Array 1 223754-222813 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAPZ01000042.1 Klebsiella pneumoniae JT4 Contig42, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    223753	    29	 100.0	    32	.............................	CCGATCGGCTTCCGTGCGCGCGGGCGAGGTAT	
    223692	    29	 100.0	    32	.............................	GCCTGGCCGAAAGTCAGCGCACGGGCAACACG	
    223631	    29	 100.0	    32	.............................	CTCGAGTAATTCCGGCATAACGCGGGCCTTGC	
    223570	    29	 100.0	    32	.............................	AAAGCAACTTCTTTTGAGGATACATTCTCTTA	
    223509	    29	 100.0	    32	.............................	GTGACAACTATATCGGCAAGGTGACGTCGTTC	
    223448	    29	 100.0	    32	.............................	CCGAAATGGATACCGCCGCGATTGAGTATTCG	
    223387	    29	 100.0	    32	.............................	TTATTATATCTTCACGGTGAGGGAATGGTCCC	
    223326	    29	 100.0	    32	.............................	CGGCGGCTGTTCATCACATCTGGGGGCTGGCG	
    223265	    29	 100.0	    32	.............................	TGATCCACGTAAGCAAGCAAAGTGATCCGCCA	
    223204	    29	  96.6	    32	.A...........................	GGCTGTCAACCAGCGCCCGGCGGACTGCTGCC	
    223143	    29	 100.0	    32	.............................	CGGCCTCCTGATGGCGGGCGCGGCGCTTCTCC	
    223082	    29	 100.0	    32	.............................	GGGTTACAGATCTCTTCGGTGAGCATGGTTGC	
    223021	    29	 100.0	    32	.............................	GCCCGGCGCGCGGCGGTGCCACGGATCCATGA	
    222960	    29	 100.0	    32	.............................	CCAGGCGACCGTATCTGGGTGCGTGAAACGTG	
    222899	    29	 100.0	    29	.............................	GGGTTCACTTGGGTGAAACTGAACTAACT   	
    222841	    29	  75.9	     0	...........ATTC...A......G..C	|                               	
==========	======	======	======	=============================	================================	==================
        16	    29	  98.3	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT
# Right flank :  GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC

# Questionable array : NO	 Score: 6.17
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [7-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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