Array 1 349623-350627 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCXM01000002.1 Escherichia coli strain VREC0476, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 349623 29 100.0 32 ............................. TTATTGGGCTTGTTCGGCGCGGGTTGTTAACT 349684 29 100.0 32 ............................. TCAACCAGCCTGCTGCGCCTGCGGCACCTTGA 349745 29 96.6 32 ............................T TTTTTTACGCTCCGGGTGGCGCATATTATCGA 349806 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 349867 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 349928 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 349989 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 350050 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 350111 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 350172 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 350233 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 350294 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 350355 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 350416 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 350477 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 350538 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 350599 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 376327-377391 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCXM01000002.1 Escherichia coli strain VREC0476, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 376327 29 100.0 32 ............................. GTGCCAGCCGCGGCAACGGACGAGCCGGTCGC 376388 29 100.0 32 ............................. GCACGCTTACGCGCTCAGTTGAAGTGGGGGCG 376449 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 376510 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 376571 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 376632 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 376693 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 376754 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 376815 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 376876 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 376937 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 376998 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 377059 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 377119 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 377180 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 377241 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 377302 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 377363 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //