Array 1 121660-124831 **** Predicted by CRISPRDetect 2.4 *** >NC_014964.1 Thermoanaerobacter brockii subsp. finnii Ako-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 121660 30 100.0 38 .............................. AGCTGAAAGACATTTTAAAGTAGCAGGGCAAGGTACAG 121728 30 100.0 37 .............................. AGTCTATCTTGGCCGACAGGTCTATCCCGATGTAACG 121795 30 100.0 37 .............................. ACAAAAGCGACATGACAATTACTTGCATGAATGGCAA 121862 30 100.0 36 .............................. GCAACATTGGCAAATGAGCTCAAGACGAAATTTAAT 121928 30 100.0 35 .............................. GGCCGTACCTCGGTCCAGGCGATCCGAGGTTGAGG 121993 30 100.0 36 .............................. ATTTATAATCTACAGATAAAACATAAGTTGTGCCTG 122059 30 100.0 37 .............................. TGCATTTCCCCACCTTCGCGGTAAAGCTCCACGAACG 122126 30 100.0 36 .............................. CCAAGAGCGAAGGCAGCGCCAAATGCGCCGGCATTA 122192 30 100.0 36 .............................. CGAGACCCAGAGCGGCAAGTTTGACATGATCAAGAA 122258 30 100.0 37 .............................. CGCCGAATTCAGCTGGAAGCATGGGGAGTGGAAGGAG 122325 30 100.0 38 .............................. ATACTATCACGGCATAAGGCACAAAAGATTGTTTATAT 122393 30 100.0 37 .............................. AAGTATAATCAAAGCGGATGTGCTGACCCAACAGTTT 122460 30 100.0 36 .............................. ACGTATAGCTTCAAACTGGCCGTAATTATAGGCAAA 122526 30 100.0 38 .............................. ATTTTCGACGATATACAGAAACCCACAACAATCCAGAG 122594 30 100.0 36 .............................. ATTTATTGACATGCGGCATATTCGGATTTGGATGGC 122660 30 100.0 37 .............................. TTTGCTGGTGCTCCAGAATGGTGCGTCCGGTTCTTTG 122727 30 100.0 38 .............................. TTGACAATAAAATCGCTTTTTCTGTTCAATATCCTATG 122795 30 100.0 38 .............................. TGCAAAATTTCAGAAAATTTCAGGAAAGGAGGTATGCG 122863 30 100.0 37 .............................. TGGGATGGTCGGATAAAAAAATTGCTGAACAATTAGG 122930 30 100.0 36 .............................. AGATACTTTTTAACTTCTTTATATATTTAATAAAAA 122996 30 100.0 37 .............................. ACCGATTCTTGTTCCTGCTGATTGTAGCAACATCAAC 123063 30 100.0 37 .............................. AAACCCGTAGACCGTCATACCGTGAAATCCTCACCGG 123130 30 100.0 36 .............................. GCCTTTTTGTCTAACACTTGGAATGCTATTAGCACG 123196 30 100.0 37 .............................. ACACAACTGAGGTGACTGTAAGCCGATGGAAGCAAAG 123263 30 100.0 37 .............................. GTTTAGGCACATCGTTTTCGCAGTTGCCGTTGCTAAG 123330 30 100.0 37 .............................. TGAGATTAAGGATTATCTTGTTGCTGACTGGGAGTTA 123397 30 100.0 38 .............................. ACTCTTGATACTTGATTGCTTCTCTTTCTGCATTCCAA 123465 30 100.0 37 .............................. CAGCACTCTTCCACCCCGCCGTTGACTAGTACGTTAA 123532 30 100.0 40 .............................. TAATGATTGATTCTTCTCTGCCGTCTTTATAAAGCACAGG 123602 30 100.0 37 .............................. AACAACATATTATCAAAATTATGAAATTTCACAAACG 123669 30 100.0 35 .............................. ACAAGCTCGCCTATCTTTCCACCAGCTGACTGCAT 123734 30 100.0 38 .............................. AATCCTGGCCCCGGGCAAAGACCACTTCTTCATGCTCC 123802 30 100.0 36 .............................. TGTAAACGAGGGAAAGGATGAAAAAAAAATGATAAA 123868 30 100.0 36 .............................. TGATATTTAAGCGCGCGATGTGGAGGGGTCTCGTGG 123934 30 100.0 36 .............................. CGTGCCTGCAGACTGCAATGCCTACGACGTCATGGA 124000 30 100.0 36 .............................. AGTACTAAAGATTGAGGAGGTATAAACATGGAAGAG 124066 30 100.0 37 .............................. CAGCCTGTTGCTTATAATTAAGGTAACAGCAGGTTAG 124133 30 100.0 37 .............................. AGCTGTTCCTGCAAGGATGCGATGGTTGCAGTTTTTT 124200 30 100.0 38 .............................. CCACCTTTTTTACCTCAATTAGTTCTATAGTATTAAAG 124268 30 100.0 37 .............................. AAACTAGTGATGGATATGTTGATTGGCTAAGTATTGA 124335 30 100.0 36 .............................. TTGCTTTAGCAAGATTGTTATTTTTTAACATATTAC 124401 30 100.0 36 .............................. GAAAAGCAGTTGGAGGAGGCAAAAGAACATGAAAAG 124467 30 100.0 37 .............................. CAGTATTGAAACATTAAAAAATAATGCAGAGCTGAAG 124534 30 100.0 37 .............................. CCTGTAGCACCTTTGTAGTTATCTAAAACCTCAATGG 124601 30 100.0 37 .............................. TAATATCCTGAAACAAAGAAAAAACGCTGAATCTCAG 124668 30 100.0 38 .............................. TAGAGCCTTTTAATATTGCAAAGGAAAAGGTGCTTTCG 124736 30 100.0 36 .............................. ATCGCTTAAATTGTTCTTCTGTTAATTCATTCTCTG 124802 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 48 30 100.0 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : AATATGTGTATTTCCAAATTTGAATTAATTGAAGATGACTATTATAAAGTAGATGCATTTATTGAATTGAATGATGAAGCTAAAGAATTGTGGCATAAGTATGTTGAGCTTAAAGACATAAAAAATCTATTTGAAAGGAGAAATATTTTTAATCGATTTAAAGCTGACTTTTATAAATATGTAATATCAATACCTGCAACAGTGGAAAATATGCCTCCTGATATTTGGGGTTTTAAGTATGTAAATTATGATAGTTTAAATGATTATTATGACAAAGAAACAGGTTTTATAACAAAAGGAGTCACAAGTATATGGTAACAAATTTGTCGTCGATCCCAAATAAGGCAAAAACACCTGGGGATAGACGACATTTTTATTTTTCTGATTTTCATAAAGTAATTGATTTTATTGGACAATATGGTATAATAAAGTCAAGATACTTGACAGAAATTAAAAAATTGTAAGGTGTATAATGTGCTATTTATGCATGTTAGAATGAG # Right flank : CAGTATTAAAAATTAAGGAGGTTTAAAAAATGGAAAAGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCCATACCGATGTAAAAATATGGGATAAATAAATGGTTAATAAAGTTAAATTAAAAGTTAAGACACTGCAGATTCGACCGTGACCTTAAGGCCTAAAGACTCTAGCTTTTTTAAAGATTGACGAATAATCATATTACGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATATGGTTGCTTTTGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCCCTTGAGGCAGCTCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTCTTGCAGACTTTTGTTTACCAGCACTTTCATTATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 126529-127963 **** Predicted by CRISPRDetect 2.4 *** >NC_014964.1 Thermoanaerobacter brockii subsp. finnii Ako-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 126529 30 100.0 38 .............................. CGCCGAGGTCTTCTCCTGTCGCGATATAATGCGACAGG 126597 30 100.0 36 .............................. GGCAATAGTTTTATTACGTCCAAAACAAACTAAAAG 126663 30 100.0 37 .............................. AAAGGGCGGTTAAACTGCCTGAAAACGGCATAGTGGG 126730 30 100.0 38 .............................. CATGGAAGCAGCAGCCGAGGCCACAGGTGGAGTTTATG 126798 30 100.0 38 .............................. ATGCACCTTGCTTTAGGAGTGCATAAGCCTCTCTCCCG 126866 30 100.0 37 .............................. TAAAGCAAAAAACCAGTGGCTTTGCTGCAAGGGTTGA 126933 30 100.0 36 .............................. AGCTGTTGTTTTGACATATTCATCATCCTTTCTGAA 126999 30 100.0 39 .............................. TGACATTGTCTTCTTTAATTACCTTTCTTATGAAATCCG 127068 30 100.0 35 .............................. GCAGGCAACCCAAAGCGGATGCATTTATGGATTGG 127133 30 100.0 36 .............................. ATTAAGTTGTTGGGCCATGATATCAGGGGCAATAAC 127199 30 100.0 36 .............................. TAAGAACCTGTCATAATCTTTTCATTCTTATTTCTA 127265 30 100.0 36 .............................. AAGGAATTTTGGCTAATAAGCTTGAAAACTTCCATC 127331 30 100.0 37 .............................. CAAAAATTCTGTACTTTATACCGTTGATTTTTTTATG 127398 30 100.0 37 .............................. TACGCAGTACATACAGCAAAGAAGCAGATATTACAGG 127465 30 100.0 38 .............................. TAGCACCGGCATCCAGTAATCATCATGGAAATTATGAG 127533 30 100.0 38 .............................. CCATGACGTGGCGGCATCATTACAATAAGACGATTAAG 127601 30 100.0 38 .............................. TCTACCGTGACGGGTCGGTGGTCCAGCCGACCGAATAG 127669 30 100.0 38 .............................. GTCCATCTTTTTATATTAGCCATCATTATCACCTCAAC 127737 30 100.0 36 .............................. TGGATTACGTGGGCATAGAGAACAAGGTTGACGCCA 127803 30 100.0 35 .............................. CATAGGCCGTGGCTGGGCCGGTATCGGGTATAACG 127868 30 100.0 36 .............................. GGTATATAAACGTCTACGACAATGATGAAGATGTAT 127934 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 22 30 100.0 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : TTCCATAGCAACAACAGAACAACCTTTAGCTTTAATAAATTCTTTTAATGCAATAAGGTCATCGGTCATAGTTGAAAAAGTGCGGATTTCTTTACCTTCTGGTGTTATTATACAAGCTACGACATTCTTTTTATGGACATCTAATCCGCAAACGTGAGAGTAAACTAAATCCATGAAAGAGCCAACTCCTTTTTTAAAATTTGAACGATAGCGACTGTAAAATTGAAGAGCTGGTGCAACAACCATAAGGGGTTATTCTATCCTGCGTGCTTCCCGTAAAGGGAGCAACAATCTGTGGTGCACCTGGTCGTTGGAGTCTGTCTATGAGTCGGGCTCAAAGCACCAAGGTAAGAACGACCTTTCTTCACCAGCCGCTGTACTGATTATATCATCAAAAAAGGACATTTTCATCCTCTGCTGGTGCCGCATTTGCGGCATGGGAGTCTATAAGGAATTGAAACCTAATTTGCTTTAAGCTTGTTGCTACAAGATAGACCTTG # Right flank : CAGAGGAACAATTGGAATGTATGAAATAGGACAAAGAGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCCATACCGATGTAAAAATATGGGATAAATAAATGGTTAATAAAGTTAAATTAAAAGTTAAGACACTGCAGATTCGACCGTGACCTTAAGGCCTAAAGACTCTAGCTTTTTTAAAGATTGACGAATAATCATATTACGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATATGGTTGCTTTTGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCCCTTGAGGCAGCTCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTCTTGCAGACTTTTGTTTACCAGCACTTTCATTATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 131317-133488 **** Predicted by CRISPRDetect 2.4 *** >NC_014964.1 Thermoanaerobacter brockii subsp. finnii Ako-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 131317 30 100.0 36 .............................. TGCCATCACCTATCATACTATCTCCATCCACTCTTA 131383 30 100.0 37 .............................. CCATCTCAGACCGTGCAGAAAGCAACTTGTCTAATTG 131450 30 100.0 36 .............................. AACTATGACATATAAAATTTAATGTGCCTTGTGGAG 131516 30 100.0 37 .............................. CCAGTACCGTAGCTTCCTACAAATATGATGCCTACTC 131583 30 100.0 38 .............................. TTTCCCTCTATATATTCAACAGGTTCAGGATATTTACG 131651 30 100.0 37 .............................. TTGAAAGTAAATTAGGAGAAAGATTTCGTGCAAGAAG 131718 30 100.0 37 .............................. CGTGTTCCCAAAAAAGTGGACATGGTTCTTGTTCTTC 131785 30 100.0 39 .............................. ATTATTTGCTCAATAGCCGAGCAGAGAACGGATTTGCCT 131854 30 100.0 36 .............................. TTTCCTCTCGGACCGCCCCATCCATTACAGCAGCCG 131920 30 100.0 38 .............................. CATGCTCTCTCTGTAGTTGTGCGGCTGTTCCCGGTGGG 131988 30 100.0 35 .............................. TCTACCAATGCATGGACGATATGCAGGACACCTGG 132053 30 100.0 36 .............................. GCGAACCCATACTGCAAAGCCTCTTCTGCTGTCATC 132119 30 100.0 37 .............................. ATGCTTCCATCTTTTTTCGCCTCCTCAGTATCTTTCC 132186 30 100.0 37 .............................. ACAATAAGGCGATCCCGGCGCTGATTGATTTAAACGG 132253 30 100.0 36 .............................. GTTAATACGGCCGGCATGTTTGTCTTGCGAAGCACG 132319 30 100.0 37 .............................. CCTCGGACGATGCTAAAGCAACTCTTTCACCTTGCAG 132386 30 100.0 40 .............................. CAGAAAAGTGTATCATTGTGTATCATGTTTCTTGAGTTTG 132456 30 100.0 37 .............................. CACATTTCAGCAATTCTCGATACTATTGCATCGCCTG 132523 30 100.0 37 .............................. GAAGAAGAGGAATAGAGAGGGTTTACTCCCTCTCTTC 132590 30 100.0 37 .............................. TTTTGTCCGAGGGACTTGGTCTAAACGTGGACAGCGA 132657 30 100.0 36 .............................. AGATCTTTTTGAGGACAATTACCTTTCCGTCTATAT 132723 30 100.0 38 .............................. TGTGTATTACATTGCCTTGTTTATCAAGTGGTTGTATA 132791 30 100.0 38 .............................. TTACGTGCGCAAAGATGGCAGCATCTTCCGAGGCAGAG 132859 30 100.0 37 .............................. ATTATCTCTTGAAGCGCCTTTGCAGTGTCGAATTTTT 132926 30 100.0 37 .............................. TTTGGAATTCCTTTAGGCGCTCGAACTCACCCATCTG 132993 30 100.0 38 .............................. AAATACTCGCCGGCGCGAACCTTAATCTTCACCGGCCA 133061 30 100.0 37 .............................. CCCATAACCTTGGGAACACAAATTATATGGTGAACAT 133128 30 100.0 37 .............................. AGAAACTCGCAGAACCCGGCCAACCTGCTGGCTATAG 133195 30 100.0 36 .............................. ATAAAAAAGTTCCCCGTTGTTACCTCATGTTGCTGT 133261 30 100.0 37 .............................. CAAGATAAATGGGATAGCCTTGTTGAGGCAGCAAAAA 133328 30 100.0 36 .............................. CCAACGCTCCCGGTGGTCTTGCGCTGTTCTGGAGTA 133394 30 100.0 35 .............................. ATGTCTAACCTATCAAGTACGTCTTTTATTGCTTG 133459 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 33 30 100.0 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : TACTTTCCATAGCAACAACAGAACAACCTTTAGCTTTAATAAATTCTTTTAATGCAATAAGGTCATCGGTCATAGTTGAAAAAGTGCGGATTTCTTTACCTTCTGGTGTTATTATACAAGCTACGACATTCTTTTTATGGACATCTAATCCGCAAACATGAGAATAAACTAAATCCATGAAAGAACCAACTCCTTTTTTAAAATTTGAACGATAGCGACTGTAAAATTGAAGAGCTGGTGCAACAACCATAAGGGGTTATTCTATCCTGCGTGCTTCCCGTAAAGGGAGCAACAATCTGTGGTGCACCTGGTCGTTGGAGTCTGTCTATGAGTCGGGCTCAAAGCACCAAGGTAAGAACGACCTTTCTTCACCAGCCGCTGTACTGATTATATCATCAAAAAAGGACATTTTCATCCTCTGCTGGTGCCGCATTTGCGGCATGGGAGTCTATAAGGAATTGAAACAGGTCAAACCTGGGGCAAAGACTTACGACGGGAAA # Right flank : CTGGATAGCAAAGGCAAGTGCAGAACTGGATAAAAAGAGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCCATACCGATGTAAAAATATGGGATAAATAAATGGTTAATAAAGTTAAATTAAAAGTTAAGACACTGCAGATTCGACCGTGACCTTAAGGCCTAAAGACTCTAGCTTTTTTAAAGATTGACGAATAATCATATTACGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATATGGTTGCTTTTGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCCCTTGAGGCAGCTCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTCTTGCAGACTTTTGTTTACCAGCACTTTCATTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 135184-136814 **** Predicted by CRISPRDetect 2.4 *** >NC_014964.1 Thermoanaerobacter brockii subsp. finnii Ako-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 135184 30 100.0 37 .............................. GATAGCCTTCAGCTATTAACTTTGCCGCTTCCAATTG 135251 30 100.0 36 .............................. GCTGGTGCTTATTATTGGAAAGGATATAAACAAGCA 135317 30 100.0 35 .............................. CGCTGTCGTCTTTGTTAAAGGACCTGTACCCTGCA 135382 30 100.0 38 .............................. AGATATTGTTCAATATTGCATTTATCTCCGCTTCGCTT 135450 30 100.0 37 .............................. TGTAGAAAATGTCAAAAAACATCAAAAAGGAGGTGTG 135517 30 100.0 35 .............................. AGTAAATACGGGAACAGAAGCAGCACCCGTGTGGA 135582 30 100.0 36 .............................. CATTGCCACTACTTGCAGCAGCAGGAGCATCTATAA 135648 30 100.0 37 .............................. CGTAGAAATAGACCCACCATTTCATCCAGACACACAC 135715 30 100.0 35 .............................. CTGATTGAGTACTAGGGAGGGAGAGAGATGTATCC 135780 30 100.0 37 .............................. AGCGCTTGAGGATGCATACATGAATAATACAATTTTA 135847 30 100.0 37 .............................. CGCCCAAAATGGCGCTTAAAACGGCTGCAAATTTGTC 135914 30 100.0 37 .............................. CCAGCCTGTAATGCAGGGTCGCCTACAAATCCGACGT 135981 30 100.0 38 .............................. TTCTTTAGATATACTTAAAAGCAATGTAGAGAAAGGTG 136049 30 100.0 37 .............................. CGAGTGAAAAGATGATACCATGTCGCTTTGAAATGAG 136116 30 100.0 35 .............................. TCCCTAGTAGTTTAGCCATATCAGCTTGTTTTAAA 136181 30 100.0 36 .............................. AGCTCTTTCATTAATTTTGCAGCTTTGTCTGTCGGA 136247 30 100.0 36 .............................. TTGCCAAGCTGTTTTGCTAATTTGCTCATTTTTGCC 136313 30 100.0 37 .............................. TCGATATAATAGCTCTAAACGTTTGGCTTTGCTTTGT 136380 30 100.0 40 .............................. ATATCCTCGCCAGATACACATTGCTCGCTAACATACAGGC 136450 30 100.0 36 .............................. TAACGCAGACGTGGGAGGTTGCCGTGGATTCGGTTG 136516 30 100.0 37 .............................. TCATAATCTATCAAACCGCTTGCTATTGCAAGCATGA 136583 30 100.0 36 .............................. ACATTGTTTGTAGTTTTGGTATGTTCTGTTGTATAC 136649 30 100.0 39 .............................. TATCATTCCAACTACCAACTTTTGTTAAATAATATTCTC 136718 30 100.0 37 .............................. TATGCTGCATACGTCGAATACGGCACAAAAAAGATGG 136785 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 25 30 100.0 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : TACTTTCCATAGCAACAACAGAACAACCTTTAGCTTTAATAAATTCTTTTAATGCAATAAGGTCATCGGTCATAGTTGAAAAAGTGCGGATTTCTTTACCTTCTGGTGTTATTATACAAGCTACGACATTCTTTTTATGGACATCTAATCCGCAAACATGAGAATAAACTAAATCCATGAAAGAACCAACTCCTTTTTTAAAATTTGAACGATAGCGACTGTAAAATTGAAGAGCTGGTGCAACAACCATAAGGGGTTATTCTATCCTGCGTGCTTCCCGTAAAGGGAGCAACAATCTGTGGTGCACCTGGTCGTTGGAGTCTGTCTATGAGTCGGGCTCAAAGCACCAAGGTAAGAACGACCTTTCTTCACCAGCCGCTGTACTGATTATATCATCAAAAAAGGACATTTTCATCCTCTGCTGGTGCCGCATTTGCGGCATGGGAGTCTATAAGGAATTGAAACCCTATCAGCTCCGGTGGCACCCCAAACGCAATAGC # Right flank : CCCATGTTGGTTTTACGCTCAATCTCGGTTACGTAGAAAGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCCATACCGATGTAAAAATATGGGATAAATAAATGGTTAATAAAGTTAAATTAAAAGTTAAGACACTGCAGATTCGACCGTGACCTTAAGGCCTAAAGACTCTAGCTTTTTTAAAGATTGACGAATAATCATATTACGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATATGGTTGCTTTTGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCCCTTGAGGCAGCTCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTCTTGCAGACTTTTGTTTACCAGCACTTTCATTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 955169-956400 **** Predicted by CRISPRDetect 2.4 *** >NC_014964.1 Thermoanaerobacter brockii subsp. finnii Ako-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 955169 30 100.0 36 .............................. GATAAAGATTGGCAAATAACTGTGATGTAAGGTTAC 955235 30 100.0 37 .............................. GCACAAGAAAAACCTGTACAAGCAGGTAACTGGATTG 955302 30 100.0 36 .............................. TTTGACGTTGTTTCTTGCTCCACTTCTTCTTTTTGC 955368 30 100.0 39 .............................. AAGGCTGAACTTGAACAATCTGAAGTGAAGTTGGTACAA 955437 30 100.0 39 .............................. TTATATTGAAATTGACTGGAATTTTAGAGAATTTTACCT 955506 30 100.0 37 .............................. AAATATGCTTGTACAACTTTATTGATGAGTTCTTGAC 955573 30 100.0 36 .............................. AAAAATTGGACAGCACAAGGACTAAAAACGAGAGAA 955639 30 100.0 36 .............................. ATAAACTTTTTTACGTCTTGCAGTTTCATTTTTACC 955705 30 100.0 36 .............................. AGCAATTGTACAGAGCACACTCAAAGAAAAAAAAGA 955771 30 100.0 39 .............................. ATTCCGCTTCTCTTAAAAAACTTTTGTGCGGAAAAATGT 955840 30 100.0 37 .............................. CCGGCATCCGGGCCACCTCCCTGTTACTGTTACTCTC 955907 30 100.0 36 .............................. TGGGACCACTACTATGAGCTGATAGAATACGACAAA 955973 30 100.0 36 .............................. ATGGGAAGCATTCGTATATTTCGTAGGTTTTGCAAT 956039 30 100.0 35 .............................. AGGTGGGAGAAAGACAACAAAAGCAATGCACTTGC 956104 30 100.0 36 .............................. GCATTAAAAATTGCCAAACTGTTGAATGAATATGAG 956170 30 100.0 37 .............................. ACACGCCACCCAAAACACAGTAACCACAATTGCAAAC 956237 30 100.0 38 .............................. TGGTACTTAGGCTAACAAAAATGCCGGCCGTATTAACA 956305 30 100.0 36 .............................. AATTATTGCAGAGGCAATGGCAAAAGGCTTAAGCAA 956371 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 100.0 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : ATAGGTTCAACCTTTAACAAAGTAGTAAATTCTTTAGTAGTAGATGTTTTAACTCCATTGATTGGAGCCATATTCGGTGCTCCAGATTTTTCTGCTATTAAATTAGGTCCAATAGCCATAGGCAATTTTCTTAACGCTGTTGTTAACTTTGTTATTGTTGCTGCAGCCATTTATTTTTTCATAGTAGCTCCTATGAATGCCATTAAGCGACGTAAACCAAAAGAAAAAGAACAAACACCACCTGAACCATCAGAAGAGGTAAAAATTTTAAGAGAAATATTAGAGGTATTAAAGGAAAAGTAAGGTAAGAATATTGATTAATATAAATTTGTCGTCGACATAAGATAATGCAAAAAATGTTGAGGATCGACGACAAATTATTTTTTCAATTTTAGAAAATAGTTGATTTTGTCGAGCGATATGGTATAATAAAGTAGAAATACTTGACAAATAAGATGAAAAAAGAAAAATTTGTTCTTTATTATATTTGATTATAATGG # Right flank : CATGCGGTGATGGCTTATGAGGATACGTATATTGCGTAGGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCCATACCGATGTAAAAATATGGGATAAATAAATGGTTAATAAAGTTAAATTAAAAGTTAAGACACTGCAGATTCGACCGTGACCTTAAGGCCTAAAGACTCTAGCTTTTTTAAAGATTGACGAATAATCATATTACGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATATGGTTGCTTTTGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCCCTTGAGGCAGCTCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTCTTGCAGACTTTTGTTTACCAGCACTTTCATTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //