGCAACTTC 928061 36 100.0 30 .................................... TTGACAATCTTATGATCTCAACTCACCCGC 928127 36 100.0 30 .................................... CGTTCGGTTGAGCCGTAGTTTTCTGTCGTA 928193 36 100.0 30 .................................... ATATTTAAAGTTGTTAAATAGCTTAACGGT 928259 36 100.0 30 .................................... AAAAAGTTGATATTTTGGTTGCCCAAATAG 928325 36 100.0 30 .................................... AATCCAACAAACGATACGGATGGTGTTAAT 928391 36 100.0 30 .................................... TTTGTATAGCTATTTATGTCATAGATATAA 928457 36 100.0 30 .................................... TTAATCTTAAAATAATAACTGTCTACTTGT 928523 36 100.0 30 .................................... TAAATGTTGACAAAACACTTGGAATGTTGT 928589 36 100.0 30 .................................... TGTCCCAGTTTTTGGTGTTCTATTTAATGA 928655 36 100.0 30 .................................... TAAAGTCCATTAAGCTAACAATTTTACTCA 928721 36 100.0 30 .................................... TTGGGTCGGTATATGTTGCTAATTTATAAA 928787 36 100.0 30 .................................... GAATCAAGATAAAAACAAAGTCGTGATCTC 928853 36 100.0 30 .................................... ATCCATCACTAGAATTTGGTTAGCACGATC 928919 36 100.0 30 .................................... TTAATTTTCACAATTGCGGTTGATAGTGCT 928985 36 100.0 30 .................................... TTAAAAAACGCAATTGTATCGTTTTGACGA 929051 36 100.0 30 .................................... AAAAGCATATTGTAGAAGTTGTAAGTAACG 929117 36 100.0 30 .................................... GTTTTGTCAAAATTAAATGTTACGGACTTA 929183 36 100.0 30 .................................... TTTGTTGCTGGTTTTATAAACTAAACCACT 929249 36 100.0 30 .................................... AGTTGGTAAGTTAAACGTAGTTGTATTAGT 929315 36 100.0 30 .................................... AAAAAATAATTGAGTCAGTGTCGCAATATA 929381 36 100.0 30 .................................... ATAAAAATTTATAAGATCGCTTATGTAGTT 929447 36 100.0 30 .................................... CTCTAATCACTCACGTTTAAGTGTTTTGCG 929513 36 100.0 30 .................................... TACGTCGTTTAACTTTTTGGTTCTAAAGAG 929579 36 100.0 30 .................................... AATTTTTTCAAAAACTATTGACAAATTCAA 929645 36 100.0 30 .................................... AAGTGGTGTAGTTAGTTATAAAGGGTGGGT 929711 36 100.0 30 .................................... TAGAACAAATTAATCGAGATTTGCAACTTC 929777 36 100.0 30 .................................... TTGACAATCTTATGATCTCAACTCACCCGC 929843 36 100.0 30 .................................... CGTTCGGTTGAGCCGTAGTTTTCTGTCGTA 929909 36 100.0 30 .................................... ATATTTAAAGTTGTTAAATAGCTTAACGGT 929975 36 100.0 30 .................................... AAAAAGTTGATATTTTGGTTGCCCAAATAG 930041 36 100.0 30 .................................... AATCCAACAAACGATACGGATGGTGTTAAT 930107 36 100.0 30 .................................... TTTGTATAGCTATTTATGTCATAGATATAA 930173 36 100.0 30 .................................... TAAATGTTGACAAAACACTTGGAATGTTGT 930239 36 100.0 30 .................................... TGTCCCAGTTTTTGGTGTTCTATTTAATGA 930305 36 100.0 30 .................................... TAAAGTCCATTAAGCTAACAATTTTACTCA 930371 36 100.0 30 .................................... TTGGGTCGGTATATGTTGCTAATTTATAAA 930437 36 100.0 30 .................................... GAATCAAGATAAAAACAAAGTCGTGATCTC 930503 36 100.0 30 .................................... ATCCATCACTAGAATTTGGTTAGCACGATC 930569 36 100.0 30 .................................... TTAATTTTCACAATTGCGGTTGATAGTGCT 930635 36 100.0 30 .................................... TTAAAAAACGCAATTGTATCGTTTTGACGA 930701 36 100.0 30 .................................... AAAAGCATATTGTAGAAGTTGTAAGTAACG 930767 36 100.0 30 .................................... TGACTTTAAATGATATCCGCAACATTGATA 930833 36 100.0 30 .................................... TTATTATCAAAAATGCCAAGACAACAGTCT 930899 36 100.0 30 .................................... TATTTGTCAATAAGCCGTCTTGAGTTCGTT 930965 36 100.0 30 .................................... CAAGACATTTTAATGTTACTAAACGGTCTT 931031 36 100.0 30 .................................... GTTATGCAGATAAGTTTCACACCGACTACT 931097 36 100.0 30 .................................... TTAAAGTGCCGATAGTTTGTCAGATGTGTT 931163 36 100.0 30 .................................... TGTCAAATATATAAACGTGTTTTAAGTTAG 931229 36 100.0 30 .................................... AAAACCAGCTGATTTAGACGACACAAATAA 931295 36 100.0 30 .................................... TCTTAATCAATGAACCCGCACCATATTTTA 931361 36 100.0 30 .................................... TTCATTAAACCAGATTTAATTTATGGTGCA 931427 36 100.0 30 .................................... CTTTTATCATAATACTTATTGTAAAATTCG 931493 36 100.0 30 .................................... TTTCTTGATATAAGGATATAATATAATCAT 931559 36 100.0 30 .................................... AAAAACTTGACAAAATTAAAAATAAAAGTT 931625 36 100.0 30 .................................... AAAATTCTAATTAACATTCATCCAGGTTCT 931691 36 100.0 30 .................................... TGTCGCTATACCCAAACCCAAGTTTTTCCA 931757 36 100.0 30 .................................... TTAACTTTAGTTTTTCTGAATTTAGTCTAT 931823 36 100.0 30 .................................... TATTACAGATATAAAAGAAATTAAAAAGAT 931889 36 100.0 30 .................................... TTTAATGTGTATTTAGCGTTATGGTTTTTA 931955 36 100.0 30 .................................... AAAAATAGGTACAAAAAATTGTTTTAAGTT 932021 36 100.0 29 .................................... ATAAACTGCAATTTTTTCTCGATGAACCA 932086 36 97.2 0 .............G...................... | ========== ====== ====== ====== ==================================== =============================== ================== 106 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : TTGATAAAGAAGTTGTTGCTAAACTTAATGAAACGTTAGGTCGTGATATTATTTCGTTAGATACTTCTTACTCTAAGATTCTGAAATCAATAATAAAGATTTCAGAAGACTATATAGATCATGAATTTATCTATTCATATTTAGAATTATTACATTGATCAAAAGAAGTTAAAACAGTTATTCTTAAAGACTTTGATAATATCGATCTAAAAAGGTTAAGTAACTTAACTCAAACTACTAATTTAATTATTATGAAGAATGATATTATCTATGATCTTGAAAAAAATTTTGAGTTTTTTGAGACATACTGTTTAATTGATCATGATTATGAAAATATGATTAAGATTGATAATATGCCTTCTTTTGAATATTTATTAGAAGATATTTTTAAAGTTATGGTTGATGATGAGTTTAAGACCACAATGTCTTTTCAACAGCTAGAAATAGTAAAAAAGGAATTAAAAAAGCATATTAATTAGCTTATTTTACTTGACAATGAG # Right flank : CAAAAACAAGTATTTTTTATAAACGAAAAAGTTTTATCATTAAACATATTTAATCTGAAACAAAATTTTGAAATAAATAAACTATTACTTAATCTTTTGTTTCATATTAAACAACATAATTCCAGTTGCTACTGAGACGTTTAAGGACTGTATCTTATCAGTATACATCGGGATCTTGATCTGGTAATCAGCATTCTTAATTAGTTGACTCGAAACTCCCTTTTGTTCGTTCCCAACAATTAAGATTGATTTATTAGCATAATCAACATTATAATCTTGAGCTTGATCACTTAAATTAGACACATAAGATCAAAAGCCATACTTTTCTTGTAAATCTTTGATGGCATAAGATAAGTTGGCAACCTCAATTAAATTAAGATAAAAACATGCACCTAGTGATGTTTTTATCACTGTGTTGTTAATACTTACTTGGTTGTCTTTTTTAAAGATGACCCCAAGCACATTTGCTGCCAAACAACTCCGTAAGATTCCACCAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //