Array 1 8255-11562 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXDR01000222.1 Xanthomonas oryzae pv. oryzae strain BXO33 contig_222, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8255 31 100.0 34 ............................... AGTCGCCAGTGAAGTCTCCCAGATGATCCCCCAA 8320 31 100.0 34 ............................... TCAGCCTCAGTGGCAGCAGCCACGTTGACGGATG 8385 31 100.0 35 ............................... CACCCTGTAGCTCGGAAATTGCCTGTCTGACGACT 8451 31 100.0 34 ............................... CTGCACGTATTCAATCAGCGCGCTGTCGGTGCGG 8516 31 100.0 34 ............................... GTAATTGCAGCAGGTAGCAAAACATCAAAGCCAT 8581 31 100.0 36 ............................... TTGACCGTCGCGCCGAAGCTGCGCTGCGCGCGCACC 8648 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 8714 31 100.0 36 ............................... TATGTCGGCGGCAAGAAGTCCGAAAAGCAGCTGCGC 8781 31 100.0 33 ............................... TCCCAGCAGGCCTTAACCGCATGGTCTTTGCAG 8845 31 100.0 33 ............................... AGAGGTGCTTGTTAGTGCTACGGGGGCGTATGC 8909 31 100.0 35 ............................... TGGGATCAGCGCACGGAATATGGTCGTCTGCGTGC 8975 31 100.0 34 ............................... CTGATTCCACTGCTCGATTGCCTTGAGGGTGTCG 9040 31 100.0 34 ............................... CTCAAGATTGCACAGTATCCAGAGGAGGTGACAA 9105 31 100.0 34 ............................... TGCATCTCCTCTGGACTGCTTCTAAACTCAGCAT 9170 31 100.0 34 ............................... CGTCAATACTGATCTTGCCTGCTATCGTCTCCAA 9235 31 100.0 33 ............................... CCAGGTGAGCGGAAGTCGTTCCTCTGGCTCAAC 9299 31 100.0 35 ............................... CAGCTGATGCTGGTACTTCAGCTGCTGAAGCTTCT 9365 31 100.0 35 ............................... CTGTACGGATGCAGCAGATTCTGGGCGCTTGAAGT 9431 31 100.0 35 ............................... ACATGTTCGTGACTACTTAGGAGATGAACGGGAAA 9497 31 100.0 35 ............................... AGCAGCACAACGACGAAGAATTACCCGGTCCAGGG 9563 31 100.0 35 ............................... ATGGCAATGCGCAAAGCACATGGCAACACTGCCAC 9629 31 100.0 34 ............................... AAGAGCCTACGGAGCCGGGGCAGCATCCATTGCA 9694 31 100.0 35 ............................... TTTCAAATGAGCGATATGCACCTGCCCACTGACAG 9760 31 100.0 33 ............................... TTCCCTTGTATGGTGAGGATGGTCAGTTGGCAT 9824 31 100.0 34 ............................... TACAGTTAACAAGTGTGTTGAGGCAGGAGTAAAA 9889 31 100.0 35 ............................... ACCATGTACTATGTAGCCCTTTCCCTTGTGTGTGA 9955 31 100.0 34 ............................... TCATACACCTACCTGCCGTTTGAAAGTGTGTACG 10020 31 100.0 34 ............................... ATGACAACAGGATTGCAAATTTGAAGAAAAGGAC 10085 31 100.0 37 ............................... TAATATGTTGCGGACATAGGGTGGACAACCCTTGTTC 10153 31 100.0 35 ............................... TGTAGGTCCAGGCTCCCTGGCTCTGGCCTTGGTAA 10219 31 100.0 35 ............................... AGGTTACCTTGGCTCGGAGGCACTCAGCAAAGGTG 10285 31 100.0 36 ............................... AGCCAGACAATCAGCAGTATCAGCAGTGCAGACCAC 10352 31 100.0 33 ............................... TCTTCTAACTACATTATGTCGGCGGAGCTATAA 10416 31 100.0 35 ............................... CGGTACTTGTAGATAAACTCCTGCACCCTGAGCAC 10482 31 100.0 35 ............................... AGCAGCACAACGACGAAGAATTACCCTGTGCAGGG 10548 31 100.0 35 ............................... CTGCACTGCGTCGCCACGCGCATCGACATTACGAA 10614 31 100.0 33 ............................... CCCGAGTCCAAGCCATACCAGACGGCGACGACC 10678 31 100.0 34 ............................... TTGTGGGACACGGCGGATATGGAGATGTGGGAAA 10743 31 100.0 35 ............................... TCGTAGAGCGTGACAGTGCTGGGAAGGTCTTGAAC 10809 31 100.0 35 ............................... GCATCCACAGCAGGGATGCTTGCTCAACAAAGTGC 10875 31 100.0 34 ............................... GTCGGGTCGACGGACGGTCGTAGCTCACCCACAC 10940 31 100.0 34 ............................... CGGACTCAGTGGTGATCCGGTATAACCGAGTTGC 11005 31 100.0 35 ............................... CTCGCCAACGTGTGGGATATCAGCACCGCGACGGG 11071 31 100.0 35 ............................... CTGACGCGCCAGCCTGCGACGTACGCAACCGTGAC 11137 31 100.0 35 ............................... GCGCTGGCCGCCTTTACCTGGCGACTCCATCACCT 11203 31 100.0 35 ............................... TCGCTAGACTCGCAGGACTACGACAAGGTCGAAGC 11269 31 100.0 34 ............................... GACCGTGTTGCCGTGCGACTCGTAGCCGACCGAC 11334 31 100.0 34 ............................... TGGGGCGTGTTTGCGTTTCCCCCGTCCGCCGGTG 11399 31 100.0 35 ............................... TCGGGGCAAAAAGTTCGCGTCAATGCGCACGGATT 11465 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 11532 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 51 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACACCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : AAGATCCTGATTAGCCCTGACCTTCAGCTGCAGCACCTCCGCGCTTATCGCTAAACCGGCCCAATGCCAGGCCGCCATGGGGCCCTGGCTGAAAGAACTTCGCACCGGCTCCTCGCGTCAGGAGCGCCAAGATCAGACATCATGGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //