Array 1 123395-123098 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSGX01000012.1 Hungatella hathewayi strain AM39-16AC AM39-16AC.Scaf12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 123394 30 100.0 38 .............................. AATGTCTGTGATCTCGATGATATCGAGAACCCTCCGCC 123326 30 100.0 38 .............................. AATATGTTTAGCAGAAGGTTACGAGATAGGGCTGGCAT 123258 30 96.7 37 .................C............ AATATGAAACTCCCTTTTCCAGTCAGCGCCGCAAGGA 123191 30 80.0 33 .................C...T..A.A.AG TTGGGAAAAGATACTTTCCTTTGCACCCCCTCT 123128 30 83.3 0 .....C...........CA.....T.A... | C [123100] ========== ====== ====== ====== ============================== ====================================== ================== 5 30 92.0 37 GTCTCTGCTAGCGATAGTGGAGTGGATTGA # Left flank : TCTTTATTGATTGAAGAAATAAACAAAAAGATTTCAACAAAAGAAAAATTTATTTGCGTAAGCAGATCCCGAAGATTTGGGAAAACTATGGCGTTGGAAATGCTGGCTTCTTATTATATAAAAGAGGGGGACTGCGGACTCTTTATTCAATAATCTTAATTAAAGAATTTCACACAAATATAGAACATTTAAATTGCCATAATATAATCTATATTAATTTTACTGATTAGTTTGAGGTTATATTATCTGGTCAACAAACATGATACGAAGGTGGAACATTTTGGTGCCTATGAAGGGTAAATGTAGAAAAACCTCTCATTTTCTAGCCTGTGAATTATGGTGCGAACCAGAAGTGATCATAAAATCCCTGGGAGGTTCGCACCGAGAATTTCGCGGTTATGGAGGGAAGATAGGAGAATTGGATGAATTGAGTTAATGAAATATATGCAAAATACCCATGATTATTACTGGTTATATGGTATAATATGTGTGAATTTGCA # Right flank : TTATTACAAAAATAAACCGTTGAGGGAGTCTCTGCCAGCATTAGAAGCTTATATTAAATTTATGAAAAAATAATTCACAGACGTTAAAAATAAAAAGACAGAGGAGACAAGGATTGAAATACATTTTTATACATGGACTTGGACAGGGGCCGGATAGTTGGAATAAAACGGTTTCCTGCATGAGAGAACAGGAAGAGATTCAATGCCTGAACGTATTTGCTTTAAAAGATGGGGAAGAGATTTCGTATAGCAGAGTATATGAGGATTTTTCGGCGTACTGTGAGTCTGTAAAAACGGAGTTTGGGCTTTGTGGTCTTTCTTTGGGCGCTGTGATTGCATTAAATTATGTGGTGGAGCATCCGGGAAAGGTAACGTCGCTGGTTTTGATTGGGGGACAGTACGTGATGCCGAAGGGGCTTTTAAGACTGCAGAATATGATATTTCGGGTGATGCCGAATGGGATTTTTAAGAAAATGGGGTTAGGTAAGAGAGAACTGATT # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTGCTAGCGATAGTGGAGTGGATTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 191054-191287 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSGX01000002.1 Hungatella hathewayi strain AM39-16AC AM39-16AC.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 191054 33 100.0 34 ................................. ATGGAAATTATCAAACTACTTGTCGTTATCCACA 191121 33 100.0 35 ................................. GGTGATATTTGCAGGCAGCTGCGGGAAGAGGAAAC 191189 33 100.0 33 ................................. GGTAAACCGATTGGAGTAGTAAAATCAAAAGTT 191255 33 90.9 0 ....T..................A........C | ========== ====== ====== ====== ================================= =================================== ================== 4 33 97.7 34 GAGTCATCTCCTGCGGGAGATGTGGATTGAAAT # Left flank : TACAGTGTCTTTTTATGACAAGGAGTATAAAAAAGCACTGAACATCTGCGGAACACGGTCCGGGCGTGACTGCGATAAGGCGGCGGAAGCCGGGCTGACCCCTTATTTTATTGATGGTACTACGGCCTTTGAAGAAGCAAATATGATTTTTGTCTGCCGGAAGCTATACTGTGATCCAATGCCCGGTGATAATTTCCTGGATAAGGAAAATGATGAGAAATGGTATCCGGATAAAGATTATCATACAATGTACATTTCGGAGATTGTGAAGGTGCTTGTGAAAGACTGAGAAGAAAATTAGCTGTGAGGAGTGGCTGCACGGGGCGGTAGCTGGTGCGAACCTTAAGTGAACATAGAATTACTGGGAGGTTCGCACTGGAAATTGGGGGGGGGGGAAAATTGGGGGAATATGGAGTTGATGATTGATTTTTTAAGGGATTGTTGTACAATGTAGTTAAGGATGTGAGGGGAGTTGGGGAGGGAGATTGGGGAAAATTGCT # Right flank : CCATATGGAAAATCATACTAATGTCAACCAATCTGTAAAAAAAAACGTCCCACAACCATTTTGATCTCCACAAAAAAGGACCTTCAGATCACCATATCCGAAGGTCCTTTTTTTATCCAATTTCCTTTTTCTACCTAATCACCAAGATAATAAAATGCTGTAAAATACCCTTTCTCATTATAGTAAAGATCATTACCGTATACGGTATATTCAGCCGAAGCCTCCTCTTTGCCTTCTTCAACCGGTTCTCCGGCATATAGTTCCTTTTGAGTTTTTGATGCTTCCGCAAGGTTGGTATAGGTGCCTGTGACGGCGCCTTTGAGGATATAAATATCGCCCTCATAGACCGTTTTCATAATCGTATCGTCACTGTCCTCCCACAGGGTATACGTTCCGTTCTCTAAATCCGCGGTGATCGCCGCCTCATTGCCGTAAGTGGAGGGATCCATACCTTTGTCATACGTCAAATAGCCGTTTGAACCGCTGGGCCCGGCGTTGGG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTCATCTCCTGCGGGAGATGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 269397-269633 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSGX01000002.1 Hungatella hathewayi strain AM39-16AC AM39-16AC.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 269397 33 100.0 35 ................................. GTCGAGATGATGGATGATGTTGATTTTCGGACAGC 269465 33 100.0 35 ................................. TTGAGATCGAACCGCAAAGGGCAAAACCTGAGAAA 269533 33 100.0 35 ................................. TAAATCCTAACAATCACGATTATAAAAAGTTTCTT 269601 33 93.9 0 ......................A.....A.... | ========== ====== ====== ====== ================================= =================================== ================== 4 33 98.5 35 GTCGCCTTCCGCAAGGAAGGTGTGGATTGAAAT # Left flank : TGCTGATTACATATGATGTAAATACAGAGACTGCCGCAGGCAGAAGCCGCTTACGCCGAGTCGCAAAGCAGTGTGTTAATTATGGCCAGCGTGTTCAGAACTCGGTCTTTGAAAGCAATATGGATGCGGCAAAATGCAGAGCTGTAAAGGGAATTTTAGAAGGAATTATTGATAAGAATGTGGATAGCCTCAGATTTTACTACCTTAGTGATAATTATAAGCACAAGGTGGAACATATTGGTGCGAAACCAGGATTTGATGTGACAGAACCATTAATTTTTTAGGGCAGTTGTTCTTTAAATAAATAGTTAGATAATTCTTTTGTATTAAAGTGCGAATGTCAAGTGAACATTAAAATAACGGGAGATTCGCACCTGTATTTTAGATGTAGATATACCGAAATATGTAATATAGTTTGATAAAATGATTGAATAAGTCAAAATGATAGAGTTCTGTTGCTGATGAGGAGAAATTCACTTGTAATTTGACTTGTATTTGCT # Right flank : TATTAACGTATTTCTCGAGGCATTTTACATCTCCTTCACTCCATATTCCCTGTTGACAACGAACCTCCTTGTCTCAGGGAATCTAATAGGTGCCTAAATGTTGAGAAAGGCGTTTAAAACAGCTGTCTGGAGCAATCGCTTACATGATACCCCACTCATTCTCAACAAGTTTTCCCTGTATACACGGAGAGTTTTCCTGTATAACCTGTTAAAAATCTTTCAAAAATCTATTACTCATCGGTATGCAGTATTGTATTTATAATTGGCGTTATATCATTTCCTTTCTTTAAACAGCTGCAATAATACCATATTACCATACACAGCCTGTGCCTGCTTCTGCACTGCTGCCTCTCCCCTCATCAGAAAAAAACAATTATTTAACACAGAACGGCAAAGGTTCCCGAATTACTGAACCTTTGCCGTTTTAATGTCAGAAATAAACCTCATATCCTTTCAAAAAGCACCATAATATGGTAAAATATTCCGATAATCACGCCCGG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTTCCGCAAGGAAGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //