Array 1 1535365-1537256 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045485.1 Enterobacter cloacae strain 88701 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1535365 28 100.0 32 ............................ AGTGGCGCACTGACTCCGTTTAAAGGGCTGTT 1535425 28 100.0 33 ............................ CACTGAGCGAGCAATTGCGCTTCAGGCAATGAT 1535486 28 100.0 32 ............................ TAAATCTCCACCAACAGCCATTGTTTTATTAA 1535546 28 100.0 32 ............................ TTTAGATAAATATACTGGATGTATGTTAATTG 1535606 28 100.0 32 ............................ AGGTACTTTTCAGCGATATCCGCCAGGGCTGG 1535666 28 100.0 32 ............................ AACATCACGCGAAAGCGCGGCCAGCGTTTTAC 1535726 28 100.0 32 ............................ GCAGATGCGTTCCCTGTAAGGTTGAAATACTC 1535786 28 100.0 32 ............................ GCGCGACGGATGCCAGCGGCCAGCGCCAGAAA 1535846 28 100.0 32 ............................ TGGCGAACCACGGCGTTATTGAAGGTGGAAAA 1535906 28 100.0 32 ............................ ACCAATCATCTGGCGCAGATGAAAACTCATGC 1535966 28 100.0 32 ............................ ACGAAGAGATCCTTCACTACTTCGAAGCCCAC 1536026 28 100.0 32 ............................ AAATTATGAAGATTTTCACCTCTTGGAGCTGT 1536086 28 100.0 32 ............................ AGTCGTAAGCCAGTAGATTGATGCCCCTGTTT 1536146 28 100.0 32 ............................ TACGCGCAGCAGCAGACCGAAACAGACAACGA 1536206 28 100.0 32 ............................ ACCGATCACGCTGGCCATTTTTTCAAATGACG 1536266 28 100.0 32 ............................ TGCGCAAAGCCTATCCCGAAATCACGTTCAAA 1536326 28 100.0 32 ............................ GCTGACCCCATCTCTTGCAGCACGAGCAACAT 1536386 28 100.0 33 ............................ ATTCTTCCTGCTTTGGAAACAGCAGAAATGGAA 1536447 28 100.0 32 ............................ ACACAGGCGCCGCAATTACCGCATAAATACAT 1536507 28 100.0 32 ............................ CACCACGGCATAAGCCTCTGGATACTTACTTT 1536567 28 100.0 33 ............................ TTTCTAACTGCACCTCAAACATTCCACACAATT 1536628 28 100.0 32 ............................ TGGGCGGAGGAGTCTGCGGGGCGCGGGGAAAG 1536688 28 100.0 32 ............................ GGTAGCGTATCTCTCCCTTTGAAGTCACTCTC 1536748 28 100.0 32 ............................ TGGCAGATATGGGGCAGACCTTTGCCCGGTGG 1536808 28 100.0 32 ............................ TGACCAACCTGACCACCGGTGACGCAGCAATT 1536868 28 100.0 32 ............................ CACATTTGTTGATGAATTTCCCCGGTGGACGG 1536928 28 100.0 32 ............................ ATCACCGTTGAGGTGTCGATGGTCAGCTCGAC 1536988 28 100.0 32 ............................ TTGAGCGCGATTACTGTTCTGGTCTGCTGTCA 1537048 28 100.0 32 ............................ GCGCAGCGCTTGTCCGCCGCTCAGGCTACGTT 1537108 28 100.0 32 ............................ TGGGGGATATCGACCACGCCTCCTACGGGACT 1537168 28 96.4 32 ....................T....... TGAAGCGATTTGAGGTTGATGAAGAAAAGCGT 1537228 28 89.3 0 .....................A.GC... | C [1537254] ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTCACGGTTTACATAAGCTGTTTGGTGGCGTGGGATTTATCAGCGGCATGCTGGTAGAGAAAGGGCTACCGGGATTTATTGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCACCGATCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCATGGCTGATGGTGGGAATGGGCGAAACGTTCGCGCTCGATAAGGTTGGGGCATGGGCGATTGAAAGCCTGGTTTACTTCTTTGTTGGCTCGCTGGCGGTGGCGTGTTTAGGGGCAGGGCGGTTTGCGTTAGGGAAAGCGCCTGCGTGGCAATAAAGCTGGGTACTGAAAATGTAAGGGTCTCTGGACCCTTTTTTATTGGTGGTTTTTAAGTGTTTGATTTTATTAAGCGGAATTATTTGTGATGAAAAAAGGGTTTAAGGGGTATTTTTTAGGGGAATTCTTTATCTGACAAGGTGATAGGTGTAGATTGTTCCA # Right flank : ACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTAGCGCTTACCGGGCCTACGAGCGAACGTTTATCGCTTATGCGAGCACCATATCCCCCTGCGGGTGACACGAACACGCCAGCACGTAACCCTCGGCAATTTCTGCGTCGGTCAGCGTCATGGTGCTGGTGACGGTGTACTCACCGGAAACCACTTTGGTCTTGCAGCATCCGCATACCCCAGCGCGACAGGCTGCCGCTACCGGCACGTTGTTGCTTTCCAGCGCTTCAAGCAGCGTGGTGCCCACGCGGCCAAAGAAGGTCTGCGCCGGTTGTAGCTTCGTGAACTTCATCCCGCTGGTCGCCGCTGCCGCCACGGGCGTGAAGAACTGCTCTTTGAAGAAGCGGGTCACGCCCAGCGCTTTCACTTCTTTCTCCACACTCTCCATGTACGGCGCCGGGCCACAGGTCATCACGGTACGGTTCGCAATGTCCGGCACGCTTTGCAGTAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1552249-1552638 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045485.1 Enterobacter cloacae strain 88701 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1552249 28 100.0 32 ............................ CAATTGAAGTATTAAATAAATGTAATATTAAA 1552309 28 100.0 32 ............................ CAATTGAAGTATTAAATAAATGTAATATTAAA 1552369 28 100.0 33 ............................ CATTAAATTAAAAGTAACTATATCTACTATAGA 1552430 28 100.0 32 ............................ TATAGAAATTGGGGGTTTCGAGATTGGTTATT 1552490 28 100.0 32 ............................ AGCGGGAATGTGCCGGGTTCAACTGGACGCCA 1552550 28 100.0 33 ............................ TTTGCCGAAACCTCAGCACCGGAACAGCAGAAT 1552611 28 92.9 0 .......................T.T.. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCCCACAAACGCAGGCTGTTTGCCGCTGTCTCGGAGCTTATCTGGAAGAGGTAAAATCCGGCCTCACAGAATCCATGCGTGATTTTCAGGTGGTGGAACTTGAGGACGAAGCGGAACAACCGCGACAAAAAGAGTGGCTACTGGAAGATACCGAAACGAAATGTGACTACTGCCGGGCGTTAAACCACGTACTGCTGGTATCGCATTTTGATCGCGATATGCTGCCGCATCTTACAGGACTGCTCCATGACATCACGCATTCTATGGCCGCAGATGTTGTTGCGCCTCAACGTGCAGAAACGGTAGTTCACATTCTTTCCTGAATGTAGTTTGTGGCGTCCGGGGTAGGCCCCTGACGCCACTGGCTTAACCCTTTTTTTTGATGATAATGTAAGGTATTGATTTATATGATGCGAATTTACGTTTCAGAAAAAAGGGTTTCATGCGCGAAGATTGATTATTTTCTTTTCTAACAATAAGATGGCTTAGTTTCCTTTCA # Right flank : AGCCCCTCTGGGCTTTAATGCCGTGGAAATGGCGTTACTGTCCCACAGACAGTACAAGTAAACCCTTCCCTCACAGATATTCACCTCGTCTATTTAAAAACGAAATCCCATCATCCACATGCTTTCCATTTTTAGATTAAATAAAAATCCCATTCAGGGGTTAATTATATTTCCGTGTATATATTTTTTGTAAAAAAATACTTTTAAAAAGGATGTGTTTTTTGTTTAATTATCAAAGAAATTTCCATTCATTTGATATATATCACATTTGTATTTCTCTCATCTCGATAACATACCCGAATTCAATACCTTGAAATTAAAGCCGTTTCTATGCTTGCAAACAGCGTTACCCCAACAGATTTAAAAACCATCCTGCATTCAAAACGGGCCAACATTTATTACCTGGAGAAATGCCGCATCCAGGTAAATGGTGGACGCGTTGAATATGTCACCCAGGAAGGAAAAGAGTCGTTTTACTGGAATATTCCCATCGCGAATAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1562556-1563423 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045485.1 Enterobacter cloacae strain 88701 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1562556 28 96.4 32 ...................A........ GGACAAATTAAAGACCTCTGTGACGGCGCAGG 1562616 28 100.0 32 ............................ AGAATGAGCCGTAGTTACCATAAGCAATGCGG 1562676 28 100.0 32 ............................ GCAACGCGTGCTTATCGCTCACCGGGTGTTAA 1562736 28 100.0 32 ............................ TTGTCGCTGTGATGTACATGCTGAAATCTTTC 1562796 28 100.0 32 ............................ CGACGCAAAAGGTAACGTTACAGTCAGCACGA 1562856 28 92.9 32 AC.......................... TTTAAGCCGCTGCGCCTTTGTGACCTCTTTTT 1562916 28 100.0 32 ............................ AGCCCGCGCGGCATGACTGACTGAAGGGCGTA 1562976 28 96.4 32 ........A................... TGACGAAATTGAATGGCCTGAATCGCCGTTAA 1563036 28 100.0 32 ............................ TTGTCATGTGATTATTAACAACCGTTTCAAAC 1563096 28 100.0 32 ............................ TATATGCAGCACCTCCAGGGTTACTGCCTTTG 1563156 28 100.0 32 ............................ AGGAGGATGTGCTCTTACGCAGGATGGATGCA 1563216 28 100.0 32 ............................ GCTGACGCCGGTGTTTGATTCCATCATCGAGA 1563276 28 100.0 32 ............................ TTTAATATTTCGAGTACACACTGTTTTCGCTG 1563336 28 89.3 31 ...........C...C......C..... ATAGAAAATAAGGCCTAACAGTCATCGCACC C [1563361] 1563396 28 75.0 0 ........T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================ ================== 15 28 96.7 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGGCTACGCGTTCGCTCTCATCCGGCGTCAGCGTCCTGCCTGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTAATCCCGGTAACGCGCAAAATGTCCGCTTTCGACATGGCCGTCCATTCATGAATATTGTCGAGCACGCTGACGGGCAATCCCTGGTTGAGAAATTCTATCAGCCGCATACCTCTGTTCGCGGGTAAACCGGCGTAGCGCCAAAGTGCGTTATCAGCAGGTTTCTTGGCGGGGATCCAGGTTCTCATGTTACCTCCTGATTAATGTCATTTGTCATGGTTAAGTATAGCCATTTGTCAGATGGAGTGGAATGGGGATTTTTTGTGCTGGGTGGTTTGTGAGAAGAAGATGTTTTAACCCTAATTTTTAACGTTTGTGTAATTCATTGATTTTAAATAAGTGTTTTTGGTGGATAAAAAAGAGGGTCAGAGAAGGTTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGAGATATTATTTCA # Right flank : GCTGAAACGAACGACTAAATAACTGTTCAAATAATCAACAGCATCACTAAAAAATAAGGCCGGGAATATCCCGACCTTTTAAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATATAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGAAACATGGTATTAGGTAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTAAAACGCAGCAAAACAATTTCAGCGTATTGCCCAAGCGTCACGGTACAACCGAACGGAAAGCGCATTCGTAAAGGGGAGACGACA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //