Array 1 50874-51634 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHZJ01000079.1 Gluconobacter japonicus strain LMG 1417 LMG1417_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50874 29 100.0 32 ............................. CCAATGAGCAATGCACACATGACGATCCGGCT 50935 29 100.0 32 ............................. ACCTTGACCGGAATGTGGGGCGTGCTGTCACT 50996 29 100.0 32 ............................. ACGGATTTTATTTTCCGTTCGCTTGTCTCCCC 51057 29 100.0 32 ............................. GTGAAGTCAGGCTCACCATCCTTGCGCTTGAT 51118 29 100.0 32 ............................. GGCTTCCCACTCAGAGAGAAACTTATCCTTGA 51179 29 100.0 32 ............................. AACAGCGCGGCAATGGCGGCGCTTGATAAATC 51240 29 100.0 32 ............................. CCAGATTTCAAACCTGCGGAATGTCGGGAATG 51301 29 100.0 32 ............................. CGCTCCGCGATTATGTCGATGGGCGGTTTGTT 51362 29 100.0 32 ............................. CTGTCCACTTGGTCGTCCCGGTTCCCCGGCTC 51423 29 100.0 32 ............................. GCCTTCACGGGCTCGACAGCAGGGTATCAGGC 51484 29 100.0 32 ............................. TACCAGCCGATTTTAATTTATCCACGATTGGG 51545 29 96.6 32 ..............C.............. ACGGCGACTGACGATCTGGGCCGGTCCTACGT 51606 29 86.2 0 ..............C...A....A..G.. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.7 32 GTGTTCCCCGCACATGCGGGGATGAACCG # Left flank : TGATCGAAGACGTTCTCTCCGCAGGCGGCCTCTCCCCTCCCGAAGCACCGGAAGAAGCCATGCCCGTGGCCTTTGAAGACCCGGAAGGATTGGCCGATGCTGGTCATCGTGGTTGAAAATGCCCCACCACGCCTGCGAGGAAGGCTTGCCGTCTGGCTGCTGGAAATTCGTGCAGGCATCTATGTCGGGACTTATGGCAGAAAAGTTCGGGAAATGATCTGGCAACAGGTCTGCGCCTATATCGACAGCGGCAATGCCGTCATGGCCTGGGCCGCCCCGAACGACGCTGGATTTGAGTTCGATACCTGCGGTGCAAACAGACGTTGCCCCGTAGATCTCGATGGATTTCGCCTGGTCGAATTCGGCCCCGAAGCAGCCCTCCCCCTCCTACCCGGCCCTCTTAATTCTCCCAACCGAAACAGGCGTTAAAAACCCTTTGAAAATCGGTAGCTTTTTGAAGTGGAAAAATTCCCTTCTTAATCATAAACTTGCACACAAGA # Right flank : GTCAGAACCAGATCTGTAATACCTGCACAAACCTTACTGCCCGTCCCACATACCCTTGCAGACAAGGAGACATCCATGAGCAAACTCACAAAAGAAGAACGGGACAGCCTGCCTGACAATGAATTCGGGCTCCCTGAAAAACGGGCCTATCCTGTCGATACCAAGGCACGAGCACGCAATGCGAAAGCCCGCGCTACGCAGGAGCTAGAACGGGGGCTTCTCACACCGGAAGAGCGGGATGAAATTGACCGTGCCGCAGATCGAAAACTGAACGAAGACTAGCCAGACTCAAAAACGGCCCCGGATCACTCCGAGGCCGTCTTCTCTCAACACCTAATCAGTTCGCCTGCGCCGCCCGCAGCGGAGCATCAGCAGGAACATCCTTGAGCGGAATTCCCTGATACTTGCCCGTCAGGGTCTTCAGGAACGCCACGATGTCTGCAACATCCTGGTCGGTAATATCATGATCCGGCGTTTCGTAACGTGCCATGGCACGCACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 122897-122624 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHZJ01000084.1 Gluconobacter japonicus strain LMG 1417 LMG1417_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 122896 29 96.6 32 ............................A GACATGCTGCACGGAACAGAGTCACCGGAAAC 122835 29 100.0 32 ............................. ATCGGTCATGTTTCAGCCTGAGATAGTTTCTG 122774 29 100.0 32 ............................. GTTTTTCGACTTCTTCAAGGGCGTCGTGAACG 122713 29 100.0 32 ............................. CAATGACAAATCCGTACAGCATTGGCCTGAAC 122652 29 79.3 0 ..........TC..T...........ATT | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : GTAACCGTTCCCGGTTATACCGGAGCGCTGCTTCCTGCAGGACGCGGATCATGGGAACCATGTGGTGACCCATGTCCCTGATGCCTGCAAGTTCCCGATTGCTGGCGGAAAGCAGGGCTGCCACCGAACCAAAGCGTTCCAGAAGTGCTGGAACGAGGGTGTCCACTTTTTCTTTACGGCCCGTAAAAATCTGAACGATCAGGCGTAACAGAGTGTCATCGTCCAGGCGCCGTCCCCGTCCGCTCAGAAGGGCAACAGGGGGCGGAATATGCTCGTTGTTTGTCGGCTGTGGGTTGATGGAAAATGGTACGGTTTGGAAAAGGATTTTTCCTGAGTATTCAGCAAACCCATCATCAGAGGCCGGAGCATTAGTCATTTGTTTTTCTGGCACTGTAAGGCGAAGAAGATCAAGGTAGTATCGGCACTCAAAAAAGCTTAAAAAATCGGTAGATTTTTCGAGGGCTGTTTTTCCTTTGGAAAACAGCTATCTAACAGGAAGA # Right flank : TACAGGAGGCCTTCCTGTCTGAGGCTGCTGAGAGTTGCTGTTTTGGTGCTGATAAGGACATCATGCAGAACAATGGAGAGTGGCCTGAGAGCGTTTTCCAATGTTCGTGCGGCTGTTGAGAAGGCTGGTGCTCTCAGGGCGGGCTGGACGTGTACGCCGATGATGGCTGTAGCGTGCAGAGCCAGGGCGCGAATGGCGATGGCGCGGTTCAGGAAAGTAATATCTTCCTCTTCGGGGGCAGCTTCATCAGCGAGGAGCCGGTTGCGGTTATCCAGATAGAGAACGCGAAGCTGTCCGGCGACTGCGCTTTTCAGTGCTGTTTCAAGGTACTCTGTCAGTTGGGGCCAGTTTCCCAGAATGGGGCGTTCACGGTGTTCCGCTGAAGCGAGGCGTTCTGCGGCGACTGATGGCAGACGAAGGGCTCGGATGGTATCGTCGTTCAGGCCGGCATTTCGCAGATCCCGCGTTGGCGCACGGAAGACGTTGATGAGACTTCCGAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21784-21511 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHZJ01000083.1 Gluconobacter japonicus strain LMG 1417 LMG1417_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21783 29 100.0 32 ............................. ACGTTCTGGTGGCTCCCGTCACGGAACCTCAC 21722 29 100.0 32 ............................. GCTACACACACCCACATGAGGTAGTGGTCATA 21661 29 100.0 32 ............................. AGACCTGGCATGAGCGGGCAGACGGATACGGA 21600 29 79.3 32 .......T...A.AC...A.......T.. TAAGGGTTGCCCGTGGCGATAATCCGCCAGAT 21539 29 75.9 0 ...........A..C........ACT.TC | ========== ====== ====== ====== ============================= ================================ ================== 5 29 91.0 32 GTGTTCCCCGCGTGAGCGGGGATGAACCG # Left flank : CGGGAACTGCGCGTTCCGTTCCGGACGGCCCATCACGTCACGGGGCGTCTCGTCGGTCTGGCGGAGCAGCGTGGCTGTGATCTGGCGGACCTGTCTCTTGAAGACATGCAGGCCGTGGAGCCGGGCATCAACGCCGGCATTTTCGATGTTCTGACAGTCGAATCCTCTCTGGCGTCCCGCACCAGTCAGGGCGGAACCGCTCCATTCAACGTGCGTCAGCAGGCTCAGGTCTGGCTGGAAAAACTTGGAGACGCTGCATGAAACGTTTTCTGCTTGTTGGCTTGACCCTCGTAGCACTTGGCACTGGCCTGAGCGCGTGCGGGAAAAAGGGCGCCCCACACGCTCCCGGCCCGGCTTCAGACATCACCTATCCCCGCAGCTATCCGCCTGAATAATTGACGTTTGCAGGGATCTGTGAAGGCGTAAAAAACAGCCTGTAAAAATCGGTAGATTTTCAGGAATGGAAATTCCTTTTCTGTATCAGTATGTTGTCAGGAAGA # Right flank : CGCTTGAAACGCTACGTCGCTTTTTCAATCCCAGACATAACAGTGTTATGTCCGTTTCCGGCGAGCGGCTATGATCAGCTATCCCCTAGAGCTTTGACCACCAGTGGGTGCTGCAGCACATTTTCTGCAGACCAACCCAGCGAGCGGAGGACACGCACCCCCTCTGCGCCGTCACGTTTGGAGAGCTTTTTTCCCTCCTCATCCAGAATGAGGGCATGGTGCCTGTAATCAGGTTCAGGCCATTTCATCAGAGCCTGAAGCACACGATGAACGGATGTGGCAGCGTAAAGGTCCTGTCCTCTTGTGACGCAGGTTACGCCTTGTAAGGCGTCATCATGGGTCACGCACAGATGGTAAGACACACCTGTGTCTCTGCGCCCCAGAACGATATCGCCAAATTCTTCAGCGCGCCCCGCAATCCGTCCCTGCCCGACTTCATACCAGGACGGCACACCGTGGATTTCATTCAGGGCCCGCTCCATGTCGAGCCGCCAAACCGG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //