Array 1 760082-760659 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017372.2 Halorhodospira halochloris strain DSM 1059 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 760082 29 100.0 32 ............................. CAGCGACAATTAACCGGCATTCCTGGCAAAAT 760143 29 100.0 32 ............................. CTCCGACGCTGCTCTCCTCAGCTTCGGCTTGG 760204 29 100.0 32 ............................. GTAAGTACCCCGACGCGGAGCCGTCGCACTAC 760265 29 100.0 32 ............................. CGCGCTAATGCACTGCTGGATTTGCAAACTGA 760326 29 100.0 32 ............................. GAGCTTAGACGATGTGATGCGCGCTAATGCGC 760387 29 100.0 32 ............................. CGCGTCTTTAGCCGCCGCCTCTGCGCCTTCTT 760448 29 100.0 32 ............................. TCTCGGCTAACGTTTTCCTCATGCCTCGATCG 760509 29 100.0 32 ............................. AGCGGCACGTTTACCATGCCCGAAGATGAAAT 760570 29 100.0 32 ............................. CAATCTTAGCACTGTCAAGATCGACGGACTGG 760631 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GCGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : CCGCCGCCACCAGCCCCCGAGGCTCAACCCCCGGCTATTCCTGAGCCAAAATCCATCGGTGACCACGGCCACAGGAGCAAGTAACATTGGCTATGCTGGTAGTTGTAACGGAAGCGGTGCCTCCTCGATTGAGGGGGCGTCTGGCCATCTGGCTGCTGGAGGTGCGGGCCGGCGTCTATGTCGGTGATGTGAATCGACGTGTGAGAGAAATGATCTGGGAGCAGGTCAACGCCCTGGTGGAAGATGGGAATGTTGTCATGGCGTGGTCGAGTCGCCATGAATCCGGATTCGAGTTCCAGACGTGCGGGAAAAACCGAAGAGTACCAGTCGATTACGAGGGGCTACGTTTGGTGCGCTTTGCTCCAGATCCGGAGGCGGAAGGGTAACATTTTGATTTTTCATGGTTCTTTAAAAATCTGGCATTTTTGTCGAAGGCTGATTTTCTTGGTGCGAACGAGAGTTTTCGTTTTGGCCTTTTAAATCATCTTGTTATAGGAAGT # Right flank : GTTGTGCCGAACCACCCGCCGAAGCGAGGGGCCGTGTTCTGGTCAAATGATTTCGGACACCAATTTTAGCAGCGTACCTCAGCATACTTCCGCCGGGGCCAAGCCCTCCAAGCTGGTATGGCCGCGGCCAGCGTTGTATTCCCATTCAATAAATTGAGCTATGTCTTTGCTGGCATCATGAAATCCCTGGTAACGACAATGATCGGTCCATTCACTTTTGAGACTGCCGAAGAAACGCTCCATAACCGCGTTATCCCAGCAGTTGCCCTTGCGGCTCATAGAGGCAATCATTCCTTCTTGTCGTAACCTATCTTGATAAATGGTGGATGCATATTGACTGCCGCGATCTGAATGATGCACCAGTCCGGGTTCCGGATTACAGCGTTCTATTGCCATTTCAAGAGCATCTAGAGTTAATTCTACACGCATATTATTGGCTATAGCCCAGCCGACAATTTGGCGATTGTAAAGGTCCATAACTGCAGCCAAGTATATCCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 761958-763756 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017372.2 Halorhodospira halochloris strain DSM 1059 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 761958 29 96.6 32 ............................T CGGACTCGACCTCCTCCATCGAGCCGTAACTC 762019 29 100.0 32 ............................. GTATGAGCGACAGCAATCTTAGCACTGTCAAA 762080 29 100.0 32 ............................. GCACAGACGACTACTGAATCTTACGGTTTCCA 762141 29 100.0 32 ............................. ATAATGCAAGACATGCTAACCGATGCAAATCC 762202 29 96.6 32 .......T..................... ATATCCTTAACGCCCTCCGAGACTACTAACCA 762263 29 100.0 32 ............................. GTCGGGGCTGTCTTAGTGAGGCCCGACCGGAC 762324 29 100.0 32 ............................. TACCCTCATCTTCCGATGAGACTAACATATCC 762385 29 100.0 32 ............................. GACGACGAAACCATTCGCGCTAGCGAAGAATA 762446 29 100.0 32 ............................. AGTTGGGTGCTGAGCTTGTCCCTGCAATGCTT 762507 29 100.0 32 ............................. CGTTCAGCTGCTCGCGGACACGCTCTTCGTCA 762568 29 100.0 32 ............................. CTGCCCATGGAATATGAGCCGGATCGCCATTG 762629 29 96.6 32 ............................A TCCCGCGTCTATACCGACAAGAGTTTGGGCGC 762690 29 100.0 32 ............................. TTTGCCGCGGAACACCCTGAAGCCACGCCAGA 762751 29 100.0 32 ............................. ATAACCGGCGGCGGTGAGCCGTCAGATGAGTG 762812 29 100.0 32 ............................. AGTTTAGACCCGAGCGAGTACGGACAGCAGGC 762873 29 100.0 32 ............................. GTTGAGTTGCAAACCACCGACCTGCCTACAGA 762934 29 100.0 33 ............................. TTCGCCGGTAGAAAGCTGATTTTCAAGCGCGAC 762996 29 100.0 32 ............................. TATCACTGGTTGTACGGCGCACCGCTGCTTGC 763057 29 100.0 32 ............................. ATTACGGCACGGGGCGATCAGGGAAACGGGTC 763118 29 100.0 32 ............................. GCGCAACAGTTCATCACCGTATGACGTGTACG 763179 29 100.0 32 ............................. CCCTGGCGCCCGGACGATGCCCGTGTCTATCA 763240 29 100.0 32 ............................. ATGAACCGATCACCAGCCTTGTCCCACGGCAA 763301 29 100.0 32 ............................. TCCTTGAGTCTTTGTGGAGATACACTAATGGA 763362 29 100.0 32 ............................. GCGATGGAGCTGTTTGGCGCGCGCTACTTTAG 763423 29 100.0 32 ............................. GGCCGATGGCAAGTGCGGATAGAGGATTTGAG 763484 29 100.0 32 ............................. AAAGGCTGGTTAGGTGGCATCAGAGCCATTAA 763545 29 100.0 32 ............................. TCCGGTAGGGGCATAGGACGTAAAGCGAACCC 763606 29 100.0 32 ............................. TGTTCAGCACAGCCTTGTTGCTTGAACTCTCG 763667 29 100.0 32 ............................. TCATCGGTAGTCATTAAATCTGCTACTCGTAT 763728 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.7 32 GCGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : GCGTCAAATTTGTCTTTCTTTAGCCAATCGTAATAACCGCTCCTCGAAGCTTTTAAAACTCGGCACATCAAGGAAATCGAGTGGTTTGCCTTCTCCGCCTCTATAAACTGATACTTCAGTTCTGCTCGTTGGCGAAGAAGGCTGCCGCCTTTTTTAATATCGCCCTTTCTTCTTGCAGCTTACGGTTTTCTTCCCGCAGCCGACGGTTTTCCTCTTCAAGCTCTGCAGAGGGTTTTCGGGCTTGCCCGTGGTTTGTTGAGTTATTCTGAAACTCTTCAGGATATAACTCCCTCTCCCATCGATAAATCATGCCGCGAGTAAGATCTAAACGACGAGCTACCTCTGTCTTGGTATAGCCCTGTTCGCGATGCATGTTAACTGCCATTGTCTTGTACTGCTGGCTATACTTTTTGGGTGACTTGCTTTTCATCTTTGAACACCTCCTCTCCAAGATTAGCGTATCTCATTGGAGGTGTCCGTTACCATTGGACCACAACACC # Right flank : GATTGATATACAGTAAACCCGCCTGGTTCTCCGGCGTTCCCTGGATTGGCGCGGTGCCAACGGACGGCTCTGCGATGTCAGCTGCCGGGTCGCGATGCTGCGACTGCACGAGCAGGGGAAGATCACCCTACCTCCATCCCGGCTGCGCAAGCGCCGTCGGCGCGCCACGTTTCCCCCGACGCCGGCAACCGACCCCCAGCCGCTTCTCAATACGCCGGTCAACATGATGCCAAAACCGACCTTTCATATCGTCCAGGGCAATGCGGCGCAATCACGGTGCTGGAATGAGTACATAGCCCGCTATCACTACCTAGGCTACACGCCATTAGACGGTCACCAGATCCGCTATAACGTCTACGCTGGAGAACAACTCGTCGCGCTGCTCGGCTTCGGAGCCAGCGCCTGGAAGCTCGCCGACCGTGAGCGGTTTATCGGCTGGAGCAGCGAGCAACGCGAGCGCAATCTATCCCTTGTGGTCAACAATACACGCTTTTTGATCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2254998-2255176 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017372.2 Halorhodospira halochloris strain DSM 1059 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 2254998 36 100.0 35 .................................... CCTGCGGGCGGCTTTCTTTACCTCCCTTCGGCACT 2255069 36 100.0 36 .................................... TTTTTGACACCGGCTAATCGTCTACGCGATAGCCCT 2255141 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 3 36 100.0 36 GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC # Left flank : GACCTTGGGTTCTCACAGTTCTACTTCATAGAGACATCCAGCGAAAAAACCATCGGCCAAGAAGTGACCAAGGCTAAGCGACACGAGGGGACGCTCCTGTAAGATTTTCTAGGTATGAAGAGTTTGGTGAAGGATTTACAAATTCCTTTACAACATATACGTTTACCTTGTGAGCCCTCCCCCCGGGCCATGCTAACGACCAATGCCGGAGTGATTCGGCAGTGGTTATGGCTATTTCGGGATGGCACGCGCGAAATTGCACGGGCCCGGCGGTAGCGTGGTCAGTGTTGAAGGTTATATGACCTACTGTCCACAGAACGGACCCTTAAAGCGCTCTAGCCTAACTTGGTTACAGACGGTATGATCCAGTATAGGTGTTGGAGTTCTTTAAAAATGAGAATGGAGTGCAGATGCCAGCGTATGTTAAGTATTCGGGCACCTCGATTTCTGTCAAACCCCCTTGTAGATATCTGTTTTGAAAGGGCTTATAGAGCCGAGGA # Right flank : CTGCGAGCAGGTATTGACCAACCAATATAGGGCTCTTTGCCCTTGACATTTGCCTGTCAACACCACTCAGCCAACTAAGTTATGCACAAGGCTCAATGCTTGCGATTTGGACCAATAATTAGCCTGTGATAAAGCGCAAGACCCACTTTGTACCCTGAATTACAGTCATAAGTCACTGATTTTAATGCCCCCACTGCCTGCCTGAACAAAAACTATCCAAACCCGCCAAATGCCCGTTGTGATTAGCCAGATAGAAACTCTCCACAAAGTTTTCCACAGCTTTTGTGGACAACTTCAGTAGCTCTCCCGCCTTCTGATCCACCCTGCTCGGGGTACTGCAACAGTTGTGTCACCAGGGGCCATGCCGCTACGCGCCAGAATTCCTTGCCGTGCTCAAGCTGCGGGCCGCGCCCGCAGCCAAGGATGTGCTCGATGCCATTGAGGTGCTGCGCGGCATGAACAGCAACAACGCCCGCAAGGTGCCCGCTGACGCGCCAACC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 4 2266356-2266886 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017372.2 Halorhodospira halochloris strain DSM 1059 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 2266356 36 100.0 35 .................................... CCTATAGTTCGTTGAAATATATCAATCGCTTCCCT 2266427 36 100.0 36 .................................... CTGGACCTTGACAGGATTTTGGTTGCCTACACTATC 2266499 36 100.0 36 .................................... GGCGTCCTTTTGGACGTAGGGCACCGCCTTCATCAC 2266571 36 100.0 35 .................................... GCGCACTCCGGGCTTATTTCGTCACGCTCGAGTTG 2266642 36 100.0 33 .................................... CCCACCAGTGCGTAAGAGTTGTCATACGCGGAT 2266711 36 100.0 33 .................................... AATTTTATGTTGAACCATTCCGTGTCCTGGTCC 2266780 36 100.0 36 .................................... AATTCCTTTCTGATAGCTGTTAACGATTCAACAGCC 2266852 35 94.4 0 ...............................-...G | ========== ====== ====== ====== ==================================== ==================================== ================== 8 36 99.3 35 GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC # Left flank : ATTCGGTGGTGATAAGCCACCCAGGCTGGCCCCGTCAAGCGCCTTATTTCAGCATCAGCCAAGAAGCAACCAAGGGCAAGCGACATGATATGACGCTCCCGTATGCTCCTTTGGTTGGGTTAGCTTGGGGAATTATTTACAAATACTTTCATGATATATACGCTTATTCTTGTGCCCTCCCCCCGGGCCATGCTAGCGACCAGTGCCGGAGTAATCCAGCAATGGTTATGGGTATGTCGGGATGGCACGCGCGAAATTGCACGTGCCCGGCGGTAGCGTGGTCAGTGTTGAAGGTTATATGACCTACTGTCCACAGAACGGACCCTTAAAGCGCTCTAGCCTGACTTGGTTACAGACGGTATGATCCAGTATAGGTGTTGGAGTTCTTTAAAAATGAGAATGGAGTGCAACTGCCAGCGTATGTTAAGTATTCGGGCACCTCGATTTCTGTCAAACCCCCTTGTAGCTATCTGTTTTGAAAGGGCTTATAGAGCCGAGGA # Right flank : GTATAACTGGCTGCACAAAATCGCTAATTCTGCAGAGCCGGAATATTGCTGTACTGGGATGTTATGCGGCGGGGTTACTTTAAAGCTCAGAACAAATAAACACGCAGATTGGGACTTAATTAAGTATCTACAAGAAGTTCAATCGAGTGATTTTTTGGATGAGTCACTTTTTCTCTACGTGAAAGCGCTCGATCCTGGCACCAGCTAATTCCATGTCATCTTCACTAAGTTCCTTACCGCGCATATCTAGAGGCAGCTCCAGCGACAAATGCCAATAGGCAGCACCGCGCTGGCAGATCATCGCAGCGATATGGACCGGTAGTGTCCCTATAACAGCATCTCCTCGCTCGACCGCTGCCCAATCCAAGTGCTCAACAAACCTGTCCACTTCTATTCCTTGACGCTCGGCCCAAGCCGCTGCTCCAGGATGACGGGAAACAAACCAAGTAGTCATAAAACCTCCGATTTCTCAATCCCTATAGAGAGTAGTTGTGCGCTAC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 2276804-2277052 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017372.2 Halorhodospira halochloris strain DSM 1059 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 2276804 37 100.0 33 ..................................... GTTTCCTGAGCGTTGGCTCCGCAGTCGCAGCAG 2276874 37 100.0 34 ..................................... CCCCGTGACATAGAACATTGCAATTGGTTGAGTA 2276945 37 100.0 34 ..................................... GATCTGTATCTTGAATGGGCACTCCCACCCGACC 2277016 37 97.3 0 ..................................A.. | ========== ====== ====== ====== ===================================== ================================== ================== 4 37 99.3 34 AGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC # Left flank : AACGATCCACGGGGCAGGGCTATGAAGCAAGCTCGGCAGATCTATGGCGAACTGACGGGCGAATAAGATCAAACAACAAAGAGAGCAGCAATCAAAGAACCAGGAGCTTTAGCAGCGATTTGGACTGCCCTGTTGGAATTAGGCAAGCCTGGTTTATCTCGCGCTATCCGGGGACGGTCGAGTAGGCCCGCAGCCAAAACTTGGAGTTTGACTCAATCCCAAGCAGGTGCATTTCGGTGATGCGGCATGCGCGAGTGTGCACGGATCCGCGAAGGTAGCATGTTCAATGTGACAGGCCCTACTGCTAGCCCTGGGCCCGGAACCGCAAAGCGCTCACTGGCCTTGCTTGGTTATAACCGGTATGATCGTGAAGATAGTCAGGGGGTCTTTAAAAATGAGAATAGAGTGCAGATGCCAGCTTATGTTAAGTATTCGGGCACCTCAATTTCTGTCAAACCCCCTTGTAGATATCTGTTTTGAAAGGGGTTATAGAGCCGAGG # Right flank : CAGCGACAGGTGGTGCTAATAACATTTTTGTCCGGACTGAATCCGGCTCGCCGTAAGCACTTAATATTGACAGATTAAATACATCTGCAAGCTGCCGATACCTTAAAATCTCAGAATTTTTTTTCAAGCAAAAATGCTTAAATCTAAGCATCATATAAAATAAATAAACGATGATTCCCTTATTGCCATTGCGTTTGCATTACCGTGCTGAGCAACAGGTTAAGTTGCCATTTTTTCCGGGTTCTATCTGGCGTAGCGCCTTAGGTTACCGACTGCGCCGTGCTAGCTGTGTGACAGGAGCGGAGCGTTGTGATGGATGTTTAGCCGCCACCCATTGTGCTTATGGCCAGCTGTTTGAAACACCAACGCAGGCCGTTACTGCGAGGACCCACCCCTACAGCGAAGAAGTTAGTGCGGAAAAATTACTTAAAAACTACCCTAAAGCTCCCCACCCTTTTGTTCTCTCACCGGTAAGCCCAGGGGGTGAATATTCTGCCGGG # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 6 2285423-2285815 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017372.2 Halorhodospira halochloris strain DSM 1059 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2285423 36 100.0 35 .................................... CTGTTCTGTTCCCCTTGGTTGAGTATCATTCTGCT 2285494 36 100.0 38 .................................... GTTTCGATCAGCGGGTCATCAAAACCCTTCCGGCGAAT 2285568 36 100.0 35 .................................... CGGCTTCCGTCTGAGCGACTTCCCGCTCCATCTCC 2285639 36 100.0 34 .................................... GCCATATCATCGTCAGTATCCTCCCTGAAGCCTA 2285709 36 100.0 35 .................................... TCCAACTCTTTGAGGACCTTGCTTGGGTTGAATTT 2285780 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 100.0 36 GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC # Left flank : ATGCAAAGCTTCACCGCCGTTGGCAAAAGCGGGCAGCAAATACTATAGCATCCCACTGCTTGCACTTAGGCAAGTCACTCAATCCGGGTAATAGTGAATATGACTGAGTTTGAGTTGCTTGTGCGCCAACAAGCTAGATCCAAAAAGATACCGATGGCGGAGGTTGCAAGGCGTTCTCGATTGAGCCGTCAATCCCTTTACAATATTTGTAACTGCACTAGCCATCCGAAGTTGCAAACATTCGTAGACTTAGCTCACGCCCTAGACATTAGCCCTATGGTCTTGCTCGAAGCTTACTTGCAAAGCGCTGACAAGGAAGAGCAACCATAAAGGTATGGCGATTATAGGTTTTTTGTTATAGCATCACTTACGGATGGGGAAGGATCTTTAAAAATGAGAATAGAGTGCAGATGCCAGCGTATGTTAAGTATTCGGGCACCTCGATTTCTGTCAAACCCCCTTGTAGCTATCTGTTTTGAAAGGGCTTATAGAGCCGAGGA # Right flank : CTGCGAGCAGGTATTGACCAACCAATATAGGGCTCTTTGCCCTTGACATTTGCCTGTCAACACCACTCAGCCAACTAAGTTATGCACAAGGCTCAATGCTTGCGATTTGGACCAATAATCAGCCTGTGATAAAGCGCAAGACCCACTTTGTATCCTGAATTACAGTCATAAGCCACTGATTTTAATGTCCCCACTGCCTGCCTGAACAAAAACTATCCAAACCCGCCAAATGCCCGTTCTTATTAGGCAGATGGAAAATCTCCACAAAGTTTTCCACAGCTTTTGTGGACAACTTCGGTAGCTCTCCCGCCTTCTGATCCACCTACTCTAAGGCCGCGCCCACCCTTAGGCTCTTCAATTGACATGAGCACTTGAGCATCTCCTTTACCGCTCAGCCTCCGCTCTCCCCTCCCCTCTCGCTTGCCCCGTTCACCCCATCTATCTACCATGTCTGATTACAATCCACCTTCCCGTTAGCAGGCATCAATGGCTCATCAAGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //