Array 1 233-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAUB01000029.1 Synechococcus sp. NKBG15041c, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 232 37 100.0 41 ..................................... ACGATTAATATCAAACAATTGAGAAGCATCTACAGTGCCTG 154 37 100.0 41 ..................................... TCAAAAGACGAGAATCACCCTTCATATCTTTTGGAGTGTAA 76 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 3 37 100.0 42 GCTCAACAGCCTAAAAACCCCGCCAGGGGACGGAAAC # Left flank : CTAGTCCAGCTTTTAGAACAGCGTTGTCTACGGGTGCAATATTCTGTTTTTGAATGTCCTTTGGATGAGAAAACTCTGCGCCGTCTTCTCCAGGAGCGTTGGTTGCCTGTGTTGAATCTCAAGCAGGACAGTCTACGGATTTATCCCCTTGATAAAAATGCGGTGCGCCGTACTCTGGTTTATGGCAGCCCGCCTCCCTATGAGCCGCCAGATTATGTGATTTTGTAGGGAAAAATGAAGGTTACGAAACATTAAGGCGAGGGAAGGCTTTGTCGCTATGACTGTAGCAGAGTAAGAAGAAGGATTTGTAAATGAGGGTTAACTTATTGGGTTATGGTCGGCTGATTTGTAGTTTTTTTGATAAAATCTGGTTTATTAAGAGTTTTCAGACTTTTTTACGGCAGTGAATTTATTTTATGGAAAAAATCAGAGCCATTTTTTGCTTCCTGTCGGAAATGCACCTCGAAAACCGCATAAAATAAAGTTTCCAAATGACTAGG # Right flank : CTCCATAATCACCTCCTCATAGAATTCTGGAGGCAACGTT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCAACAGCCTAAAAACCCCGCCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 45-298 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAUB01000027.1 Synechococcus sp. NKBG15041c, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 45 37 100.0 36 ..................................... CTTTCGATCAACTCATCAAAAGCCTCCCCTATCGTC 118 37 100.0 35 ..................................... TAAATCCAGATTGTTTAAATGTTGAAAAATTACTT 190 37 100.0 35 ..................................... TCGTTCCATGCGCCAACTAAACCAGGCGTTGCTTG 262 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 100.0 39 GTTTCAGTCCCGTAGTCGGGATTTAGTGGTTGGAAAG # Left flank : GGAAAGTTAAACGCTCGACGCCGCCGTCGAGAATGCTGTGATTGG # Right flank : GTCCGCGAGCCAGGACTCTTACGACACCTAGCTTTGCAAAGCTCATTTGGCGGATGTCGTTCCATGCATCTCATGTTATCCATGATAGCCCTACAAGTTGTTGACCTTTCAGCATTAAAAAGTATCGAGTTTTCAAGGTTCTGAAGGTTTTGGCAAAGTCCCTAGGGTTTTTGGTCACGCTATGGGTTTGCCAATTTGATTTTAGGTCAAATCTAAATAATGATACTACCCGGTTTTTCTGGCGTAGATGTACCGTAGGCGATCGCCTTTTTGATGGCAGTGGCATCGAGAATATAAATACAGACAGCATCTTCATCTGGTTTGATGAGTTTTTCTATGGTGGTTTGTAGTTGAGCAAATTGTTTGGCAGTGAGAAAACATTCAAAGACGCTGAATTGTTTCCATTTCCCGTAGCCTGAGAGTAGTTCAAATAATCGTTTTCGGCGTTTGTCACCAGATTTTGTCGAAGGTAGGTCATAGATAACGAGATAAAGAAGGGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGTAGTCGGGATTTAGTGGTTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 22429-22162 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAUB01000027.1 Synechococcus sp. NKBG15041c, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 22428 37 100.0 39 ..................................... ATAGGTAAGCCCCCCTACCTCCAGTCGATTTGTACAAAA 22352 37 100.0 40 ..................................... CAATATAGCTCCTGCAATAGAGTACGAATCTGCTAGATTC 22275 37 100.0 40 ..................................... AGTGGCGGCACTGGCTAAGTCGTAGGCTTCGAGAGCCAAG 22198 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 100.0 40 GCTCAACAGCCTAAAAACCCCGCCAGGGGACGGAAAC # Left flank : ACTCTTGA # Right flank : CCGATTCATGGATATTGCGAAGTCGCTGGCTAATTGTTGCTCAACAGCCAGTAAAATATAAAGTTTCAAAAAAAGAAAAATCCCAGTCGCGGGTCTGGTGCGCGAACACCAAAAACCCCACTGGGCGTAACCTGAACAAGAGGTCACCATGAATATTTTACGCTACGAAGAAAACGACATCGAATTTTTCACCATCCAGGCAACTGGGGAATCAGGCATGAGCCAATCCGGTTTAGCCCGCCTCTGCGGTGTTAGTCGGCAAGCAGTTAATCAACTCGTCAATTCAGTGTCAACGAGTTCTTGTCCAGAATTTCTGAAACCTTTACAGAACAGGAGTTTAACCCTGTCAAGCAGTTATGATGAGTTTAAAAATGCCCAGGTACTGAAAGACTTTGTTTGTGCCCGCATTTTGGAATGGTACGCCTTCGAGTCCCAACGACCAACGAAAGAAGCCCAACAAGCATTTCGGAAATTTGCCACCCTAGGGATTCGCACCTGGA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCAACAGCCTAAAAACCCCGCCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 413-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAUB01000023.1 Synechococcus sp. NKBG15041c, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 412 37 100.0 38 ..................................... CGGAAGGAATGTCAAGGGAGGACTGCCCCTCACCAAAA 337 37 100.0 36 ..................................... AAAAACGTGCAACTTTAATCGCCACCTGGAAATCTG 264 37 100.0 35 ..................................... GGTTATCAAATTGAGAACGATGCACCAAAACAGGG 192 37 100.0 36 ..................................... AATAAACCCGTTGGGGGGCGTGGCAAGAAAGCCCCC 119 37 100.0 38 ..................................... TGGCCTGGAGCTGGCAAATTATTTGCAGCCGAATCAAG 44 37 97.3 0 T.................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 99.5 37 GTTTCAGTCCCGTAGTCGGGATTTAGTGGTTGGAAAG # Left flank : TGCTTGGGTATCATCGAGGAGTAGGGCGACAAAGGGAATATGGTGTAGACCCAGGTGGGGAATGATAGTCAATTCTTTAATGCCTTTTAGGTGTTCTTGAATTAACTGCTCTAGGTTCATGGCTTGGCCGTTATTTTCTTGGTAGGGAATTAGCCATTGTTCTGTTAAGAGTGTTTCTAATGCTTGATAGGTTAAATCTGGGCAACTGTGGAGAGTCACCACGGGTTGGGAGCGATTTAACTGCCGGAATAGGGAAAATGAGCCGAATTTCTTTAGGGTTACTGCGGGATAGATAGCTAATGACAAAGATATGAGTTTCGGCATCGGTATTCTAGATGCTGAGGATCCTACTCTCTTGGTTGGGTAATAGTGCAATAATTTCTTCAAAGGAAATGGGATTGTCAGGAATCGTGTGTAAGCAAGAAAATTTAGTGGAAAAAATAGTCGGGATTTAGTGCTTGGACAGTTGATATGCAGTTAACAAGGTACATTGATTATTA # Right flank : GCTGAAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGTAGTCGGGATTTAGTGGTTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //