Array 1 10011-11017 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUBC01000039.1 Pseudomonas pachastrellae strain CCUG 46540 contig00039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 10011 36 100.0 35 .................................... ATCAATTGCATGATTTTTTCCTTAGTGGGTCGCCA 10082 36 100.0 32 .................................... CAGCGCCCAGTATTGGACATCATAAGTTTTCA 10150 36 100.0 34 .................................... GTCCAGCGCCAGCCCAGCACGCTGAACAGGATTT 10220 36 100.0 33 .................................... TGGGGGTTTATAGGGATTTCTAGGGATTTTCCG 10289 36 100.0 33 .................................... GCATGAATACCCGCCCATGAGGTTACCTGCGCA 10358 36 100.0 34 .................................... CCAGAACCCATGACCGGCTCCCACATAATATGGG 10428 36 100.0 33 .................................... TCTGCAAAGGTTTGCAGTTCGATCTTACGTTCA 10497 36 100.0 34 .................................... GTCGCTTTCAGCTGCGAGGAACTGACCGCACAGA 10567 36 100.0 34 .................................... TTCGAGGCGATTGATTTCATTCATCATTTCTTCA 10637 36 100.0 33 .................................... ACCTCGCGTTCGAGGCGGTCGATCTCTTTCATC 10706 36 100.0 33 .................................... TTGTCTACGTCTTGCCACAAGCTACCGCCAGAC 10775 36 97.2 35 ...........A........................ TTACGATTGATTGTGTCTACGGCGTCAATCATGCA 10846 36 97.2 33 ...........A........................ ACGGTATAACCTACGTTCAGCCAGAACTCGGAC 10915 36 100.0 31 .................................... TCATTAGTTGCTGCAGCTGCAAATGCGTTTT 10982 36 94.4 0 ......................C............T | ========== ====== ====== ====== ==================================== =================================== ================== 15 36 99.3 33 GTCCAAGGCCTGCCCCGCTTTGTAGGGGATTGAGAC # Left flank : GCAATGAGCAAACTTTGCCAAGGACTAAACCACCTCGACCGTATAACGGCCCGCCTGATCTACGAACAGCGACTGGCTGAGAATCGGCCTGCGACACGTGACGCCAAAACTCGCGCAGTCGTGCCGAGTCGGTGGATAGCGAGTGGCTGGACAATCTGGATCCCGAGTGTCTGGAGTCGTTGATGGGTGGCCCGGACGACAGCTGCCTGGAAAGCGGTTACTGAGCAAACCGCTACAACCAGCGCCTGCCAAACGATATAACAGACCTGCCGATACCGCAGTGGCCGCCTGATTCAGCGCGTTCGGTTACGACCCCAGACTGTAGGGTGAAGCCCGACAACGCGCCGAAACTTAGTCGTATTCCGGTATGATTGGCCAAGCGACTGGGACAATTTCACGCTGGAGATAGATCAAATTTTAATCAACTTTTTGATCAAAAAACGATCAGCATTTTACCATATGCAAGCTGCTGATTTACTTGCAAAAAAAATCGCGTTAGA # Right flank : TGCCAGCCAGCGCAGCAGGTCCCTGTCCCGCATCATGGCTCGGGACCTCTGGCAGCCTCAAAGCTCGTCAACCCGGTAGTAAGGACCCACCGCCCCGACCGCTCGCTCGCCACCACATCGAAACCTGCACGCCATGCCACATTGCAAACGCTACCGTAAATTCCGCCCAGTCAACGCCGCAACCGGCCTCTGCCAGACGTGCTCGTATTTCATCAGCCAGCCGCAGACAGCAAACCCCACAGCGAGGGATGCGGAAAACACCCGACAGGATCAACACGTAGTGCCGTCACAACCACCGACTGGCTCCGCGAAAGTACTGCAAACGCGCCAAGGCGCTGAGCTGCTGGCCGCGTCTCGCCAGCTTGCTGGCATGAGAACGGCCCTGAGGAAGAGGGAAAAGGAACTCGCGCAGAGGGAGGAAACCGAAAAAGCACTGCGCCGTGAAAACCTCGAGTTAACACGCCGCCTGAACGCCGCGCAGAAGCAAAATCAATCACTAC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAAGGCCTGCCCCGCTTTGTAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 16966-17355 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUBC01000039.1 Pseudomonas pachastrellae strain CCUG 46540 contig00039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 16966 36 100.0 33 .................................... CAACCCAACGATCGGTATTGAAACAGCGACTCA 17035 36 100.0 31 .................................... AGGCTGGCTGCCAGCTGCGGTACGCGGTGAG 17102 36 100.0 33 .................................... AGAGCCATCAGGCTGTGCATTGTCTCCTCCGGC 17171 36 100.0 33 .................................... CTCATGGGAGCGAAGAAGTCCTCGTCCTGCATG 17240 36 97.2 43 ..........................A......... ATGTACAGATTGATGAACGCCTGTGCCTTCCAGTTGTCGTTGG 17319 36 91.7 0 .....................CC............A | A [17345] ========== ====== ====== ====== ==================================== =========================================== ================== 6 36 98.1 35 GTCGAAGGCCTGCCCCGCTTTGTAGGGGATTGAGAC # Left flank : CAGCAAGAAGGACCTGAATCCGTCCTATCGTTTCCGGCTAAGCCCGGACCAATTCGTGATCAACGACATCTGACGGCACACGCTGCAACGGGGCAAGCGCATGGCACGCATTCTGATCGGCTACGACATCCACCAAAACGCTCGTCGACGTCGCGTGCTCAGACTGCTGCGAGCGCTAACGCCCTGCTATCAAAAATCTTTTTTCGATTGTGAGATTCCAACCAGTCAACTGCCGGCCCTGTTTGCTCAACTAACCGCACTGATGGATCCACATGAGGACGGTCTTATCATTGCCAGCCTGTACCCAGGCCACGAAACATCACTGGGGCAACGCTGGACTCACGGTGGCGACAGTCTGTTTTTGGTGAACTGATGATTCTTCAAAGGCGTAAATATAGCGACAAAGCAGATCAAATTTTAATCAACTTTTTGATCAAAAAACGATCAGCATTTTACGGGGTTCAAGCGCTTGATTTACTTGCAAAAAAAATAGCGTTAGA # Right flank : GTCCGACCCTCACGCTGCTGGCGGCGTGATAGGACAAAGGCTGTTCCTCGTGAAAAAAAACGATGGGCAACCGCCTGTAATTGCGGCAGCTCAAATGCCTACCGCCTGTCAGTAGCTACCTTCCTGAAGCCTTAAAGGCAGACGCCTTGCTACAGCCCACTATGCCCCGTACGCATGAAGATTCAGACAAGTTATTGCCCCTGCAGTCGAAGAGTAGCTCGCTGGGCGATAACAACGCGCACCCTATCTTCCCATTCCGACCCGGTATCGGGGTGTCTATGAGGACAGGTCAGCACCTGTGAAAAGGGGCGATGTGAAACCAGCGCTGTCATCTGTTCAGAAAGCCTGGCGTCGCGCCGGCGGCTGGTGGATTGCCATACTGGAAAGGTTAAACCTTCGCGGTTGATAACAAGCCTCACATGCCATACGAACCGCTCGTTACCTCAACCGCTGGCGCGAATCTCAAACGCCTGAAGGCTTGCGCCCATCTGACGCAGCTG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAGGCCTGCCCCGCTTTGTAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //