Array 1 213994-217992 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022123.1 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1275 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 213994 30 100.0 35 .............................. TTAATATTAAAGATCATATTTATTTTATCTATTTC 214059 30 100.0 36 .............................. GTTTAATTTCTTGAGTGAAAAAATTTTTAAAATGAA 214125 30 100.0 39 .............................. GAATGCAGTAATAGTTCAAATATTGCTCTATCCCTTTTA 214194 30 100.0 35 .............................. AGATTTAATGTAGAAGAAATAAAAATATTAGAAAA 214259 30 100.0 37 .............................. CTTTTAAGTATTAGCTTGAACAATGTTGAGGAATTTG 214326 30 100.0 37 .............................. GCTGATGATAAAACTATAAATATTACAGAAAACACTA 214393 30 100.0 36 .............................. AGACTTTTACAAATGGAGAAATTGAGGTTGTAGAAG 214459 30 100.0 37 .............................. AATTTTGATGAAAGAGGAGAAATAAAAGGCTTTTATG 214526 30 100.0 37 .............................. GGAACTATTAAATGAAGTTGAGATAAAAAATGATGAT 214593 30 100.0 35 .............................. ATTATTTCCTCAAGAGTTGGATTAATTCCACTAGG 214658 30 100.0 35 .............................. TTGTCTTTATTCGTTCTAATTCTTCGCTACTCAAT 214723 30 100.0 39 .............................. TCTCTTTTCCAAGCCTCTATCTCTATAAGTCTTGGTTTA 214792 30 100.0 35 .............................. AATGCTAAGTCATTAACTCCTAATTGTTTATAAAT 214857 30 100.0 38 .............................. GTTAAGTTCCCTGTAAGTCTTCCTAATCCTCTGCCTAC 214925 30 100.0 37 .............................. GGTTCTAGTTGAGTTTCTATCCCTTGTTCTATTTTTT 214992 30 100.0 37 .............................. ATCTTAGATGAAGATTTTCCAGATGACTGTTTTTTTG 215059 30 100.0 35 .............................. ACACTTAAACTTCTAAAATTTTTAAAGGTATATCC 215124 30 100.0 38 .............................. TTTACAGTAACTGGAGAATACAGAGAACATTTAATCAG 215192 30 100.0 38 .............................. GTGCTAGATAAGTTTAAATTAACATTATTTATTAAAGA 215260 30 100.0 36 .............................. ATCATTTACATTTAACTTGTCAATTTCTATTTCATT 215326 30 100.0 38 .............................. AAAACTCCATTAGAAATTATACAAAATGAGGTTGATAA 215394 30 100.0 35 .............................. AAAAAGAAAGCTATTAGAGTAATAAAAGATTGAGA 215459 30 100.0 35 .............................. ACAATTAGGAAAACTGGAATGTATTTAACTGATGA 215524 30 100.0 37 .............................. AACAATTCTTGGCTTTCTATCTCTAATACCTTTTCTT 215591 30 100.0 38 .............................. GGAAAATATGATTTGATCCAAGTTATAGAAATATTTGT 215659 30 100.0 38 .............................. AGAATAATTTATCATAATAATCTACATCTATTTCTAAA 215727 30 100.0 35 .............................. GAGGATCTAAAATATGAAAATGATATAAAATAGGA 215792 30 100.0 35 .............................. GATATGGCAAAAATTGTTTTATCTCTTTATGAAAA 215857 30 100.0 35 .............................. CTTTCTATGACTACTGTTATGGAGGATTCAAAAAA 215922 30 100.0 37 .............................. TGAGTAAATTTATAAAAATAAGTTTACCTCAAATCGT 215989 30 100.0 36 .............................. ATAAAAAAACTGGGAAGAAAACAACAAGGTTAATAA 216055 30 100.0 37 .............................. ATCTTTAAAGATGATGTGTTGAGAGAGATGACAAAAG 216122 30 100.0 36 .............................. GCCATTTTCTTTAAAATTTAAAGACCTTTCAGAAGA 216188 30 100.0 36 .............................. GAGAGAAAATAAAAAATGGGATACATAAAAAGTTGC 216254 30 100.0 36 .............................. TCAAAAAAATTTATAGATAGTTTAGTATCACATACA 216320 30 100.0 35 .............................. GAATGAACCATTTTACTTGTGTTTCCAGCATCAAA 216385 30 100.0 36 .............................. AAGTTAGAACATATGACATTAGATAAATGGGAAGCC 216451 30 100.0 36 .............................. AAGAAAGATTTATAAAATTTAATTTTTTCAAGTTTA 216517 30 100.0 35 .............................. TGCTATTTAATTTACTAGCATTAAAAGTAACTCCT 216582 30 100.0 36 .............................. AAACGAGAGTCCATCATTTCAAACAAAGTCTTATTA 216648 30 100.0 35 .............................. TTACAAAGTAAAAAATATTTTACTTCTATAATTTC 216713 30 100.0 36 .............................. GGAAAAGAAGAGGTATGGTTAAAATTAGATGCTTTT 216779 30 100.0 36 .............................. GTCAATGCAGTAGTCCTTAGAAAAGTAGGAGAAACT 216845 30 100.0 35 .............................. TTAAAAAATTAGAGAATACAACAACAGCTGAAATT 216910 30 100.0 35 .............................. TGTGGATAATATTTCAGAGTATCGGATGAAACAGG 216975 30 100.0 37 .............................. AACTTAAATCAGTAAGTGATGATATAATTCTTCTATA 217042 30 100.0 37 .............................. AAAGAAAATAGAGGATAGATATGTACTAACAGATGAA 217109 30 100.0 36 .............................. GATTCATAACAGATATTTACATTTATATCTGTTAGG 217175 30 100.0 35 .............................. TTAAAAGGAAATTTAACTATAACAGAAGAAACACC 217240 30 100.0 35 .............................. AATGCAGATTTTGAAGAATTGTCTATTTATCAAAA 217305 30 100.0 37 .............................. TACAATATTTTTTATATTTATTCAAAAATAAAAAACC 217372 30 100.0 35 .............................. TTTTTTTGATGTCTTAAACATCTTTTATATTTTAA 217437 30 100.0 35 .............................. CACAATATATTCTTGAGCTTGAAAAAAGATTTTCA 217502 30 96.7 36 .............................G AATGGCTGCTGGATATTTTGCAATATCAAGTTTAAT 217568 30 96.7 35 .............................G CACAACTTAACACCAGAACAAAAAGAAATTTTTGA 217633 30 96.7 35 .............................G AAATCAAAAGATGGAATAGATAAAATTGAAGTGAA 217698 30 96.7 38 .............................G TTTGATAAAGCAACAGCCTCTTCTACACTGATTTTATA 217766 30 96.7 38 .............................G AGAATTTTTAGATGACATTTCTTCTGAAAATATGTCTG 217834 30 96.7 35 .............................G GAAGATATAAAGTTAATAGATGCTATTGAAGTTAT 217899 30 100.0 35 .............................. AGATTCTTAGCAAGACTCCAATTCCATTTCCAAGC 217964 29 90.0 0 .......................-AA.... | ========== ====== ====== ====== ============================== ======================================= ================== 61 30 99.5 36 ATTTATGTATTTCTATATTAGAATTTAAAT # Left flank : AATCTTTTCAAATGTGGTGGTGATAAAATGTATGTGGTTGCAGTGTATGATATTTCATTAGATGAAAAAGGTAATCGAAATTGGAGAAAAATTTTTGGAATTTGTAAAAGATATCTTCATCATATTCAAAATTCTGTCTTTGAAGGTGAATTATCAGAAGTTGATATTCAAAGGTTAAAATATGAAGTTTCAAAATACATTAGAGATGATTTAGATTCTTTTATAATTTTTAAATCAAGAAATGAAAAATGGATGGAAAAGGAAATGCTAGGTTTACAAGAAGATAAAACTGATAATTTCTTATAAAATTTATTGTCTACCTCTCATAATGTAAAATTACTGGAAGATTGACAAAAATCAAAAAAGTCTTTATTTATAAATAAATTTAAGAAAATAAAATAAATTTAAGAAATTAAATTTTTTTATTTTTTACTAAAAAGCTTATATTGACAAAAAGATATTAAAAAAGTATTATATGGGAGTAGCTTTTTTAGGTAGCT # Right flank : TACAGAAGAAAGGGATTGAAAAATAAAGACTTAATGCTGTTATATAACAAAAGAATAAATAAAAAATTAAAAAGATTAACTCTAGTTTTTTATATAAGTTAATCCTTTTTAATAAGTTAAATTAAATTTATTCAATTTTTTAAGGGGAGTACATTTTTTATTGTGTTAAGTATAGCTTCATAAAGTAAACTAAGAATTAAGTATTCATAAAGTAATGGAAAAATTAAAAAAACGAAATTCAACTAAAATATTAATATAATGAACACAAAAATTTAAGATAGAAAATAAAAATTATCAATTATTAAATTAATAAAATTTTATTAAAAATTAAGCGAATTTCAGAATAAAAATATTGCATTTAATCGTAATTGGTGTTAATATATACTTAATAAATTTGAAAGATAAATTTAAAGTTTTATCTACTAAAAATAGGGAGTGATTATAATGAGTTTTTTAGGGCAAGTTAGAAAAAAAGCCTTACAAGCAAACAGAAGAATAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATGTATTTCTATATTAGAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 1170514-1166938 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022123.1 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1275 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================================================================================================================================================================================================== ================== 1170513 37 100.0 37 ..................................... TTTTAAATTCATGCTTCATTATGTAATGTAAACCTTT 1170439 37 100.0 37 ..................................... TCTTTGAAAAATCTTACTAGATTTTTCATAATATCCC 1170365 37 100.0 39 ..................................... ACGGCCAAAGAAGCCATTTGCATTGAATTTATTAATTCT 1170289 37 100.0 37 ..................................... TCTACATTGCTGCAACCTATAAATGGATCTACTTCTA 1170215 37 100.0 35 ..................................... AGATAAAGCGTCAGCGTCCATGACTTTATTTAAGA 1170143 37 100.0 36 ..................................... TTGGAGTTATGTTAGGTTTCACTGGAGATACTGTTG 1170070 37 100.0 41 ..................................... TCTTGATAAGAATGTGCATGAAAGTGCAATAAACCAAGCTA 1169992 37 100.0 36 ..................................... GAATGTAAGAAGAAAATTCTCTACTATCTGCTTACT 1169919 37 100.0 36 ..................................... ACCATAAATATCTCCGAAGAAATATTGAGGTTCTAT 1169846 37 100.0 37 ..................................... TTTCATTATTATCATATTTAAGTCCAAAACCACTAAA 1169772 37 100.0 38 ..................................... TCTCTAAGTTCTTTAGTTTCAAATTCTAATCTTTCATC 1169697 37 100.0 41 ..................................... TTTGAACTCAACAGTGTTTAATTCAAGAAGTCCATTAGATA 1169619 37 100.0 38 ..................................... TTAGAAGTAAGTATAGCAACTACAACTTGAGCTATTTT 1169544 37 100.0 37 ..................................... TAATGCAATAAATGATGGGAATGTACTTCCATTTAGA 1169470 37 100.0 34 ..................................... TGTAAACTTGTCATCTACAAATTCTGACATAAAT 1169399 37 100.0 35 ..................................... TGAGTTTAAGTAATGCCGAACCTTACAAGTATTAT 1169327 37 100.0 37 ..................................... ATGCTAATATGGCAGTTGGAGGAGCAGGAATTGTTGG 1169253 37 100.0 36 ..................................... TTGCAGGCTGTAGTTTTGACAATAATCTTCCTTGTA 1169180 37 100.0 35 ..................................... ATTATAGTAACCACTTGTGTATTAAGGAATTCTTG 1169108 37 100.0 36 ..................................... CATTCTCCTTCTCAAATTAAAATTTTATCATTTAAA 1169035 37 100.0 34 ..................................... AAATCAGATACCATTTCTTCACATATATTTTTTA 1168964 37 100.0 40 ..................................... AATGAAACTAACTTAACTAAATTAGTTCCATATGTTGAAA 1168887 37 100.0 38 ..................................... TCAGAAGCACTTACTTTATAGACATGAAGTTCTATTTC 1168812 37 100.0 41 ..................................... TCAGAACGTCACGGCCTTTCTCCATGCATTCTACGTAGATC 1168734 37 100.0 37 ..................................... AATTTCATAATAATTTATATTGAATTCTTCTAATAAT 1168660 37 100.0 36 ..................................... ATATGGTTTAAATAATGACCATACAGTTCGTGAAAC 1168587 37 100.0 37 ..................................... TCTTCTAGCAAAATTGCCTTACCATTTGAAATTGGAT 1168513 37 100.0 39 ..................................... TCCTAAAGCTTTGGGCGACGGTATGTGGTAGGCTTTACT 1168437 37 100.0 38 ..................................... AAAAGAGTATGACTGATAGTGTCTTAACTCTTGATAGC 1168362 37 100.0 38 ..................................... TCCAAGCAAAATGGCGTAAAAAAAAAGAAAGGTGAAGG 1168287 37 100.0 37 ..................................... TTGATAGTAAACCTTCAATAGGAACATATACCCCGGA 1168213 37 100.0 37 ..................................... TTAATTCTAAATCACGTTCACATACTCTCACATTTGA 1168139 37 100.0 39 ..................................... TCTACAGAAAGTGTACATCCAAATGGAAGCGTATCTTGA 1168063 37 100.0 38 ..................................... CATCATATATTCTTTTCCTCTAAGTTTATCCATACCTA 1167988 37 100.0 39 ..................................... TCTAATCCATTTATCCAGATATTAGCTTTCTCTACGTCT 1167912 37 100.0 36 ..................................... CTAAAGTAAGTTCTACACTTACTAAAGATGCTTTAC 1167839 37 100.0 36 ..................................... TCTTTAATATTATTCTTAATGTCTTCTATTTTTGGT 1167766 37 100.0 38 ..................................... TCAAGAACAACTTCATCAGAGATTTTTTTAGTAGTATA 1167691 37 100.0 36 ..................................... TGTTGAAAAGAATCAAGTTCTTTTAAATCTATAACA 1167618 37 100.0 34 ..................................... TGTCTTTTTACTTCTATTTTATCTTTCTTTCTAA 1167547 37 100.0 36 ..................................... AGTATATCCAGACACCATAAATCATAACTGAAAACT 1167474 37 100.0 39 ..................................... TGAGGCTTTCTTATATCTGTGTATACATTAGTTACATCA 1167398 37 100.0 38 ..................................... TCCATTATTCCCATTTATAACACCACCTATATATTTAA 1167323 37 100.0 39 ..................................... TCTGTAAATAAAAACTTACCATCTCTTATATGTTTTATA 1167247 37 97.3 235 ....................................T AAAATATATTTTAAAGAAGGAGTTTAAAATGATTTCATTTGGGAAAAATATTCAAAAAAAATTAATTTAGCTTTAAATACTAGTGACTTAGCAAAATTACTTAATTATTCTAATAGAAGTTATATTGAGAAAATTGAAGATGAAAAAATGTATCTATCTACAAAAAATCAAGATATAGCAAAAGCTTTATCTTGTAATATAGAAGCTTTATTTAAACATGTAGAATTTCAAGAAG 1166975 37 67.6 0 ..GA...T.AC...ATT.......A..AA.......T | A [1166945] ========== ====== ====== ====== ===================================== =========================================================================================================================================================================================================================================== ================== 46 37 99.2 42 ATATTGAAGGTTATCCATTTATAATAAGGTTTAAAAC # Left flank : TTTCTATTTTTTCAGGTGAAAGAATAATAGATTTCTCTTTTGTTTTTACTAAAAAAGAATTTTTTTGTATGCTTATGTTTGTCCCCTCAGTTGAAATATATAAGTCCATAATACCTCCTCTTAGAATTTTAAATAAAATAAATATAGTAGATAAAATTTAAAATAAAAATATTATACTAATATATTAACATAGTATTAAGAAAATAAACATTTTTTTTACTAAAAATGACTTTACATTTTTGTAAAGTTGGTGTACAATAAATTACAAGCTAATTGCTTGTAATTTTTAGTTGCCTATGAACAATTTTTTAACATTTCATATTTTTGTTTAAATTAAAGATAAATCTGCTCATTTTTTTATAAAAAAATTAAAAAAGATAGTAGATATTTAATATAAAAAATAAAAAAAGACTAAAAAATCAAAAAAATGTTCAATTATTGCTACCTACTAAAAATTAAATTAAACAACCATAAAATCAGTATTCTTCTTTGAGTTAAGG # Right flank : CTATAAAATCCTTTGAAGAAAATAAATATCCAAAAAGAAGCCTAGCTTTTTCTTTGGATATTTGTAAAAAACATTATTTTGCACTATTTGATAAATTCATACGAGAAGATTTTATATTAAAAATTAAAAATTATTTATAGAAAACTATTATGAAAATAATGTAGAATTAGAAAAAATTGAATACTTCTTTGAAGAAAAAGAATATGAAATATGTTTAATTGGTTTATGTGATTTTTTAGAAAATATACTTAATTTAAAAGAAAAGAGAAAAAGTAAAAAATTGGAAAAAGATAAAAGTGATGAGATGCCATCACACTTGATGATTTTTTAAGAATATAGGGGGATATGTGTTCTAATTTATATATCTATAATCAAGGTTCTGTATTAGATTATGCTAATAAGACTTTAATACTTATATATGATCCTAAAAGTAATAGAAAAAAGAAATTTCTAGTGAGAATTTAGATAGAATTATTATATTTGGTGATATTCAATTAACT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATATTGAAGGTTATCCATTTATAATAAGGTTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //