Array 1 111755-112648 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCHO010000001.1 Gordonibacter urolithinfaciens strain SL.1.24 EMFPNKNK_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 111755 36 100.0 29 .................................... AACCTGTTGCACTCCTGTCTCACCTCCTT 111820 36 100.0 30 .................................... CGCGCTCTTTCGCGCCAATACCATAAAACA 111886 36 100.0 30 .................................... CCCCGCCAACTGCGGGTACGTTGTGTTTGG 111952 36 100.0 30 .................................... ACGGCAGACTTGAGGATGTCCCTGCTTACT 112018 36 100.0 30 .................................... CCACGGACGTGGCGAAAGCCCTCGGGTACG 112084 36 100.0 30 .................................... ACTATCGCCCTCGCCATGTGCCCCTCGCCA 112150 36 100.0 30 .................................... GGTACACCCAGTTGCAGGTAGGGTACTGGT 112216 36 100.0 30 .................................... GAAGCGTGTAAAGGCTGCTATCAATGTCCT 112282 36 100.0 30 .................................... TTGCATTTGGAATATTTTGAGACAACCATT 112348 36 100.0 30 .................................... GCGCCGCATCATCAAGCTCGAAGAGAGCAG 112414 36 97.2 30 ..............G..................... CGCCACGCTCACGTACTTCCACGGATGGTC 112480 36 94.4 31 .......G......G..................... GGAAGTGGCGAGCTCGGAAGATGAACGCAGC 112547 36 91.7 30 ..............G.............G....G.. AAACGGCTGATACGCTCGTTGCATGCGCTG 112613 36 80.6 0 .......T..G.....G...C.....T..A....G. | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 97.4 30 GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Left flank : ACTTATCGGCGAAGTGCTTCAGCGTGTGGAGGGCATGTTTCTCTCTGAGGATGATGTGCGTCAGGAGATTGAGACGGCGGGACGAACACTATCCGAGCGGGTTGCCGCTTTGGGGTTGCGGCTTCAATCGGACTATGCTTTTGACGTACAATGGGAGATGCGGAAGTATCTGAAAGCTTTTGATTTCAGCGTTGATGTCGATTCTTCCGACACGCTCCTTGACAACCTGATAAAGTTCTTGAAGTTTGCATCCGACGCGTCGTTTAAAAAGCAGTTGGTTTTCGTGAATTTGAAGAATTTTTTGGAGACGGAAGAGGTTCAAGAGTTCTATCGGCAAGCGATTTTTTCAGAATTGAACGTTCTGCTGCTGGAGAACGTACCTGATGGAGCGAGCTTTGAGTTCGAGAGAAAAATGTGCATTGATAAGGACTTTCTTCAATCATGAAGAAGCCCGCCAGTCGGCTTGTCCATCCTCCTGCAGAGAGGATTTTGCCCCAACG # Right flank : CTAATCTTGGGCGCGTAGCCTTCGGTAGCCGTTTGGAGCGGTGGCTGGCGGACTGGTGGACATAAACGAATAGGATGACCAACCGGAGGGCATCGCTTTAAGATACAGGGGTGGGAGGGTGTGAGGTTGGATGCGTCTTCCGTCGTCGGTTAACAATTGCCGGTGGTTTTCAGGGCGATTGCCTGTACCATAATAGGGATAGATAGTTTATACTCGCACGTAGGGATTGCAAGCGGACCTGTTGCGAGGAGGAACCATGGCCGTCAACCGTCAGAAGCTCAAGCTGCTGTATCTCATGCGGATGCTCGAGGAGGAGACCGATGCCGAGCAGGGGCTCACGATGGCGCAGATCCTCGAGCGGCTGGAGGCACAGGGCATCACGGCCGAGCGCAAAGGCATCTACCGCGACATCGAGGCGCTGCGCGAGTTCGGCTTGGACGTGCGCACCTACCAGCGCGCGCCGGTGGAGTACGCGCTGGAGCGGCGCGACTTCGCTTTCC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 127555-128651 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCHO010000005.1 Gordonibacter urolithinfaciens strain SL.1.24 EMFPNKNK_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 127555 32 100.0 36 ................................ ATCGACGAATGCACGGCCGACGCCAAGAAGGCCGTG 127623 32 100.0 33 ................................ ACGGCTGTTCCGTCTGCTATGAGCAGCGTTGGA 127688 32 100.0 34 ................................ CGGCCACGACCTTGCCGGTGGCGTCTACGACGGT 127754 32 100.0 37 ................................ AAGATGCCTCCAGAAATCATCAGGAGCGGAGGAACCG 127823 32 100.0 35 ................................ ATCATGCCGTCCCACGTGTACCCCATGTCTACGCA 127890 32 100.0 33 ................................ CTGCTCGAATACCTATTGGCCCACATCCCCGTC 127955 32 100.0 37 ................................ CTGGAAGCCGGACACCTCGCCACGGCGGAACCCCGTG 128024 32 100.0 35 ................................ TCGCAGCAGGGCGGGGGAGTGAGGTGCATGCGCTC 128091 32 100.0 35 ................................ GGCGTAGTCTGCGAAGCCTTGGCGTGACCGTAGAG 128158 32 100.0 34 ................................ GAGTTTGGACGCATTGACGCTCCCGTTGGCGAGC 128224 32 100.0 33 ................................ GAGTTCCAAGCCGGTTATATCAAGCTGTCCGAC 128289 32 96.9 34 .......................A........ GACTGGGAATCGGACGCGCCGCGCATACAGGCGT 128355 32 93.8 34 ...................T...A........ GCGCTGGCTGGCGAGCCGGCGTGGGTCCTCTGCG 128421 32 100.0 33 ................................ CAACGACTACCACGGCCCGTACGTAACCGACAC 128486 32 100.0 36 ................................ TGCGAGCCGCCCAAGGCCCCGGGGCAGCTGGTCGCC 128554 32 100.0 34 ................................ CGCTGAAGGTCGCCTCGGGAAGCGGTTCGTCGTT 128620 32 90.6 0 ...........C.........C........T. | ========== ====== ====== ====== ================================ ===================================== ================== 17 32 98.9 35 GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAC # Left flank : GGTCCCTGCATCGGCTCGGTCGGGCTCATCCCTGACCCGCAGCGGCGCAACGTCGATGCCCTCATGTTGGGGTACTCCCTGGCGAAGCCCGCCTGGGGCCGGGGCTACATGACGGAGGCGTCGCGCGAGGTTATCCGCTACGGTTTCGAGGAGCTGGCCCTCGGCCTGATCTCCTGCACGCATTACCTGTTCAACGATCGCTCTCGACGCGTTATCGAGAAGTGCGGCTTCGAACGCGAGGGCATCATCCACGCCGCCGAGCCCGCCCCCGACGGCACCATGCAGGACCTGGAGACGTACTATCTGACGCGCGTGTCATGGGAGGAGGCCTCGCGCGAGAGCGCGCCGCTCTGCGCGAACCCGAAGCTCTGGCAGTCCACTCAAGAGGTTCGCGCAGAATGACACGTCCAGAGGGGTAGCTTGCTGGTTGCGCAAGGTGCTACGCATCTTGAAAAATGAATACTATAAGTGAAAAATGCACTATCCTGCATAAACTGCCA # Right flank : CATTCGAATCGTGCTCGCTAAATGGACGGCTAAACAACCCGAGAGGCATCCTCGTGCGAACTGGGTTGACGCCTCGCTCGCCGGTTCTTGGGCCGCATTGTCCCAGCTTGCCGCACTACCCGGCAGGCTCGCCTGTCTTGCCCGGCTTCCCCGGCTCGTCCGATCCCGCTGTTGCGTGCGTCTCGTTCGCCCCATACTTCTTTATCGTGCTCGCCATCATGTCAGAAGGGCGATACAGGAACGTGAAGCACTTCGGGCAGCTCACGGCGTTGTCGGGCACCGGCTCGCCGCATTCGGGGCAGCGGCCGTCGTCGATGCGCTCGCCGCTTCCGTCGGCCATGCATGCGCCGCACATCACGCAGGGGATGCACATGGGAAGCCTCCTTCCGCTTGCGGTTTCGCTATCTCCCCCGGCATGCCACCGATCTCGCTCGCGGCCTTCTCGACCTCCTGCCGTATGAGCGCGGCCAGGGAGTCATGCACCACGTTCTCGAAGGGGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.30,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 133291-133798 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCHO010000005.1 Gordonibacter urolithinfaciens strain SL.1.24 EMFPNKNK_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 133291 33 100.0 35 ................................. TCTCGCGGGTGTGGAATCAGGTTGCAGAAGAGACC 133359 33 100.0 36 ................................. CACACTTCCGTGTACGGCACGACGCGCTCCATCAGC 133428 33 100.0 34 ................................. GGGTACTCGGCGATGACCCTCTCGTGCGTTCGCT 133495 33 100.0 35 ................................. TCCAAGAGGCGCGGCCTCCAACGGGAGGGGAGCGG 133563 33 100.0 33 ................................. TCGAGCACGCCCAAACGAGCGATTGAAGCCATA 133629 33 100.0 35 ................................. AAGGTCTCAAAAAGGCTCACACGAGCTCTTCTAAC 133697 33 100.0 37 ................................. TGCCCTTAGTCCAGCAGCTCGGGTCGCTCATGCAGGG 133767 32 84.8 0 ..........-ATA..................T | ========== ====== ====== ====== ================================= ===================================== ================== 8 33 98.1 35 GTCGCGCCCCTCGCGGGGCGCGTGGGTTGAAAC # Left flank : GATTGGCGGCCGTGCCCGGCCGTCGCAGCCCGATCCCGCTCCTTTCCGCAAACGAGGCCCGCCTTCATGTTGACCGCCCGCCTGCCGCCGCCTGCGAGCGCAAACCTTCGGAAACGCCGTGGAAGTGCAACTAGGAAGTGATGTTGAGTGCAGTATGGCCGGCGCGGCGCGGTGGCGCCATGTCCAAAAGGGCGCAGGGGGATAGGATTGGGAATTCCGTGCTGATAGGGTAAGCGGTGGGCAGGAGAGGCTTCCTTTTGGGTGATGCGAACTCGTACGTTCTTGCTTGTTCTATAATGAGCTTGAGTGAATTCGAGGTTGACGATGAGTCTGGGTGCCCTCGATCCGCTAGTGCGCGAACCCTAAGCTATGGGGATTCACACGTGAGGTTCGCGCATGAATCGAGTCATTTCGGGTCGATGGTTGCTAGGAGGGTTCTGAGGCAGCTTGAAAATTGCATATTTCATTCAATTTTATTCAGAATTATGCATGAATTGACA # Right flank : TGCCGCCGCGCTAGCTTCCGATAAAACGAGTGATAGGCCTCGGCCTCTGCGAAGCTACCTGATTTGTCACTGCTGCAGTTGCGAAAGGGGTGTGAATTGGGTGCGCACCGTCGCCGTATCGTGCTCTTAGCACCGGTTTCGACAGACATTTGCGCCCCCATGCTACAATGCGCTCATGATGCGCGAGAGCGACATATACGAGCTGCGGCTGTTCGATCGGATCCTGATCGTCTTTCGCATGTCGCGCGGCGAGTACGGCGATCTTTCAGTTGAGGTTGTCTCGGCAGACTCGTCGGCAAGCCGCCTTCTCCCGCTGTCGTTCGATGGAGAGACTACCGACGAGCGTCTCTTCGAATGGATTCGCCGACGGCGCATCCCGAAGAATCGCGCCTATGTTGACGAGATACTCAAGTCGTGCGGCATCGAGTCCGACGATGCGAAATCGATCATCGATGTGAGTAAGGGCCTTTCGCTCAACGATTCCTATTGGGTTGTTCCTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCTCGCGGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.50,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 143262-143951 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCHO010000005.1 Gordonibacter urolithinfaciens strain SL.1.24 EMFPNKNK_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 143262 31 100.0 34 ............................... GATACGCTTGCCGACGCAGCCGAGGCTCGCCGCG 143327 31 100.0 34 ............................... AAGACGGCATCCAAGGGCGACCCTGGAGAAATCT 143392 31 100.0 34 ............................... CGCTGAACTGCGCCAGATCGAGCGTGCATTAAAG 143457 31 100.0 36 ............................... TACAACGTGACGGCGGAGCGCCCGAGCGACGAGAAC 143524 31 100.0 34 ............................... GCTACGAAGCAGCAAGCGAGGGCCTTAAAGACCT 143589 31 100.0 33 ............................... AAGGATCGGCCCAGAAAATAGCGGAGTGCATCA 143653 31 100.0 37 ............................... CAGGGTGATGAGCTGCGTGACGCCCTGGTTCAGGCTC 143721 31 100.0 36 ............................... TGGAAACAATCTAATCAAGGTTGGGAGGAGAAAATG 143788 31 100.0 36 ............................... GTCGATTCGGACGGTGAGGCCGTTGAGGGCACCATG 143855 30 77.4 35 ......T....-A....G.AT..A....... GAGACATCTTATATTTGCGTGGAGCTGGACGAGAA 143920 31 77.4 0 ....C.....TATT........C...A.... | C [143926] ========== ====== ====== ====== =============================== ===================================== ================== 11 31 95.9 35 GTCGAGCCCTCGCGGGCTCGCGGGTTGAAAC # Left flank : GTTCATTTGGAGGTAGCGATGTACGTGCTGGTGACATACGATGTGGAAACGGCGAGCCCGCAGGGAACCTGCCGGTTGCGTCGGGTTGCGAAGATCTGCGTGAAGTACGGCCAGCGCGTGCAGAACTCGGTGTTCGAGTGCTCGCTCGATCCGGCGCAGTTCGAGACAATGAAGAGCGAGCTGATGAAGGCGGCCGACCTGACGCGTGACAGCCTACGGTTCTACAATCTCGGGAAGAACTGGAAGCGGAAAGTCGAGCATGTGGGGGCGAAGGAGGCTTACGACCCGGAAGGGTTCCTGTGCGTGTGAGAGGAAATGCGCACCTTGACAATGTAGAAGCTCTATTGCGTGCTGCGCGAACCCCAAGCGATGGCGCGCCATTCGGGAGGTTCGCGCAGGTTTTAGGCTTCACAAGCCCGCTGATAGCTGTTCATGGGGCAGACTGATTGTCTAATATGAATATAATAATCAGAATATGCGTATATATGCATATTCTGACA # Right flank : CGAGCACTCCCGCAGCGATTTCTTGCAGAGCTGGTTGATCATGGCGGGCTCCTAAGTGAAAACGGCGCCGCATGCGTCGATGGACTGGACGGGTTATTTCCCTCCTAAAACGATGCGGCTGTCGAGGCGCGCCCGCCCGACTCCGCGCACATGCTATGCCGCACCCCTCGACGGGCGGTAGCGGTGAGCGGCGAGCCGGCTGGTGCGGTCCCGGCTACCTGCAAGGAGGCTCGACGAAGGTTGGAGCTTGCGGCGATCTCCAAGCAGTTGGTCTATAATTCTCGTTCGTAGAAAAACGGGAGAAGGGGATCCATGGCGTCGGAGAAGCAGCAGGCAGGGCGCGCCTTAAGGCGGTTGGCGCGGAAGAACCCGCTTGCCGCCCTCGCCATTGCGGCCGTGCTCGTGATCGGTGCCGCGCTTGGATGGTTCGGCGCTGCGGGCGGCGGGGTCGCGGAGGATGCCGCGCCGGGCCGAGACGGCCAAGCAACTATCGCCCCCGT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGCCCTCGCGGGCTCGCGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.70,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //