Array 1 500-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBAN010000100.1 Klebsiella pneumoniae strain DGL1 NODE_100_length_1019_cov_1.345316, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 499 29 100.0 32 ............................. CAGGCCAAGAGCGACAAGAAGAAGGAGAAGAC 438 29 100.0 32 ............................. GCAGCCAGGACCCCGTCCGTAACGGCGTTAGC 377 29 96.6 32 ............................C AGGAGGCGCAGGAGCAGTGGCTCCTACTGCTG 316 29 100.0 32 ............................. GTTCCCAGGTGAGCACCATGGGTCGGAAAACC 255 29 96.6 32 ............................C GGCTGGGATCTAATCTCCAGCTGGGCCAGTTC 194 29 96.6 32 ...............A............. ATGATCTTGGGCTGATTCTGGTGGACACTGTG 133 29 100.0 31 ............................. CCCAACGGGCGATGTCGCGACGGCGGGGCCC 73 29 93.1 0 ......T.....................T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 GTGCTCCCCGCACACGCGGGGATGATCCG # Left flank : AACCCTCGAGCTGACTGCCGCGGGCTATGGCCGCCATGCGGCCAGTTCGTTCGGTGCCAGGGGAGTTGGATCTGCGGCGTCGCACTCGCTGGAGGACTGCGGGAGAGCATCAACCAATGGTGGTTGGCTCCCGCATCGTCGCTTTCGACTGCGAGTTCACCGAACCTGCTCGATGCAGCGGTCGGTGCCCGAGCGTTTGAGCTTGTGAAAAACACGATTTCAAGCGGCTGTCCGGGCCAACGCACCTGTGCGGGTAGATCTTGAGCCACCCGTTCGACAGAGGTGCAGGTTGGCGCTGCTCCGTTGCGTGCTGAATTTTCTGCTCGCCGAGGTGCTCCCCTGCGTGCCGGGAGTCGTTCACCTTCGAATCCACCGGCGGCAGGTGCAAGTACTCTTCCCACACGTGGGACAGGAGTGCGCTCCGGAGGCTACCTTCCTGGCGGCGGAACAAAGTGAATCTATTTTGCGGTGTGGGCTGCTATAGTCCCTGGTCATCAAGT # Right flank : TGACGGCTGAGGGCCCGGGACCACTCACCGAGCGCACATCTCGTA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 523-730 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBAN010000277.1 Klebsiella pneumoniae strain DGL1 NODE_277_length_730_cov_1.325914, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 523 29 96.6 32 ............................G CCAGTTTGCATCAGTTGTTCGGAGCCGTACGA 584 29 96.6 32 ............................T CACACCCATCAGTAGATCAACCGGGTGTCGGG 645 29 100.0 32 ............................. GACTTCAATGACCTGGAACTGGCCCACCTGAT 706 25 86.2 0 .........................---- | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : ACACTTGACCCGGTGGCTGCTGGAAATCAGCCCCGGGGTTTTCGTCGGGCACATCTCCGCTCGGGTGCGGGAGGAGATGTGGCGACGCGTCGTCGAATTCGTGGGTGACGGGCGAGCGATCATGGTGCACTCGAAGCACGGTGAGCAGCGGCTTGCCTTCCAGGTCCACGGGCACGACTGGACCCCGGTCGATCACGACGGTGTCGTGCTCATGCGCCGCCCGGCGGGTTCGGAGCATGTTTCCGACGAGTACACCGCCGGTGCGGCTCCCTCATTCAGGCGGTGGAAACCACCGGGCTCCAGCCGCGCTTCGGGCATCAGCTCCGAAGCCGTGTGGAAACGCCGCGAGAAACGGCGGAAGTTCAAACGCAAGTAGAGCTCGTGCGGACGGCGGGAGGAGGTGACCGCGCGAAGCGATGCCGAAGCGGCAGGCTGACTGGCAGAGGCACAAAGTGAAGCTGTTTTGCGGTGCGGGCTGATATATTCGCTGGTCATCAAGT # Right flank : | # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 226966-229615 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBAN010000007.1 Klebsiella pneumoniae strain DGL1 NODE_7_length_263106_cov_28.007954, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 226966 29 100.0 32 ............................. TAGGGGATCCCGTTCTCATCCACGGCAATATG 227027 29 100.0 32 ............................. GCCTATATGGAACCTGGCTATCTGGTCTCGGA 227088 29 100.0 32 ............................. GAAATTCTGATTTTTTTACCGTGGATTTCCAC 227149 29 100.0 32 ............................. TCTGCTGGTTACAGGAGAAAAAAATGATTGGT 227210 29 100.0 32 ............................. TTTTTTTGACGAAGACGGCAACGAGTTAGAAG 227271 29 100.0 32 ............................. GTCTCTGCCAGTTTTACCTGCTCAGCGGATAA 227332 29 100.0 32 ............................. CTGACAGCTGGCGCTAACCCGTCGTTTATCGC 227393 29 100.0 32 ............................. TATTTTTGAGATGATGGATTGTTGCACACCAG 227454 29 100.0 32 ............................. CACAGATGTATAGCCAAGCGTTTTGCGCCAAA 227515 29 100.0 32 ............................. CGCTTCTCGGCTTCTCTGAATTTATCCGCCCA 227576 29 100.0 32 ............................. ATCCCGACCCGCTCCTCCAGAGCGAATACGAT 227637 29 100.0 32 ............................. TGCTTTATGGCAAATAAGAGAGGATATAACCA 227698 29 100.0 32 ............................. GCGTCCGCCTCCCAAATAGCCAGGCTGTTATT 227759 29 100.0 32 ............................. CTTCCCGCGCATATTCATTGCCGTCAGCCAGC 227820 29 100.0 32 ............................. CCTGAATTGGGTGGACACCACAGCAGTTGGGA 227881 29 100.0 32 ............................. TAAATCCCAGCTGGTTTGACGTAGTGGCACTG 227942 29 100.0 32 ............................. CAATGAAGGCTTATAAGGGTGAAGAGAGCAGG 228003 29 100.0 32 ............................. CAGTCGGTAACGGCTGGGCGTGACCTCAAAGC 228064 29 100.0 32 ............................. GTGCCATTTTTATTTTGCTTAAAATAAATATC 228125 29 100.0 32 ............................. CCTATTGTGTTCAGTCGTAACAGCTGAATCAG 228186 29 100.0 32 ............................. GGCGCGGCGGAATAACCACTTTATGAGCAGGT 228247 29 100.0 32 ............................. GCGACCATGCCGTAGTCTTCAATGACGTAATC 228308 29 100.0 32 ............................. CTGGATAGACTGTTGCTTCACGCCAGCTTTGG 228369 29 100.0 32 ............................. GTTTACTCACCAGTTCGTCGAGGTGGTAGGAA 228430 29 100.0 32 ............................. TTGTCATCGTTCGACAGCACAATGGCTTTGAG 228491 29 100.0 32 ............................. CTTTCGCCAGCTTCAGGAACTTCTGCTCTCTG 228552 29 100.0 32 ............................. GCGCTCGACACGTACCAGGTCTGCTCGGCGTA 228613 29 100.0 32 ............................. CACTCTTCTGGTTGATGTGGCATGCCTTGTAG 228674 29 100.0 32 ............................. CTTTCTATTCCACGGCCCGGTCCCCGGGCCAT 228735 29 100.0 32 ............................. CTGCCGGACCTGGTCGAAATCCTCCCGGAGGC 228796 29 96.6 32 ............................C GCTGCAAAAGGTGGATCTCACGATACGCAAAC 228857 29 100.0 32 ............................. GCTAAGTTACTTACGTTACTTCAGTGGGCGGA 228918 29 100.0 32 ............................. AAAGTTAAGCGCCGCCGTGTCTATAAGTCATT 228979 29 100.0 33 ............................. CCGTAATTTTTCAGACCCGCAATCCCAAAAAAG 229041 29 96.6 32 ............................A AATCGCAAAACGCCCGGGGGCGCTGCGCTCTC 229102 29 100.0 32 ............................. TTCCAAATCCGGTTGGACGACCAGTCACGATC 229163 29 96.6 32 ............T................ GCTTACGATCAGCTGGCTGAGCGATTTGGTAT 229224 29 100.0 32 ............................. GTGCTGGCCTTGAGCTTTTCAGCAATACGTCC 229285 29 100.0 32 ............................. GTGCTGGCCTTGAGCTTTTCAGCAATACGTCC 229346 29 100.0 32 ............................. CCCCGTCGTCATTCGCGCATTCTGCGCACAGA 229407 29 96.6 32 .....A....................... TAACAGGGCCATTTTCCCGGGTTGCCAGACGA 229468 29 100.0 32 ............................. TCACCCTCGTAGCCGATACCACTTTCGCGCAG 229529 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 229587 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTTAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGTACCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11-343 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBAN010001460.1 Klebsiella pneumoniae strain DGL1 NODE_1462_length_396_cov_1.400000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 33 ............................ CTCCCCGCGGTCGCGGGGGTGATCCGACCTTGC 72 28 100.0 33 ............................ GCCCAGCCAGTCGTTGAGTGCGGCGAAGTAGCG 133 28 100.0 33 ............................ GGTCGAGGTCTCCAACGGAACATCCTGGTCATC 194 28 100.0 33 ............................ GCCAGGAGGAGTAAGGCGGACATTCTGGGATAA 255 28 100.0 33 ............................ GAAAAGCAAAACCCCGAGACCGGGGGGTCGCCA 316 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 GTGCTCCCCGCGTATGCGGGGGTGATCC # Left flank : GTCATCAAGTG # Right flank : CGGAACCTCCGGGAAGTCCTGGAACTGGCCAGGGTGCTCCCCGCGTATGCGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : GTGCTCCCCGCGTATGCGGGGGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 21-354 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBAN010001771.1 Klebsiella pneumoniae strain DGL1 NODE_1775_length_365_cov_2.784091, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21 29 96.6 32 ............................G CGGGGATAGGTATCGCATCAACATGAAGCTCC 82 29 96.6 32 ............................C CAATGCCATCTCCGCGAGAGCGCCCTCAATCT 143 29 96.6 32 ............................G GCTGTCGAGCCCATTGCCTCCGCCCGCACCGA 204 29 100.0 32 ............................. GAGCTGGGGTGTGACGGCTACGTCCGGGCCAT 265 29 100.0 32 ............................. GAGCTGGGGTGTGACGGCTACGTCCGGGCCAT 326 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GTGCTCCCCGCGCACGCGGGGATGATCCA # Left flank : GCCGTGACCCGTGCCCTGGCG # Right flank : CACATTCGCCC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [6.7-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11-344 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBAN010001816.1 Klebsiella pneumoniae strain DGL1 NODE_1820_length_362_cov_0.984674, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 ............................. AGAAGTCGCGCTGTTCGTGCTGCTCAGGCCAT 72 29 100.0 32 ............................. TATTCCCCTTCGGTTTCCATGCGCCTGAGGAG 133 29 100.0 32 ............................. TCGCTGTACGGCCACTCGGTTGGATAGCAGCG 194 29 96.6 32 ............................T CCCTGTACTGCAGCAGCTGCTGTGCTGTAGCC 255 29 96.6 32 ............................C GAGGTTGATGGACTCACGCTGGCCGTCGCGCT 316 29 93.1 0 ....C.......................C | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : GCCCCTATACG # Right flank : AACCGCCTCTTCCAGGAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [6.7-11.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //