Array 1 18200-16951 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVOM01000058.1 Escherichia coli strain swine62 swine62_contig_67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18199 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 18138 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 18077 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 18016 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 17955 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 17894 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 17833 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 17772 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 17711 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 17650 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 17589 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 17528 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 17467 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 17406 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 17345 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 17284 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 17223 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 17162 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 17101 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 17040 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 16979 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 127650-126829 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVOM01000064.1 Escherichia coli strain swine62 swine62_contig_76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127649 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 127588 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 127527 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 127466 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 127405 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 127344 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 127283 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 127222 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 127161 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 127101 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 127040 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 126979 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 126918 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 126857 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //