Array 1 181688-180928 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMTZ01000002.1 Faecalibacterium prausnitzii strain CNCM I 4644 NODE_1_length_469445_cov_43.5106_ID_7912, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================================================================================================================================================================= ================== 181687 23 100.0 44 ....................... TCTTTAACTTCGTCTTCGCTATAAGTCTTATTGAAATTTCAACT 181620 23 100.0 45 ....................... ATGGAACTCTCTTACGATTAGCCCAAACGCAGCATAATTTCAACT 181552 23 100.0 46 ....................... ATCCGCAGTTACCGATACCCACAACAGAGATGTTTAGATTTCAACT 181483 23 100.0 44 ....................... CCTTTGATCAGAGGCATGACTCTGATATCATCACCATTTCAACT 181416 23 100.0 43 ....................... TTTTCAGTCTCTGCGCGGAGACGCTTTTCTTCGGATTTCAACT 181350 23 100.0 45 ....................... GATATTCCTAGCGAGAAATTTGATTTCGTTGGTTAAATTTCAACT 181282 23 100.0 44 ....................... GGGACGCAGACAGAATCGTTGATGATAGATTTGATATTTCAACT 181215 23 100.0 177 ....................... CGCTTCTTCATCCAGTTAGGGCAGCTGGACTTAACAATTTCAACTTATCCCCGCAAAACCCTCTCAGGCGCTGCGCGCCAGCTCTCCCGAAGGGAGAGCTTTTCCAGCTGCCGTTACCCTGTACTAAGCTCCCCCTTTCGGGGGAGCTGGCACGGCGTAAGCCGTGACTGAGAGGGT 181015 23 95.7 42 .C..................... TGATCTTTTTATGGTCAATCCCATTGGCTTCATATTTCAACT 180950 23 82.6 0 ...............G.AA...A | ========== ====== ====== ====== ======================= ================================================================================================================================================================================= ================== 10 23 97.8 59 TATCCCCGCAAGGGGACGGAAAC # Left flank : CTACGGCACGGTGGTCGATCTTGCTTTTCCCGCCATCGACCCCGCCGCCGACGAGGCCGCGCTGGACTCTCTTGCCACGGTATACGCCGACCACATCCTGCACCTTAGCCCGGACGCCGTGCTCTGTCAGGGCGAGTGCACCTTTGTGTACCGGGTAGTCCAGCGGCTGGAAGCCGCGGGCATCCCCGCGCTGGCCGCCTGCTCCCGCCGCAAGAGCCAGGAGACCACCTGCCCGGACGGCAGCACCCTGAAGCGCAGCATCTTCGCCTTTGCCGGCTTCCGCCGCTATGGCTCGCCCTGAACTTCCCGGTGCAGCTGCCCCCATTCAGCCGCCTGTTTCTCCATTTCGGTGGGCGGCTCGCACCCGCTTTTCCAGCCTCCTGCCAAAAATGCTCTTTTATTTTTCGTATGGTTGTGGTATATTGGTCTTGGAATTGTGAAAGCTGCCCTGAAATCAAGTATTTTTCTCTTTTTCTTAGAACAGCTTTGCTATTTCAACT # Right flank : CTCCGCATCAAAAAAAGATGCGGAGTTTTTCTTTTGCGTGCCTTAACTTTTCGGTTTTCGTGGGCTTTTTCTCTATGAACAGAGCTGCTGCGGCATTTTCTCTGCCATGGCTTTTGTATTGCGACAAAATGTGCTATAATAGAGCCAAATTAAAGCATCTCTCACAAAATACACAATTATATTCTTCGTTTGTTGTGCAACTCTTCCACAATTTGTAAAGGAGATGGTATTTTGAACGTTCTCACCCTGCAGTCCACCTATGGCGGGCTGCTGCACGACACCGGCAAAGCGGTGTACCGTGCCGGTGGGCAGCGCGGCAGCCACAGTGAACAGGGCTGCCAGTTTTTGCACGGCGTTTTGCCCGGTGCAGACTGGGCCCCGGTTCTGGACTGTGTGCGTTACCACCACGCCGCCGCGCTGCGCGGTGCTGCAAAAACACTGCCAGCCGATTCCCCGGCGTATCTGGTCTATCTGGCCAACCTGCTTTCCGGCGCGGCTGA # Questionable array : NO Score: 4.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-1.60, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.80,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 410447-413527 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMTZ01000027.1 Faecalibacterium prausnitzii strain CNCM I 4644 NODE_2_length_434777_cov_28.2647_ID_1639, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 410447 33 97.0 35 ............A.................... AAAACAGACGATGAAAATGTAGTATACTGGGATAA 410515 33 97.0 36 ............A.................... TTAAAAAGGCTCAGAAAGGCTTACAAGGGCAAATTA 410584 33 97.0 34 ............A.................... ACAAGCTGTTTGCCGTCGCCGTTGAAATCTGACC 410651 33 97.0 35 ............A.................... ACCAGCACAACCAGGAAGTTACGCATACGTGGCAC 410719 33 97.0 34 ............A.................... ATAGTATGCATTTGCTTTTGCTCCGTCTATCTCA 410786 33 97.0 36 ............A.................... TGGTAAACGGTGGTGCTGTTATGTTTGCTGTTGCTT 410855 33 97.0 36 ............A.................... TGACACTGACATATGACGATGAGCATATACCATACG 410924 33 97.0 34 ............A.................... AACGTTAACACATCAGCGATCATCCGTATGACCA 410991 33 97.0 33 ............A.................... AAAAAATTCATGGGCGAAGCAGACGAAACACCA 411057 33 97.0 35 ............A.................... TTTCGCAGGCGCTCATAGCCGCCAGCGAGGAGGGC 411125 33 97.0 34 ............A.................... CGGTTCCTCCAGCAAGAGCAGCGGCGCAAAATCC 411192 33 97.0 33 ............A.................... TCCGACTATGAGGACGTGCAGACCCCACCAGCA 411258 33 97.0 34 ............A.................... TGTTCCATCTAAAGCTCCTTGCGATAGGCTTTTC 411325 33 97.0 35 ............A.................... GTTATAAATTTGTGCATACGCACGTGCTGGCAGCG 411393 33 97.0 34 ............A.................... AAGGCACACTCTGACGAGCTGAGAGAGGTTAGAG 411460 33 97.0 34 ............A.................... AAAGTAAAGGAATTTGCGTGCAAAGATGGCAGCC 411527 33 100.0 34 ................................. ACAGATGTTGCCTATGGCGGCAACCGTGCGGACT 411594 33 100.0 34 ................................. GCAGGAAATCCAGCACATCAAACGAAAATGCGAG 411661 33 100.0 35 ................................. ACCACGTTGCTGCCATGTTCCAACGGTCTGGGGCG 411729 33 100.0 33 ................................. CCAAGTATGCTGCCAAACCGGCTGACTACATTG 411795 33 100.0 35 ................................. ACTGTGCGCAACGTAGAGGGCGCAGACCTAGGCGC 411863 33 100.0 35 ................................. TTGGGGCAGCATCGTTGATGCTGCAATGAGCCCTG 411931 33 100.0 36 ................................. ACATTATCCCACTCTATGGGAGAGTGTCTTTTGCGG 412000 33 100.0 36 ................................. ACTGGTTACCATGTTAGTCCGGTACCTATAATCGGC 412069 33 100.0 35 ................................. GGAAAGCGGAAGTCAAGCCGGAACAAACGTAGATC 412137 33 100.0 35 ................................. AAAAAATTCATGGGAGAGGCAGACGAAACGCCATG 412205 33 100.0 36 ................................. GCTGCCTGTTCCTTGGCTGTTTTTGGCGCTGCTCTG 412274 33 100.0 35 ................................. GGTTGCTGCATAGTCCACCATTTGCTTGCTGCACG 412342 33 100.0 37 ................................. ATCTGTTTTGTGGTACTCTTGTACTGGAAAAACGCCT 412412 33 100.0 33 ................................. TTGCGCCGATCATCCTTGCGGATGTGGTCGCAG 412478 33 100.0 34 ................................. CAGTAAACAAATTCCACGACTACTTTACCAGTTG 412545 33 100.0 34 ................................. TTGCTGGATGTCGATTGGTTCAGTTTCTAGCAGC 412612 33 100.0 37 ................................. CTTTTGGAATGCTCGCTCTGCTGCTGCTTCTGCGGAG 412682 33 100.0 39 ................................. ATTATAAGCGCTGTGCGCGTCATGCTTTCGGTTCGCGCC 412754 33 100.0 33 ................................. TCACTTTGCCCGGTATCGCGTGTTATGCACACC 412820 33 100.0 35 ................................. CGCTTGGGCTGCGGTCTAGCAGCGGAAGCTCGTCC 412888 33 100.0 33 ................................. CGTATGTGGTTGTTACTGCCGTTAAAGGCCGAG 412954 33 100.0 34 ................................. TGTGCACACGCGCCGAAAATAGTGTTGACACAAA 413021 33 100.0 34 ................................. TGTTTGCCCAGCTCTTGCCCCTGTCCATGATGCA 413088 33 100.0 35 ................................. CGCTTGGGCTGCGGTCTAGCAGCGGAAGCTCGTCC 413156 33 100.0 33 ................................. CGTATGTGGTTGTTACTGCCGTTAAAGGCCGAG 413222 33 100.0 37 ................................. TGCTCCTGAGATGACTCAAATACACTTGACTGAGCTG 413292 33 100.0 34 ................................. TCGTCCACATCCTCGAAAGTCCCTGCTGGTAGCT 413359 33 100.0 35 ................................. CATAAATTGGTAACTGGGCAAATTAGTTGACAACT 413427 33 100.0 35 ................................. GCCCTCCACGCCAAAGGTGATGAATTTGGTCTTGG 413495 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ======================================= ================== 46 33 99.0 35 GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT # Left flank : CTCCGTTTTTCTGGAAATGAGGTGTAATCATGCTGGTACTGATTACCTACGACGTAAACACCGAGACCTCTGCCGGACGCAAGCGGCTGCGCAAGGTTGCCAAGAAGTGCGTAGATCATGGGCAGCGGGTGCAAAATTCCGTGTTCGAATGCCTGCTGAACGCTTCGCAGTACGCAGTTCTCAAAGCAGAGCTGACCGCCTTGATCGACCCTGCCTTGGACAGTCTGCGGTTCTACCAGCTGGGCAACAACTACCAGACCAAGGTCGAGCACGTTGGACTGCACCCGGAGTTTGCCCAAGACAGCGTGCTGATCTTTTGATGTCCGGCCAGTGCGAACCAGCAGCACACATGGTTTTCCGGGACACTTCGCACCAGAATACCAGCCGTTTGCGCAAGTAACGGTGTGATTTTGCGGTTTGGTTTGCAGACATCTCTTTGCAATTTGTGCAGGGAGGTGTATAATGAGACAAAAGCAGAGGGTTTTCTCTCTGTTTTTGCT # Right flank : TTTAAAAAAGCTATGGTAAAATCGCAGCGTCCGAAACATCCTGCGGTCTGCCGTTATTCACATACGGGTTATACCAGACATTCTGGAATATGCATCCTTCGATCCAAATGTTTTCGCACCAAATGCTCTCGCCGTTCTCCATGCGTCCCCGCAGCCGGATGCCGCAGGTCCATATTTTGTTTACACCGTTCGGGTTGATGCCTTCCCATGTGCAGTTGACGAACCAGATGTTTTTGCACCCCTCCAGCACCATGTTCGCGCCCTTCCAAAAGATCACGTTCCGAACTTCCAGATCTTCAACGTTGTTGACGATGATCTCAAAGTACTTATACTTTTTGTTTCCTCCGTCCACCACGCAGTTGCTCTAGCTCAGCGCCGCCGTCAGTGCTTCCGTGTCGTCCGTCTCTCCGTCCCCCGCCGCACCGGGAATACCCGTCACTGCGCCGCCGCCCGTGCCGCTTCCGGCCATGTCCCACGCTGCTGCAATGCCTGCTTCCATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT # Alternate repeat : GTCGCCCTCCTCACGGAGGGCGTGGATAGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCTCCACACGGAGGGCGTGGATAGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.60,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //