Array 1 241084-242088 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCWP01000002.1 Escherichia coli strain VREC0297, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 241084 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 241145 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 241206 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 241267 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 241328 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 241389 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 241450 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 241511 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 241572 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 241633 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 241694 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 241755 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 241816 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 241877 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 241938 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 241999 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 242060 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 267791-269161 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCWP01000002.1 Escherichia coli strain VREC0297, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 267791 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 267852 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 267913 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 267974 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 268035 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 268096 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 268157 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 268218 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 268279 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 268340 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 268401 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 268462 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 268523 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 268584 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 268645 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 268706 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 268767 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 268828 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 268889 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 268950 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 269011 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 269072 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 269133 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //