Array 1 112615-113315 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOMD01000105.1 Escherichia coli strain SC381 NODE_8_length_237452_cov_496.513_ID_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 112615 29 100.0 32 ............................. TAAAGATGCGCTGGCAACTATCCTGAAAAAAC 112676 29 100.0 32 ............................. TGCTGGACTGGTCAGAAATTGAGTTTGAAGCG 112737 29 100.0 32 ............................. AAAACCAACCAATTGCGGTTGGTTTTTTTATG 112798 29 100.0 32 ............................. AATTACATACTTTTTTAATCAAGGGCATGAAC 112859 29 100.0 33 ............................. TCGGGCGCATTGGGGTATATGAAGACAGCAAGC 112921 29 100.0 32 ............................. GTGTATATCCGAGAAGCAACCAGTTCTGGATT 112982 29 100.0 32 ............................. GTCGGATAACTCTTCATCGGCGCGAATCATGC 113043 29 100.0 32 ............................. AGCGAGGGGCGATTCCGGCAGGGCGTGCACAT 113104 29 100.0 32 ............................. GGCGCGGCGAACTCCAGCACAACCAGCCTGCG 113165 29 100.0 32 ............................. GATAATGTTCATCATATAAGAGAACGTCAGGT 113226 29 100.0 32 ............................. CAATGGGGGCAACGGTTCCCCTGGTTTTGTCA 113287 29 93.1 0 ........................G...A | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCTCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGATTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATTATTAATTAATAATAGATTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAATATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTCTTTAGGATAATAGATTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGTCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 138864-140966 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOMD01000105.1 Escherichia coli strain SC381 NODE_8_length_237452_cov_496.513_ID_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 138864 29 100.0 32 ............................. GCCGCCGCATGGCAAAACAAACATCGGGGTAC 138925 29 100.0 32 ............................. CAAACAAGCCCCGCGCCGCGTTGGCTGAATAA 138986 29 100.0 33 ............................. CGGTGAATTACAGCCTCCAGGGGGAAAATGGAC 139048 29 100.0 32 ............................. TGATCCGCTATTGATTCAATCGCTTCTGACGC 139109 29 100.0 32 ............................. CCGCCAATAATGCGCCCTTCCTCTATTTTCAC 139170 29 100.0 32 ............................. CGCGGAAAAATATTGGCATTGACGGCGATATT 139231 29 100.0 32 ............................. GACCAGTACATCACTTGAGGCAAATACTCAGT 139292 29 100.0 32 ............................. CCGCAGCACCAGCCGCGACGGCAGCCACCCAC 139353 29 96.6 32 ............................C AGATAGGTCAGAGCGCGCAAGATTGGGCGAAA 139414 29 100.0 32 ............................. CAGATATTATAATCTTGCTCCCGTATATAGCT 139475 29 100.0 32 ............................. CGAAGCTCCTTCCGTTGATTACCAAAACGTTG 139536 29 100.0 32 ............................. TGTCGAGCAACTACATGTTTGGTGTTGATTGT 139597 29 100.0 32 ............................. CCGGGCCGCTGAACGTTTTCCCCGTCGCACCG 139658 29 100.0 32 ............................. AAGGCGGCAGAAATAAAGTAATAAACGGATTG 139719 29 100.0 32 ............................. GTGGACCGGAGGGCGACAGGCAAACCTGTTTT 139780 29 100.0 32 ............................. CATCTGCACCAGCTCGGCACTGATTTGATCAT 139841 29 100.0 32 ............................. TATTCCCCGAATGCTGGTCTGGCTGCTGATAA 139902 29 100.0 32 ............................. CGCCGCGACAAATAATCTCAGCACACCTAAAA 139963 29 100.0 32 ............................. CGAAATCGCACGCGCTTCCCGCATGGGGGAAA 140024 29 100.0 32 ............................. GGCTGCATATGAGCACGAGACACCCAGTAATT 140085 29 100.0 32 ............................. GGCTGCGTATGAGCACTAGACACCCGGTAATT 140146 29 100.0 32 ............................. GCCATTGACCAGCGTTTAAAATCCTCCCGATC 140207 29 100.0 32 ............................. GCTATTACATGTGTGATTTATTACATCTGTAA 140268 29 100.0 32 ............................. TTGACGCCAGCGGCGACCCTCGTCACGGCTTA 140329 29 100.0 32 ............................. CAGTAAATAACGCATTTGATGTTTGTAGTATT 140390 29 100.0 32 ............................. TGATGAAAACCATTACCAAAGAACGTCTACAG 140451 29 96.6 32 .....T....................... GTCGTAGGTGATGAAAGAAAAGAATGATTTAT 140512 29 100.0 32 ............................. TAAACTATTCAACTTCATCTCATCTAAAATCT 140573 29 100.0 32 ............................. GGTCAGTGGTCTGTTCATGATGTACTCCATGT 140634 29 100.0 32 ............................. CCGTGGGCTAAACGATTGACGCGGCCTGACGG 140695 29 96.6 32 ............................T TGCAAATCGGTGTTATCGTCGAGCGTCCGCTC 140756 29 100.0 32 ............................. ACAAAATAGAGGACTTTGGTGAATATGCGGTA 140817 29 96.6 31 ............C................ TCAGCATTTGCTGGGTACGGCGCGGATATTG 140877 29 96.6 32 ............C................ AGAGAAAACGGCCTACTCGTAGTTCCCACACG 140938 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.5 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCTATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGAGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //