Array 1 46001-45036 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LZOZ01000008.1 Haemophilus sp. CCUG 60358 contig_16, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
     46000	    32	 100.0	    36	................................	TTATTTTCTTTATAATCAGATAAACAAGATAAAAAG	
     45932	    32	 100.0	    34	................................	GCTGATCTTGTCGTGGATTTCCTCGCCTAATTTC  	
     45866	    32	 100.0	    35	................................	ACGATAATTGACATAAGCTCTACTCATTTATCTAT 	
     45799	    32	 100.0	    34	................................	TGACGGTCTGTAATACCATTTTTTCTTTTGACTT  	
     45733	    32	 100.0	    34	................................	AACAAAACAGATTCCCACATAGTGGGAATTTCCA  	
     45667	    32	 100.0	    34	................................	CAGTCTAACCCGATTCCCTCAACAATCTCACGCA  	
     45601	    32	 100.0	    33	................................	TCTTATTGTCGGCTCCATGCTGTCTGTAGGCAC   	
     45536	    32	 100.0	    35	................................	TTAATTGTTGCTTTTTCTGTAAAGAAATTTCTTTC 	
     45469	    32	 100.0	    36	................................	AATATTTGATGCGGTGCAAGGTATAAAATGAACCAG	
     45401	    32	 100.0	    35	................................	TTGTTTGGTGACCTGACAAATACGTTGATATAAAC 	
     45334	    32	 100.0	    35	................................	GCTAAAGCTTCTTGGCTGATGGTTGCTACTTTTAC 	
     45267	    32	 100.0	    35	................................	TTGTTTGGTGACCTGACAAATACGTTGATATAAAC 	
     45200	    32	 100.0	    34	................................	AATCCAAATAGCACGGATTTTGTGGGCAATGTTG  	
     45134	    32	 100.0	    35	................................	AGTAAAAGACGATGGCTCGATTGCTTTTGCCCTCG 	
     45067	    32	 100.0	     0	................................	|                                   	
==========	======	======	======	================================	====================================	==================
        15	    32	 100.0	    35	GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC	                                    	       

# Left flank :   TTGATGAGATAAGCTATGTTAATGCTGATTACTTACGACATTTCTTTTGACGACCCAAACGGGCAAGCACGATTGCGCCGTATCGCAAAACATTGCTTAGATTACGGCGTGCGAGCACAATATTCAGTATTTGAATGTGATGTCACACCTGACCAGTGGGTTATGTTGAAAAACAAACTGTTGGAAACTTACGACCCCACGTGTGACAGTCTGCGTTTTTACCACTTGGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCGGCAGTAGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGAACCTTATTTTCTTTAACAATTTGAATGAATTAATCTATTTGTATAACGGCGATGCGGCCGTTATACTGACTAAACTCCTTATCATAAAATCCGTTAGCGAAATACAGTGTTTAATACGCTGATTTTTCTTGCTTTTTTAGGTAGGGA
# Right flank :  AAAACTTAATAAATTTGAATAGTATAATATTTACCTTCCTACTCTATCTCTCAACCCGATTCATACCCAACAACATTTCCCCCTTGTTTTTCCTCCTTATTCGCTCTAGACTATGCCCCATTTTTAGCTTTCATTATTTACAATTATGCGTGTTTCTGACTTTCATTTTGACTTACCAGATGAGCTGATTGCTCGTTACCCTAAAGAAGATCGCTCTTCTTGCCGATTGTTACAACTCAATGGTGAAAACGGGGAAATTTCTCACCGCACTTTTACCGATGTATTGGATTTAATCGACGAAGGGGATTTGTTGATTTTTAACAATACGCGCGTGATTCCTGCTCGTATGTTTGGTCGTAAAGCCAGTGGCGGAAAAATTGAAGTATTGGTTGAACGTGTTTTAAGTGAACATCATTTCTTAGCGCATATTCGTTCGTCAAAAGCACCAAAAGAAGGCGCAGAATTATTTTTAGGTGAAGATAAGCTAGGAGAAAATAATG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-5.20,-6.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,4.87   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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