Array 1 159069-158245 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIWT01000002.1 Kitasatospora viridis strain DSM 44826 Ga0264275_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 159068 29 100.0 32 ............................. GACCCGATGAACAGCAATCCGACGTTCACAAC 159007 29 100.0 32 ............................. TGCTTGTCCCAGGCGTCCTGCTTCGGGGTGAC 158946 29 100.0 32 ............................. TCGCTGACCTGGAGGCATGTGAGGCCGGAATT 158885 29 100.0 32 ............................. ATCTCCGTGAGTGACGAGGCGCGGCACGTGCT 158824 29 100.0 32 ............................. TCCCGTGGTTTTCCAGGCGGTTCGGCACCCGA 158763 29 100.0 32 ............................. CCGGCCGGCAACCCCCTGGCGGCAGCAGGCGG 158702 29 96.6 32 ............................G TTCCTGGTCGGGATCGTCTACCTCAGCATCCT 158641 29 96.6 32 ........................A.... ACCGCGGCGCGGCCGGGGCGGTGGGTCGTGAG 158580 29 96.6 32 ........................A.... CCTCCTCACGCCAGCTTGCCCAAAGGCTTGCC 158519 29 93.1 32 ..............A.........A.... GACCAGCAGTCGGACCTGTACCGGACGCGGGT 158458 29 89.7 31 ..............T.........TC... TCGCAGTCGCGCTCCTGGTCCTTGGTGGCGG GT [158441] 158395 28 89.7 32 ....-......C.T............... GGGGTCTTTCCGTTGCCCTTGGGCACCTCGAT 158335 29 93.1 33 ..A.....................A.... TGGTCCCGGGTCTGGACGATCGACCTCAATTCG 158273 29 93.1 0 ......G........A............. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 96.3 32 CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Left flank : CGATAGTGCCCGTCGTGACGTGGCAGCGGTGTCGACGGTGCCGGGGTCAGTGGGCATGGTGTCGACGGGGTCAGAGTGTGGCCATCGTCGGTGGCGCGGATGGTGGTGAGGGTGGAGTTGCCGGCGTGAGGGACGTAGAGCAGGTCGCAGACCCGGGTGACCCGGCAGGAGGCGCTCTGGCCGGTAGCGGCAAGTGGCTGCTGACTGGCGCTGCCGTGGTGGGACTCTCCTTGGAGAAATACTCGTCAACCAGGAATCCGACTGCGTGGAGCCGCCGGAACTAACTACGCCTCAAGTCGGCACAAGTGACCCCGTGTCAACCACGACGGCATAACCTTGATCCGCCGCCCCGCCGACCGAACCACCTTGCAAGGGCTTGCACCATTGCATCCAGGCAGCGTGGCTTGGGAGGATATGACGTGGTTTCGACAGAGATGACCAAATCAATGGAAGTACTCCCCAGAGCGCCGTTCACCTGACAGACCACCAGGTCAACAACT # Right flank : TCCGGCGGCAGCCTCCGCGACGCCGGAAACCGACGGCATGGTTCGAGTCGTGGGCCTGAGAGCGGAACTGCTGCCCCGTCGGTGAGCCAGCAGCGCCTGGACAACCTCTGCGGTGAGACCGTACAGATCGCCGACCTGGTGTTCTCCGGATCCGAAAACGCGGATGAAGCGGTCGAGGACGTCATCGAGTACGTAGGTGGCCGTGACCTTGCCGAGTTCGCATTGCAAGCCGCCCGACGGGCTCGCCCCCCGGGATCTCGGGCGTCACCGTCGGCGAGCTCGTCGAAATCGTCCGGAGGCTCCTCGCCGGAGACCCGGAGAACGACTACTACCTGCGGCTGCTCGCTGCCAATGTGCCGCATCCGAGGGTCAGCGACCTGATCTTCCATCCCCCAACCGCACTTCGGGACGCCTCAGCCGAGCAGCTCGTCGAAGAAGCCCTCCGCTACCGGCCGATCGCCCTGTAGCCGGCGCCGAACCCAAACCCGGGCAACAGTCCC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 162228-162684 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIWT01000002.1 Kitasatospora viridis strain DSM 44826 Ga0264275_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 162228 29 96.6 32 .........C................... GCGATCACCTTGCGGTTGGCGTACAGGGCGCC 162289 29 82.8 32 .........C....T.A.A.A........ TTGCCCGTGCGGTACGGGATGCGGGCGCCCTT 162350 29 93.1 33 ....C....C................... TGGACCGGCCGGGCGGTGCCGTGACGGTGGCCC 162412 29 93.1 32 .........C................T.. ACGGCCGCCGAGGAGGTCGCCGCCCGCGAGCG 162473 29 100.0 32 ............................. CGGCGGGACAGCTCCTCGGGGGTGCCGATCTC 162534 29 100.0 32 ............................. ACCCCGAGCACGATGATCACGATCCCGGTCTC 162595 29 100.0 32 ............................. CGGTCGTAGCGCTTGTAGCGGCCGAAGGGCAC 162656 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 95.7 32 GGGATCAACTCCGCGGGTGCGGGGAGCAG # Left flank : TGAAGGAGCTGTACGTCCGGCAGAACGCGCGGCGGCGCGGCGTTGCCCGAGCCCTGATGTCCGCCGTACATGACGAAGCGCGTGCGGTCGGCGCCGCAAGGGTCGAGTGGACGGCCGACCGGGACAACCCGCCCGCGCTGGAGCTGTACGAGGCGCTCGGCGTGGAGCCGCACCAGGGGAAGGTCTTCTACCGGTCGGTCCTCTGACCCCGAAGCCCCGCCCACTTGTGACTGGGCGGGGTAGTTGTCACCAGGCGGGCTCTGCGGCCTGCGGCACCGCAGCGGTCTCGGCGGGCCAGGGGGCAGTGGCGGGCCCTCGGCCTACGGCCGCCCCGGCTCTGGTCGGAGGGCACCTGCGCCTCCAACTCCTCCCGGACTTGGGCACGAACGCCAAGCGCATGGGGTGGTACTTCGAGTCGACCTTCCCGCCCCGAACACGGCATGGGCTGCTTGCCGGAGCCGGGCGGCGCCGCCATGTCGGGCGCCTTGTTGGGGGTGGTC # Right flank : GAGTTGCTGACCTGGTGGTTTGTCAGGCGAGCGGCGCTCTGGAGGGTACTGTCATTGATTTGGTCACCTCTGTCGAAATCACGTCATATCCTCCCAAATCACGCTGCCTGGACGCGATGGTTCAAGCCCTCGCAGAGTGGTTCGGTCGGCGGGGTGGTGGATCAAGGTTAGACCCTCCATGGTTGACGCGGGGCCACTTGTGTTGGCATGAGGCGTAGTTATTGCTGGCGGCTCCGCGCCGTCGGGCTTCCTGCTTGGCGAGGTTGTCTGCGAGGGGAGCCGACGGATACTCGCGGCCGCGATTGAAGCAAAAGTCAACCAGTGTGTGACTGAGTGGGCTTCCGAGGTCGGCGGATGCGGCCGGCGCCGGGCGGTCCGCGGTGGCCGCCATCGGCCCTCGGGCGAGGTGCGTGCTCTTTTGGCGAATGGCTGCCGCATCGATGACCGGGCTGGCGACCGCAGGCGGCTTTCGTCGAAGCTCCTCGCTCCGTGGCGCCCGA # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGATCAACTCCGCGGGTGCGGGGAGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 3 173323-170366 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIWT01000002.1 Kitasatospora viridis strain DSM 44826 Ga0264275_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173322 29 100.0 32 ............................. AAAGGGGTGCGTGTTCTGCGGGATCGCCGCAG 173261 29 100.0 32 ............................. CGCCGGATCGAGGAGGCGGACGGTGTGCTGAA 173200 29 100.0 32 ............................. CAGCGGGCCGGTCTGCGGAGTCTCCCGACCCC 173139 29 100.0 32 ............................. TGGCCGGCGCCGTCGCCACTGGGGTCCAGGAA 173078 29 100.0 32 ............................. ATCTCAACGGCCTCCGCTGATCCGGCCGACGA 173017 29 100.0 32 ............................. TTCCCGCCAGCCGCGACGTCGAGGCCGGGCCG 172956 29 96.6 32 ............................G ACGAGCTCACCCGGCTGACGGACAGTCCGGTG 172895 29 100.0 32 ............................. AGGGCGACGGCGCCGCCCATGACTTCGACCAC 172834 29 100.0 32 ............................. AGCAGCAGCGACAGCACCAGCGCGGTGAAGTG 172773 29 100.0 32 ............................. GGGCGGTCAAAGAGGTAGCGGGGCACGCCGGC 172712 29 100.0 32 ............................. CGTATGCCCATGGTGTTCGCTCCTCCATGTAC 172651 29 100.0 32 ............................. ATCGCGCTCGGCATCGGCACCTCGCTCATCTC 172590 29 100.0 32 ............................. TGCGTGTTCAGCATCACGGTCGCGGTGGTCGG 172529 29 100.0 32 ............................. CCGCGCAGCCGGCCTCCGCCTGCAGCACGCGC 172468 29 100.0 32 ............................. CCGGAGAACCAGCCGGGCCGCTACCGACTCAA 172407 29 100.0 32 ............................. CTTCGCGCCTACGTCTACGTAGGTCTCGCCGT 172346 29 100.0 32 ............................. GGGCTCTGACCTCAAGGGAGTTTGAGCATGGC 172285 29 100.0 32 ............................. CAGCCCCTTCTGGCGGCTTGCTCATGAGCAAG 172224 29 100.0 32 ............................. CAGACCGCGGCGCGGCGCAGCGGGGAGACCTC 172163 29 100.0 32 ............................. TGCTCGACCGAGGACTGGAGGCGGCGGCATGA 172102 29 100.0 32 ............................. GGCCGCCCTGGACGCCGATCCGCTGGCCGAGA 172041 29 100.0 32 ............................. TTCTGGGCCGGCTCGAACTTCGACGTGCTGAA 171980 29 100.0 32 ............................. AGGCGGTGGCGGGTCACGCGCAGGCCCGGGAA 171919 29 100.0 32 ............................. CCGCCGGGCGGCTGCCCGCGTTCCCGCACCAC 171858 29 100.0 32 ............................. CCATGGCACCCAGCCGACCCACGCTGCCTTCA 171797 29 100.0 32 ............................. AGCGGCATGTCCTCCGTGTGGGCGACGATCCG 171736 29 100.0 32 ............................. CACGTACGGCGGGGTCGTCACCACCCCGGCGT 171675 29 100.0 32 ............................. GCCCAGACCGGCGTGTCCTGGGGCGAGGTCCC 171614 29 100.0 32 ............................. GTCCAGCGGCCACCCGTGGGCGGTGCTGTCCT 171553 29 100.0 32 ............................. GGCTCGGGCTGCTCGTCGGCCTGGTCCTCCTC 171492 29 100.0 32 ............................. ACCGACCGCCAGCACCACCACCCACCCACCAC 171431 29 100.0 32 ............................. ATGCACAACGCGATGCGCGACCACCTGAAGGA 171370 29 100.0 32 ............................. GGCTCGGGCTGCTCGTCGGCCTGGTCCTCCTC 171309 29 100.0 32 ............................. ACCGACCGCCAGCACCACCACCCACCCACCAC 171248 29 100.0 32 ............................. ATGCACAACGCGATGCGCGACCACCTGAAGGA 171187 29 100.0 32 ............................. CGAGTTGAGCTGGCCGTACAGCCGGTCCTCGC 171126 29 100.0 32 ............................. ACCCCCGCAAGCGGTGCCGGCGGCAGCCCGCA 171065 29 93.1 32 ........G..........A......... GGCTCGCCGACGCTGGGGTGGCCCCGGGCCTG 171004 29 100.0 32 ............................. ACCGACCGCCAGCACCACCACCCACCCACCAC 170943 29 100.0 32 ............................. ATGCACAACGCGATGCGCGACCACCTGAAGGA 170882 29 100.0 32 ............................. TCCGCGGGGTGGCAGGCACTTCAGGAGGGGGA 170821 29 100.0 32 ............................. CGAGTTGAGCTGGCCGTACAGCCGGTCCTCGC 170760 29 100.0 32 ............................. ACCCCCGCAAGCGGTGCCGGCGGCAGCCCGCA 170699 29 93.1 32 ........G..........A......... GGCTCGCCGACGCTGGGGTGGCCCCGGGCCTG 170638 29 100.0 32 ............................. AACACCTCTGGCCTGCGGGTCTGGCAGTTCAA 170577 29 96.6 32 ..............T.............. TACCACCGGCTGTCCGCCGATGAGCACGGCTT 170516 29 93.1 32 ...........C....T............ GCCACCGACCGCTTTCGGATCGGCTGGCGCCG 170455 29 100.0 32 ............................. CACCTGACGGAACCTCAGCTGGTCGCAGCCTC 170394 29 82.8 0 .................AC.A...G...A | ========== ====== ====== ====== ============================= ================================ ================== 49 29 99.1 32 CTGCTCCCCGCACCCGCGGGGTTGATCCC # Left flank : AAACGACCCCAAAGCCCCCGGGGCACCCCACTGGACGGGTGAACGGGCTGACAGCCCTACCCCGCGGGCGCACCGGCACGGCCCCGGCAAACGCCGACGGCACCTTCGGGACCGTCCACCAGAGGAGCGAGCACCTCACCCCGCGGCCGATGGCGGCCATCACGGACCACCCGGCGCCGTCCGCATTCGTCAACCCCGGAAGGTTGGCATTCGCTTCAACCACGGCGGCGAGCATCCGCAGACAACCCAGCCGACCAGCCAGCCCGACTGCGTGAAGCCGCCGTCAATAACTACGCCTCATGCCAGCACAAGTGGCCCCACGTCAACTATGAAGGCCTAACCTTGATCCGCGCCGACCGAGCCACTCCGCGTGGGCTTGGACCATTGCATCCAAGCAGTGCGATTTGGGAGAATATGACGTGCTTTCGCCAGCGGTGACCGAATCAATGAAAGTACTCTCCCGCGCGCCGCTTGCCTGACAAACCACCAGGTCAGCAACT # Right flank : AGCGAGTCCTCCTGTAACTGGACGCGATAGATGGCGGGCGGCGTCGCGGTCGTTGCAGGTCGCTGTGCGTGTTGGCAGCGGTAGTTGGCAGCCCTCCGCCCCTTGTGATCGCGGAGGATGAGCCAAACGCTCAGCTGATGGCCGCTGGCTCGCCACGAGCGAAGCCTGCCAAGAGCACCTCGTCGACGGCCTCCGACACCGGCCGTGCGATCGGCTGCCCTCTGCCTCAGCGTCGAAGCTCGTAACGCAGATGTCGAAGCAGCCCGGCCCGACGTCCTTCTGGCCGGCGCCCGGGCCCTGGTGTGCCGACGCACCCGGGCGGGCACTCCGGCCAGCCGTTCCCAGCGCGAGGCCGGGTGCCGGGAACGGCCGGTGGCGGGTAGCCTCCGCCTCCCGCGCAGGAGTTGGGCCAAGGCGCCGTTGCAAGGCGAGAGGCGAAGGCCAGGACGACGCGGCCCGGCGGCCGCTGCGGCGGCCGACCAGGCCTCCTCGTCAACGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGTTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGTTGGTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35-3052 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIWT01000004.1 Kitasatospora viridis strain DSM 44826 Ga0264275_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 35 29 100.0 32 ............................. CGCGTGGCCGTGGGACGCGGTGGCCGCCGCCG 96 29 100.0 32 ............................. CAGCGGTACCAGATCGACCGGGCGCTGAGGGC 157 29 100.0 32 ............................. AGCTCGAAGCCCAGCCCGAGATCCTGATCGGT 218 29 100.0 32 ............................. GGGTGCTGTCCGTTGCCCGCGAAGCAGACGAG 279 29 100.0 32 ............................. GGCAAGCTCACCGAGCGGCTGTTGACGATCGT 340 29 100.0 32 ............................. TGCAGGACCAGGTGCGGCTCGGCGCCGACCCG 401 29 100.0 32 ............................. TGCGCCGGGCCCGGCTCAAGTTGAGCGACGGT 462 29 100.0 33 ............................. CCGGTACCTACGTGAAGGCCGAGCAGCCGCAGA 524 29 100.0 32 ............................. GACACCGTGCACCGGACCCTGGTCCGCAGACT 585 29 100.0 32 ............................. GCCCAGCGGCTGCTGCCGAAGTCGATTCGGTA 646 29 100.0 32 ............................. TTCCAGGCGTTGAGCGCCCGGCTCGAACAACT 707 29 100.0 32 ............................. GTCAGCGCCATCTCCCGGGCGTCCTCGACCTC 768 29 100.0 32 ............................. TGCACGCCACGATCACCGACGATCGAGGTCCC 829 29 100.0 32 ............................. CGGCCGTCAGGTGGTCGGTCAGGTCGGCCTTG 890 29 100.0 32 ............................. TCAGCGCCCGTTCCATGTTCCCCTTTTCGCCT 951 29 100.0 32 ............................. GGGGAGACGGCCGCCTTCACGGAGCCGAACTG 1012 29 96.6 32 .A........................... GCCGCCGCGAAGTGATCCAAGCGCTCGGCGAC 1073 29 100.0 32 ............................. CCGACCGACAACGGCGGCACGCAGACCAGCTG 1134 29 100.0 32 ............................. GGCCCGTCAGCCACAGCGCGAGGAACCGCGCG 1195 29 100.0 32 ............................. CCCGGGGCGCCGCCCGCCCCTGACCAACCGGC 1256 29 100.0 32 ............................. GCCCGGACCTGCCCGACGTCGTACAAGATGGG 1317 29 100.0 32 ............................. TGGGGATCGGATGAGGTCTCCCGGGGGTGAAG 1378 29 100.0 32 ............................. GGCTCGCCGGGGGCGGCCGGCGGGCCGGCGGT 1439 29 100.0 32 ............................. GTTGCCGGCCGCGCCTCCGAACCGGCCGGGCT 1500 29 100.0 32 ............................. GAGGAGTGGGAGGCGTTCCTGGTCCGGATCCT 1561 29 100.0 32 ............................. TGCTCGGGGTCGTGGGCCAGGGCGAGGTCGTA 1622 29 100.0 32 ............................. TTACTTCCGATCAAGCCTTACTCTGTGTCGCC 1683 29 100.0 32 ............................. TGCCAGACCCTCAAGCCGCTGGTGTTGTTCCG 1744 29 100.0 32 ............................. GGTGCCTCCCTCCTGGCGGATGTTGACGTTGG 1805 29 100.0 32 ............................. TCGCCGGCCCTTGACCTCGGCCTCCTCGATGA 1866 29 100.0 32 ............................. GCTCCCGGGGCTTGGGACAACCCCTGATCAGA 1927 29 100.0 32 ............................. GCCGTGCGGCACGCCGCCAAGGCGGGCCCGAT 1988 29 100.0 32 ............................. GGCGAAGTCGTGCACCTGGACCGGCTCGCCAC 2049 29 96.6 32 A............................ AGCTCCGCCGGCCCGGACGGCTCCGTGGTGAG 2110 29 100.0 32 ............................. GTAGCGGCCGGCCCGGCGGTGCGCATCAGGAG 2171 29 100.0 32 ............................. TTCGACCGGCTCATCGCCCGCTCCGGCCTGAC 2232 29 100.0 31 ............................. TGCGGCACACCATCATCAGTCTCGGGGGGCA 2292 29 100.0 32 ............................. CGTCATCGCAACCCCCTCCCAGAGGTCTTGGA 2353 29 100.0 32 ............................. TCGCCCGGCCAGTCGGCGCCGCCGTGGCGATG 2414 29 100.0 32 ............................. GTCCCCACCACCACGACACCGGCCCCCGCCGT 2475 29 100.0 32 ............................. GTGATCGGCCGGATGACCGCCGCCGGGATGGA 2536 29 100.0 32 ............................. TTGTCGCCTTCCCCGTACCGGCAATGCCGTTC 2597 29 100.0 32 ............................. ATCACGTACCACGTCGCCGACATGACCGGCCA 2658 29 96.6 32 .................A........... TACGATCAGTTGCTAGTGGAGTCACTGTCAAA 2719 29 96.6 32 ............T................ GTTTGGTGTGTCGGGGCGGTGCCCGGCCCGTG 2780 29 96.6 32 ............................T GCCCACCCGTGGCGGCGGTGCAGACCTATCTC 2841 29 89.7 32 ..A...........G.T............ CGCCAGGCCGGTCGATCCGGCGTGGGGCAGGA 2902 29 100.0 32 ............................. AGTTCCGGGCCCGCTGCCAAAAGCGCGCGAAG 2963 29 96.6 32 ..............T.............. TTGCCGAGGAACCCGACCAATGCCAGAGGCAG 3024 29 75.9 0 ...T.....A..G.T.T......AC.... | ========== ====== ====== ====== ============================= ================================= ================== 50 29 98.9 32 CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Left flank : CCGCCCCGCTCGCGGTGTTCCGCGAGATCGAACCC # Right flank : CAGCTCGGGCGGGAGAGGCCGCATCAGCGGCTCCTGATTCCCTGCACCTGCAAGGCTCGTTCTTGACGGAGAAGCAATCTGGCGGGTAATCAGCCCCGACCTGTACAGCCCAAGCCAGCTCCAAACCGGCGCAGTTGGCTTGGCACAAGTCTCCTCGCAACCCCTGACATGTCGGAGCAGTGGCAAGTTCGCCCAAAACTTGTGCAGCGCACGGGCCCTGATGCCGCGCCAGCTACAGGCCCATCGGAGAGAAAATATGAGCATTGACGCGCACCCGCGACACTCTGACAAACCGACAATTCGTTGACCCTGACAAGCGGATGCCCCACCGCTACCATCGGATTGCGCCGTACGGCGCCAGGCCACCGGCGGGGTCTCCTCACCTCCTCGCCACTTTCGAGGCCGGACTGATTACTCCCTGAGCTTCGGGGATGTTCCCTAGATCGCGTGCAATGCGACCTGCTCCCCGCACCTGCGGGGGTTCCGATTCAGATGACCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 14176-15973 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIWT01000004.1 Kitasatospora viridis strain DSM 44826 Ga0264275_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14176 29 100.0 32 ............................. CGGATGCACACCAAGCTGTCCGTCCTGCTCCT 14237 29 100.0 32 ............................. GATATCGTTTTTCGTATCCACTTCGCCGGTGC 14298 29 100.0 32 ............................. GGTGAACGCCGGCCGCTGAATCGCCGAGGCGA 14359 29 100.0 32 ............................. GGTGCGCTGAACCAGCGGAGCACACCGACCCG 14420 29 100.0 32 ............................. TGGAAGGGCGGCTCGCCGGCGGGGCTGGTGAC 14481 29 100.0 32 ............................. GCCGAACCCGATCCCGTGGGGGCGGCGGCGTA 14542 29 100.0 32 ............................. GGCGACCTGGCCCGCACCGAGTGGGGCACCGG 14603 29 100.0 32 ............................. GTGGAGGGGACCGGCTCGAAGAAGAACCACCG 14664 29 100.0 32 ............................. GCTGGCACGTCGTTCTCCACCGCGGTGATCAG 14725 29 100.0 32 ............................. GGTATCGCCCGCCCGGCCGCGGCCGGCCGGTC 14786 29 100.0 32 ............................. AGCCACAAACCAGGACACAGCCGGGGCCGCCG 14847 29 100.0 32 ............................. CAGTGGCAGCAGCAGTACGAGCAGTTGCAGGG 14908 29 100.0 32 ............................. GTCACCCCCTTTCCGGGAAAAAGCGCAGGAGT 14969 29 100.0 32 ............................. GGTATCGAGAACAAGATCCCGCAGCTGCGCTC 15030 29 100.0 32 ............................. TGCATGTCGTGGGGGTGGCCGCCGTGGGCGTT 15091 29 100.0 32 ............................. CTGTCCGCCAGCCAGCGCAGCGTCCTGGAATG 15152 29 100.0 32 ............................. CGCGGGGGTCTGCGCCGGGGCCGGCGCCGGGT 15213 29 100.0 32 ............................. GACGGCGCCGCCGTACCGGAGAACGGCGCTGG 15274 29 100.0 32 ............................. ATGCCGAGCGTGCTCATGGACGAACCGAGACG 15335 29 100.0 32 ............................. GCACGAGTGCCGGGCCCGGACCGTGGTCCGAA 15396 29 100.0 32 ............................. TGGCCGCCACCGAGGCCCGCCTGGGCGGTGGT 15457 29 96.6 32 ....C........................ GGTCTGGTTGGCCACCTCCCAGCCCTGCGCCA 15518 29 96.6 32 .........A................... GTCGCAGGCGTGGTGGGACGCTTACCTTGCTC 15579 29 100.0 32 ............................. CCGCTGACCTGGATCGTCGTCGCGGTAATGGC 15640 29 96.6 32 .........................C... GGGTGCCGCCCGTTGCCCGCGAAGCAGACGAG 15701 29 96.6 32 .........................C... GGGTGCCGCCCGTTGCCCGCGAAGCAGACGAG 15762 29 96.6 32 ...............G............. GGTGCCGGTCTGGGTGGAAACGGCGTTTCCAC 15823 29 89.7 32 ........T......G.........C... CAGGCTCCCGCCGGCACGAGCTACGCCGTGGT 15884 29 89.7 32 ...........G..TG............. TACCTTGCCGGGCAGTACGCCGAGCTGCACCC 15945 29 86.2 0 .........A..T..G.........C... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.3 32 CTGCTCCCCGCACCCACGGGGTTGGTCCC # Left flank : AGGTTGGTCGCCCGACGGTCTGTGGCGTAGACGCCGCGTTCCGTTGGGTCTCGCGCCGTTACGAACCGGCCCGCACCTCTCCTCCTTCTCCCGCTGGTGATCTGGTAGCCAGTCACATGCGCCCCGCTGTCGGACGGTTCATCCTGGCCCAGTAGCGCCCCGGTGGTCGCGGCCGCAGGCTCGCCGACACGGTCCCGGGCCGGGGGTCACGAGCGACGAGCCTCCGGCTTCGCCCTGTCGTGCGGCACGGCGGTGAAGGTGCCGCCGGTCGGCCAAGGCCAACTCCGCGAACTCTCAGTAGGAGCGCGCGCCATGCGCCGCCAGCGAGCGTCGGTCACCACAATGACAAGTGACGTCGCGTCAACCACGAAGGCATAGCCTCCCACCACCCCCGCGCCGTGTTATTTCAGATAATAAGAGGCACTTTGTCGGAGATGCCCGAATCAATGAAAGTACTCCCCGTTGCGCCGCTGGCCTGACACACCACCAGGTCAGTGACT # Right flank : CGATGCAACGAGCGGTGCCCGCGTGCAGCCCGCCGCCACGCCAGCGTTGGCAGCCAAGTGGGCGCTCTGCTCGCCCTGCGGTGCCGCCTGGCGTGGCCCCGGGCTTGAGGCCGCCTCAGCTCCTCACCGGGACGTCGCACGCCTTCCGGTCCGCCGGGTAGGCGTGCGACGTCGGGAATTCGAGGCCTCCCAAGTACGTCTGCACGAGGGCGGTGCAGTCGGCGGTGGCGGGGGTGTTGGTCTGGGTGCCTGCGTGTTCCTGGTCGAGGTGGGTGATGGCGTCGGCGCAGTCGAGGGGCAGGTCGGCGCGGCCGAGGGTGATGGAGGCGATCATCTGGTTGACCTCGGCGTCCTGGGCGGGGGGTGAGGTCTCCGTAGGTGGTGAGGCGGATGTGGGAGGCGGGGGCCACCAGAGGCGGTGGTCGTGCTTGCGGGTGCCGTTGTCGTCGGGGAGGACGTCGGTGTGGACGGTCCAGGTCTGGGCCTGGCGCCCGCCCATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCACGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //