Array 1 51407-53833 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEQG01000002.1 Haemophilus sputorum strain C2015005473 C2015005473_S47_ctg_1007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 51407 32 100.0 34 ................................ AACAAATTGAGGGATAGTTTGAGTTAATAATTTT 51473 32 100.0 35 ................................ TTTACTATGTTGATAAATATTTTTCCAATTTACAG 51540 32 100.0 35 ................................ TTTTATCTAACCCCAAAAAAGGAAACATTATGAAA 51607 32 100.0 35 ................................ TATGCTCAACCGCTACGCCAATAACGCTATAAATC 51674 32 100.0 35 ................................ AACAATTGCTTGTTTTACATCTTTAAATATGTCAT 51741 32 100.0 34 ................................ GTTGGATGGTTTATTGGAGATTGTCGGCAGAAAA 51807 32 100.0 34 ................................ TTCCATTTTTTTATGGAGACAAATTTGTTGGTAT 51873 32 100.0 35 ................................ TTTACCGGGAAAAAATGCCCCAAATACATCTTGAA 51940 32 100.0 35 ................................ AGCGAAGAAGAAGAGCAAGAAGAAGATGATGGTGT 52007 32 100.0 34 ................................ AGCCTTATCCACGATGTAACGGAGGTGTAATGCT 52073 32 100.0 34 ................................ TTCGCCTTAGCTTGTTTTGCTTTTTCTCCTTTAA 52139 32 100.0 34 ................................ AAGTAGTGCATTTAATTGAGCTGATGGCATATCA 52205 32 100.0 34 ................................ ATTGGCTGCGGTCGATGTACAAGGTGGGCGTAAT 52271 32 100.0 33 ................................ ACCATGGATGGGATTATTGACCCATACGGGGAG 52336 32 100.0 34 ................................ GATGGCATCGCAATTTACAACCTACTTAAAAACC 52402 32 100.0 35 ................................ AAAGCCCCGCAACCAGCATTAAAAGTAATTGATAC 52469 32 100.0 34 ................................ TTTAATGCGGTTTTGCACCACAACACAAAATGTT 52535 32 100.0 35 ................................ GGCGCAGCAAGTGCAATCAGAGATTACCACTCAAA 52602 32 100.0 35 ................................ TATTTATTGATGTGGCAAAACGGTATGAGGTTGAA 52669 32 100.0 34 ................................ TGAGATTTTGGACGTGATGTTTAAACTTGAAGAG 52735 32 100.0 34 ................................ ATTTATTGAGAGTCAAATAGATGCCGGAGAATAC 52801 32 100.0 36 ................................ TATTATGCGGTGCAAGTGTCGGCACTTACGATGGGG 52869 32 96.9 35 ....T........................... AAAAATCAAGTTGTTTTTGTTCGGCGGCGAGAATT 52936 32 100.0 34 ................................ TACTGAAACAATCTCTAAAATTGGAAGAAAATAT 53002 32 100.0 36 ................................ GGGCAAGTGTTACTGATGGGTAAATTCCGAGCTCAA 53070 32 100.0 34 ................................ CACAAAAGAGCCTATATTTTAATCAAAATACGTT 53136 32 100.0 33 ................................ AAAAGCCGTTGCGATGTCAGGGGCAAGTTCCGC 53201 32 100.0 35 ................................ GAGGAGTGCCGTTTGATATTTTAGTGCAAAAAGTG 53268 32 100.0 35 ................................ GTTTAGCCGCGCGCTAAAGTTTAACTGCGTGGTGC 53335 32 100.0 35 ................................ ACGAAGTCGGACACTCAACAAAACATTTAGGAATC 53402 32 100.0 34 ................................ CCAATAAGGCATCACATCAGCAAGGTCTAAATGC 53468 32 100.0 35 ................................ ACGCTCATCACAAGCAAATGCTACGCCAACTGTGC 53535 32 100.0 35 ................................ CATCTAGCAATTTAACGGCTAGTGAAAGTGCTTTG 53602 32 100.0 35 ................................ ACATAAATCGGATATTACACTGGTGTAATATTGGC 53669 32 96.9 35 ......A......................... ACCGCTATGCCCTAATAGATAGCGATGCTTTGCCA 53736 32 90.6 33 ...T..A........T................ TCAGCTGATGTAACGGGCGATCTTGATAATGGC 53801 32 87.5 0 ......A.........A.....A.T....... | T [53831] ========== ====== ====== ====== ================================ ==================================== ================== 37 32 99.2 35 GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TTTGATGAGATAAACTATGTTAATGCTGATTACTTACGACATTTCTTTTGACGATCCAAACGGGCAAGCACGATTGCGCCGCATCGCAAAACATTGCTTAGATTACGGCGTGCGGGCGCAATATTCGGTATTTGAATGTGATGTCACGCCTGACCAGTGGGTCATATTGAAAAACAAACTGTTGGAAACCTACGACCCCACATGTGACAGTCTGCGTTTTTATCATTTAGGCAGTAAATGGCGTAATAAAGTGGAACATCATGGCGCAAAACCGGCTGTTGATATATTTAAAGATGTACTTGTCATTTAGTTCGCTAACCTATTGTTCTCATTAAAACCCTGATGGGATAGCGATCCTTATTTTCTTTAACAATTTGAATAAGTTAATAATTTGTGTAACAACTAAGTGTTAGTTATACTTCCTGATACTCCTTATATTTTAAAGGATAGCGAAATACAGTAAATAACTTACTGATTTTTATCATCTTTTTATATAGGGA # Right flank : CTTCGCTGATTATTTGACAAAAGATAGCAAAAGCACTTGATATTCAATAAAACATTCTATATAAGTCAATGGTGAATCTATAGGAGTAGTAGAAATGTTTGCTGTGATAAAAGATATCAATAGAACGATTATATGGGGCGTTAAGATAAGCGTTTCTTTTATCGTGTGCTTCTTGGTTATTTTGGGCGTATTTCTTGCTCTATCTAGTATTGTGCCTCATATTGAGTTCCCTTTCCCATATATATCAGGATTGGCGGGTTGGAAGTTAATCGCTTATTGTTTATTTTGGGCTACTTTTGTTTACATTGGATTGCTGGCTTTAACGAAATCTTTCGTAAAACTTTGTGAGCTTATTGAGCATCTGGCAAAATAAAATTTAATAATTTTTGAAATCCCTCAGTTAGAGGGATTTTTTTATTAAGAGATTTTGTTTCATGCTAGGGGAAAAGTATTGAGCTTAGTCTTAATTCGGCTATGTTTATTAGTGGTCTGATTAAGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //