Array 1 2083-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVBO01000032.1 Granulicatella sp. 572.rep1_STHE 330_2082_69677_292+,...,292+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2082 36 100.0 30 .................................... TCGAATGCTTTTGTTAAAGGCAAGGATGGA 2016 36 100.0 30 .................................... ACCACACTACTAATCTTGGCGGATGCAGTG 1950 36 100.0 30 .................................... TTGGAATTTATTCATTTTATTCACTCCTTG 1884 36 100.0 30 .................................... GAAGAAATCGAAAATGCTGTTGAAAACAAC 1818 36 100.0 30 .................................... AAACAGACGAAGAAGAAGCTAAAACCATTG 1752 36 100.0 30 .................................... GTTGAAAGATAAAGCGTATCAGTTAGCAAT 1686 36 100.0 30 .................................... TCTAGTATCCTTTCTACGTACCCGTCCATT 1620 36 100.0 30 .................................... GTTCCTGTTAGTCCTGTTTCCAGAACGAAG 1554 36 100.0 30 .................................... CGAGGGGTTATTAGAAATCTTGAAACAAGC 1488 36 100.0 30 .................................... AAAGAAGGATGGATTCAAGATTCAGTTGGA 1422 36 100.0 30 .................................... TCCCAATCCTTAGCTTTTACTGACACTATA 1356 36 100.0 30 .................................... TAATAACGACCGTTTAGAGTTCTTAGACGG 1290 36 100.0 30 .................................... GAATGAAAGAAACTACATGCTGTTTCTCTT 1224 36 100.0 30 .................................... CGGCTCTATGGGCTGGGAACAAATCGGTAA 1158 36 100.0 30 .................................... TAACTATTTCATCTATGGTGAAACAATGAG 1092 36 100.0 30 .................................... AAACGTCCTTCTAACATAATATGGTTCAAG 1026 36 100.0 30 .................................... AAAAGTTTAAAAATATCAAATGAAGTTTTA 960 36 100.0 30 .................................... GATGAGTCCAAATGACTTCCCAGCTTTAGA 894 36 100.0 30 .................................... GAAGAGAAGGATATTACAGATAAAGAAGAA 828 36 100.0 30 .................................... AAGCTATTTGCAAAGTCACCGATGATTACA 762 36 100.0 30 .................................... CATGTTAGACAACTTAAAACTTGGTTACGG 696 36 100.0 30 .................................... TTTACCCTGTAGCTCTTGATTGCGGGGTGG 630 36 100.0 30 .................................... ACATTTTCTTGCATAATCCATCTGTTGAAA 564 36 100.0 30 .................................... AATCGAACCTTAACATAAACGCCCTTCCAC 498 36 100.0 30 .................................... TCGAATGCTTTTGTTAAAGGCAAGGATGGA 432 36 100.0 30 .................................... ACCACACTACTAATCTTGGCGGATGCAGTG 366 36 100.0 30 .................................... TTGGAATTTATTCATTTTATTCACTCCTTG 300 36 100.0 30 .................................... GAAGAAATCGAAAATGCTGTTGAAAACAAC 234 36 100.0 30 .................................... AAACAGACGAAGAAGAAGCTAAAACCATTG 168 36 100.0 30 .................................... GTTGAAAGATAAAGCGTATCAGTTAGCAAT 102 36 100.0 30 .................................... TCTAGTATCCTTTCTACGTACCCGTCCATT 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 32 36 100.0 30 GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC # Left flank : | # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 44151-44714 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVBO01000016.1 Granulicatella sp. 572.rep1_STHE 311_44714_1172377_46+,...,292_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 44151 36 100.0 30 .................................... TCGCAATTCCTCAGGAGTTCGCTGGGAGTT 44217 36 100.0 30 .................................... TCGAATGCTTTTGTTAAAGGCAAGGATGGA 44283 36 100.0 30 .................................... ACCACACTACTAATCTTGGCGGATGCAGTG 44349 36 100.0 30 .................................... TTGGAATTTATTCATTTTATTCACTCCTTG 44415 36 100.0 30 .................................... GAAGAAATCGAAAATGCTGTTGAAAACAAC 44481 36 100.0 30 .................................... AAACAGACGAAGAAGAAGCTAAAACCATTG 44547 36 100.0 30 .................................... GTTGAAAGATAAAGCGTATCAGTTAGCAAT 44613 36 100.0 30 .................................... TCTAGTATCCTTTCTACGTACCCGTCCATT 44679 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC # Left flank : TAAAGCAGTGCAGTCTGATTTATTAGACCAGCTGAACGAGAATATCGAAATAAAAAATCAGTTAGATTTGATGCTTACGCAGATCACAAGCATTTTAGGTTCTCAATGCATAGAGAGTGAGTTGAATTTAACGTATAGTGAACTTAAGATTGAAAAAATTATTTCTGCATTAGAAGTTCGTATAGACTCGGAGTCGAATACGTTATTTGAGCAACTCTTTGAAGTACTTCAAATTTTCAAGTATCTTGTAAAGAAGAAACTACTTATCTTTATTAATGTTGCATCTTACTTTAGTGCGAAAGAATTAGATGCTATAAAAGAGTTTATTGAGTTGAATCAAATAAATGTATTATTTATTGAGCCAAGAGGTGTGTTTAACTATCCGCAGTATACTCTTGATGAAGATTTTATATTAATCAAAAATTTGTAAAAATAGTGAAAATCATTCAAATCAGTAGTCCGGCTGAGACGAGCAGCGCGATTACGAAACCTTCTGCGAG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1-2081 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVBO01000033.1 Granulicatella sp. 572.rep1_STHE 331_124641_3216914_292_,...,93+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... TCGAATGCTTTTGTTAAAGGCAAGGATGGA 67 36 100.0 30 .................................... ACCACACTACTAATCTTGGCGGATGCAGTG 133 36 100.0 30 .................................... TTGGAATTTATTCATTTTATTCACTCCTTG 199 36 100.0 30 .................................... GAAGAAATCGAAAATGCTGTTGAAAACAAC 265 36 100.0 30 .................................... AAACAGACGAAGAAGAAGCTAAAACCATTG 331 36 100.0 30 .................................... GTTGAAAGATAAAGCGTATCAGTTAGCAAT 397 36 100.0 30 .................................... TCTAGTATCCTTTCTACGTACCCGTCCATT 463 36 100.0 30 .................................... CGAGAATATAATTACTAAATAAGTAGCCAC 529 36 100.0 30 .................................... TATCGTACTCGTTCATACGCAGGTATGGTT 595 36 100.0 30 .................................... CAAGAAACAATTCATCATTGATACAAACAT 661 36 100.0 30 .................................... CCATCATGTATGAACGTGTAGATGGGCAAT 727 36 100.0 29 .................................... TTCAAAACTGTCGTGAACGGAATCATCGG 792 36 100.0 30 .................................... ATGAAGTATTTTATACCTTACCTAATGACC 858 36 100.0 30 .................................... CCCAGAAGCTGCAAGCTCTGGTGAGCAAGC 924 36 100.0 30 .................................... GGCGGAGTTGGGGTTCTTTGAAAATGATGC 990 36 100.0 30 .................................... AAGCTGCAGAACCAGTCCAGGAAGCTGCGC 1056 36 100.0 30 .................................... TGAAGCTTTAATTTTGTAATTTTTGAGTTA 1122 36 100.0 30 .................................... TTCGAAACATCCCAAGCGGATTCTTCAATG 1188 36 100.0 30 .................................... AATACTTGGTTCAAGGATGATGAAGGCTTT 1254 36 100.0 30 .................................... TCGTTGGAATAATCGCATTTATGCACTTGT 1320 36 100.0 30 .................................... GAAAAAGCTGAGGGCAAAGATGATGTATGG 1386 36 100.0 30 .................................... GTTTTTATCCTTTTATTTGACGATATAACG 1452 36 100.0 30 .................................... AGAAGGTGCTGCTATCCCAGTTGAGCAATT 1518 36 100.0 30 .................................... GAAACTTGAAATCAAAGAGTTGACCGACTC 1584 36 100.0 30 .................................... TAACTATATCATAGATTATTTAGTATCGTT 1650 36 100.0 30 .................................... TTACAAGGTAGTGAGCGATAGAGGTTATAC 1716 36 100.0 30 .................................... CATGTTTGAACAAGATTTGGATACTGGAAT 1782 36 100.0 30 .................................... TAATCCCCTCAATCACTAATGGACTTACAT 1848 36 100.0 30 .................................... AGAATCATTGAGGTTAACGTTAGAAGATGT 1914 36 100.0 30 .................................... TAAATCCTTCAGACTGTTTGGAATAGAGTC 1980 36 100.0 30 .................................... TTGGACGAGAACCTTGTAGGCTTTTGCGTT 2046 36 97.2 0 ...............................C.... | ========== ====== ====== ====== ==================================== ============================== ================== 32 36 99.9 30 GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC # Left flank : | # Right flank : CGCTTCCGTGTGACATTTGGTTGTTAAAGCTATCGTAAGCCTAAAGTTTCTGGGAATTTTATTTGATGAATACAAATATATAGATAAAAAATAACTCGGAGGAAGATTATGGGACGTAAAAGTAAGTTTTATGATGCACTAATCGAAGAAGTAGTTTATAATTCGGTGTCAGATATTTGGGAGGAAGCAGTTGAAGAGTGGGAAATTTATGATGTTAAGGAGGATGAAACTCTCGAAACATTATGTATTTGTGGACATGATCACCTTAGATATCTTTTTACAATTGAAAATAAATTGAATGGAAGAGTTTTATATCCGATTGGAAGCTCGTGTATTAAAAAGTTTGGACGCAGTGACTTAAAACATGAAGTTGAAGTGCAGATGCAATTGTTCCAATTATTACATGCTGTAGAGCAAAGAAGATTTCTAGAGTTGTCTCCAGAATACTTTAGCCGAAGACTATTTGCGTATTTATTTGAAATGGGTGCGTTTAAACCTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //