Array 1 94633-93704 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNQO01000005.1 Klebsiella oxytoca strain 404813-5-17 404813-5-17_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 94632 28 100.0 32 ............................ TATATCGCTGGGCCTACGAACGTGGTTTCGTT 94572 28 100.0 32 ............................ GCGCGCTCAGCTCGATGAAGCAATCAGCAACC 94512 28 100.0 32 ............................ AGATGGCATCGCAAGGCCGGTATCAGGGATTA 94452 28 100.0 32 ............................ ATCAGTTATGACCGGGCAACCGGCGCGGTCGA 94392 28 100.0 32 ............................ TTAAGTTTTCTGCCGCTACATTGTATTCACGC 94332 28 100.0 32 ............................ TCACATAGAGCCAGCCACCGCCGAAGAAGCAC 94272 28 100.0 32 ............................ TGCAGGTGGTTTACATGGCGAGGATTGCGGCC 94212 28 100.0 32 ............................ TCAAATCATCGACACCGGCGCTTATGATGGAA 94152 28 100.0 32 ............................ GCTTTCGCGGCATATCCTCGCCGTCAAAAAGA 94092 28 100.0 32 ............................ TTACGAAAAATTGCCAAAAGATGTTCGTGAAG 94032 28 100.0 32 ............................ CAGAAACAATGTGATGGCGCTTGGTCTGCCGC 93972 28 100.0 33 ............................ TTGCCATCAGGCGCATACACCGGCGGGGATCGG 93911 28 100.0 32 ............................ ATGATACAGGCATATGAGGCCGTTAAGCCCAC 93851 28 100.0 32 ............................ TACATCGGGGTCAGTGTCGCCAATGGTTGGTG 93791 28 100.0 32 ............................ TTCACGGCACGCCATGCCGATTCCAGATATCC 93731 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGTAGCCCCGAGCGGCTGATGCGCCGCTCGGTGAGAAAAGGCTGGCTGACGCAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCGACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCAAATGGGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATTGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTTGTCGAGTGCTAAAACAAACCATAACCGGCGCGGTCTTTCGCGCCGATTTTTTAATCGCTAATTAAAACCCTTTTTTATGATGAATCACTATCTTATTGATATTAGATAGTGATTTTATAAAAGTCGGAAAAAGGGTTGTAAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTGTAGTGCTTAGGCTTCA # Right flank : TCGTGGCGGTTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAACGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAGTTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 105194-103062 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNQO01000005.1 Klebsiella oxytoca strain 404813-5-17 404813-5-17_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 105193 28 100.0 32 ............................ CTGGAAGAATGTCAGAACTGGCAACCCGTACT 105133 28 100.0 32 ............................ AGGCGCTCACGGCGAGGCCAGTATTTTGCTGC 105073 28 100.0 32 ............................ AGCGTCTTCGCGCGACCGATAAGTTGTTCGTT 105013 28 100.0 32 ............................ TGAATCAGGTCAGGAAATACGCGGCACTGGCC 104953 28 100.0 33 ............................ CGCTACAAGGTATCTTCCATGATCGATCGGAAT 104892 28 100.0 32 ............................ ACAACGCACTCGAGCTCTTTTGCAAGGTTCTT 104832 28 100.0 33 ............................ GATGATAATTTCTATTCGTGGTTTGGCAGGGAG 104771 28 100.0 32 ............................ ATGAAGGAAACGGGGTTCTCCAGTCAGACAGC 104711 28 100.0 32 ............................ GTATACAGCCATCAGCCTCTGACGGGCCGGGC 104651 28 100.0 32 ............................ GCGTGATGCGCGGTTTGCTTCCAGCAAGATAG 104591 28 100.0 32 ............................ ACGCATCCCCCGCAGCTCGTCGGCGCTGAAAT 104531 28 100.0 32 ............................ GTTTACGCCAACAAAATTGAAGGCGATGTGAT 104471 28 100.0 32 ............................ AGTGGGTTATTAAACTGTTTTTTATAGTAAAA 104411 28 100.0 32 ............................ GCGTACGCTCCGCGAACCTTACCAGCAAGTTC 104351 28 100.0 32 ............................ TACGACGACCTTTTAAAAGCTCGCGTTATTAT 104291 28 100.0 32 ............................ AGGAGCGGGTCATATTCCACCGTCGCGGCTTT 104231 28 96.4 32 ..........T................. TCAGTGATAGATATCTGTAACCGGGCGCTGAG 104171 28 100.0 32 ............................ TGCAGCAGCGGGTAACGTTCCTGACGACGACC 104111 28 100.0 32 ............................ CAATACTCACCATTGATGAGCAACGATAAAAA 104051 28 100.0 32 ............................ ACAAATCTAGTCACTATATATCAATTACTTAA 103991 28 100.0 32 ............................ CGGCTCCAGTTCCCTGATGTGAAAGTTAAACC 103931 28 100.0 32 ............................ CGGCTCCAGTTCCCTGATGTGAAAGTTAAACC 103871 28 100.0 32 ............................ TGAAAAACGAGGTCCAATATTGGCCCATGTGC 103811 28 100.0 33 ............................ TCGACGCGCTGGCCTCGCTGCTGATTTCTACGA 103750 28 100.0 32 ............................ TACCGGACAACGATCACCCATTGTCATGTAAC 103690 28 100.0 32 ............................ TGTAATGGCATCGGGAGGCTGTCATGTGGATA 103630 28 100.0 32 ............................ GGCTGCGTCGGGACCCATCACATCGCCAGCAG 103570 28 96.4 32 ........T................... CCTGGCCCCGGCAGTATCTATGATGGTCAGGG 103510 28 100.0 32 ............................ GGAAGAAATCACCGCCATGCTTACCGCAGGAG 103450 28 100.0 32 ............................ TGCCGTGGCGGGGTTGGCTCCAGCCACAATCC 103390 28 100.0 33 ............................ TGCGGCTGCACGACCAGCGTCAGGGAAATCACT 103329 28 100.0 32 ............................ CTCTTCGCGTCTGCGATACCGGAAACGGAGAC 103269 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 103209 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 103149 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 103089 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCACCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGAGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCTAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGTCAGGTGATCGTTGAGCTGGACAAAGAGAAAAACGCGCTGACCTATGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGGACCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTTATTAAAGAGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACTGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAACGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTTCAGGTCAACGGCGGCCGCGTGGAATATGTTACGAGCGAGGGAAAAGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCCGTTAGCCAGGCTGCAATGCGTGAGTTTGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCTGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 118661-118453 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNQO01000005.1 Klebsiella oxytoca strain 404813-5-17 404813-5-17_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 118660 28 100.0 32 ............................ TTTGCCAGCGTCTTCAATAGTTGCACAGCATT 118600 28 100.0 32 ............................ CATCATGGCATCCCAGGCGCCGCTGGCAGCAT 118540 28 100.0 32 ............................ GGATGACCGATCGCATCGGCATTTTTGAATTG 118480 28 82.1 0 ............T.C.....T.C..T.. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCATCAGCAGCATGCTGGTGGCGAAAGGTCTGCCAGGCTTTATCGCTTATGGGGTTTTAGCTGGAGAAGTGGTTGCGCCATGTCTGCTGATTGTGGGGATCCTGACGCGCCCTGCGGCGCTGGTGCTGGCATTCACGATGGTTGTGGCCTGGCTGATGGTCGGGACGGGTAAAACCTTCGCGCTGGATGCGGTAGGTGCGTGGGCGATTGAGAGTCTGGTCTATTTCTTTGTTGGCGCGCTGGCGATTGCCTTCCTCGGGGCAGGCCGATATTCCATTGGCGGAAACTCGGCCTGGCGGTAAGTGCACCAGTGTTTTCTGCCTCACCCTGGCCACATCTTGTTTGCCGGGGTGTCGCCGCTCGTTTTTCAGACCCTTTTCTGGGGCGTTATTTTAAGATATTGATTTTTTAATATTTTTATTCTTGCCTAAAAAAGGGTAAAAGGGCCTTTTATTGATTATTGCATGATAAAACAATAAGGCAGGTGCGCCGGGCTAGT # Right flank : GAGCCATGCTACCCGACGATTACCGCGTAGCATGGCCAGCAACAACATTAAGCCAGTACCAAATCTCCCTGCGGCTGGCAGGAGCAGGCCAGCACGTAGCCTTCAGCGATTTCCGCATCGGTTAACGTCATGGTGCTGCTGACGGTATATTCACCGGAAACCACTTTCGTTTTGCAGCAGCCGCAAACGCCCGCGCGGCAGGCGACGGTAACCGGCACCTTATTGCTTTCCAGCGCTTCGAGCAGCGTGGTGCCGACCGGGGCATAAAACGTTTTCGCCGGCTGCAGTTTGGTGAACTTCAGACCGCTGGTGGCCGCGACGGCGACTGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTCGCGCCCAGCGCTTTCACTTCCTGCTCGACCAGATCCATATACGGCGCCGGACCGCAGGTCATCACGGTGCGCGATGCCAGATCCGGCACGCTTTGCAGTAGTTCAGTCGTTAAACGTCCTGCCACGAAACCGTGGGTAGC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //