Array 1 55486-55053 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB898203.1 Paenibacillus massiliensis 2301065 = DSM 16942 D328DRAFT_scaffold00019.19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 55485 32 100.0 35 ................................ TCCAAGAAAATGATTAAAATCTATAACAACTTGTT 55418 32 100.0 34 ................................ GCTTTCCGGTAGGCTGCAAGATCGATCACGTTCC 55352 32 100.0 35 ................................ TTGGCCGTACGGGTCTATAGCTGCGACCACATATT 55285 32 100.0 34 ................................ CCCTCGGCTTCCATGTATTATTGGATGCGAGATA 55219 32 100.0 35 ................................ TCTTGCAGTTGGTTCCGTGCTTGAGTCATCTGTTC 55152 32 100.0 36 ................................ TGGCTGGTAACTATCAAGCATCGCCTTCCACGGAAT 55084 32 87.5 0 .......................CTG.....A | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 98.2 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TCTCCGCTGTTCGTGGAGACATGGCATGTTAATAGGTGAAAATGGAGCTGTTGTGCGGGGAAACGACATGGAAATGCTATGTGCTTGGAAAAGCTGATTGGGAAGGCTACGTGGAGAAGGGCTACGGGCTCGGAGGTTTCTTTCGATCGCTGTTAAAGCCTGATTCATTCATATTATATAAAAGAATTAGCGGATTAAATCATGCTTTAAATGCGAGCACTTCGTTTCTACAGAAATCCTCCGACCCTCCGCTACTGCCGTGGCTCAAGTTACTTTAAAAATAGATATCCAAAACTGAGCTGTTTCCAGCTATCTTTTGGGGCGAATGCCAAGCTCACATGATTTCCCTGGGACATTCGCACCTCAGATTTTGTCGAAAGCATGTCGAATGTGAACAAAACGTGAACACACCTGCATTTCAAGCCGCATGAAGTCTTCCATTTTAATGGATATAAGGTAAAATATAGGCTAGGTACAGCGTTTATACGCTGTTTTCCGCT # Right flank : ATTGCATAACAATATCTCTGGTTAACTTGAAGCTCACTCCAAATGCCAAAAGCCCGCGATCCTGACGGATCACGGGCTTGTTGTTTTTAAACCGGTCATTAATCGAAAGTACGAGACATGCACCCACTATAGCGGAGGGTCGAAGGAATTCTGGAGAAACGTAGTGCTCGCCTTTAAAGTACGATTTCATCCGCTAATGCTCTTAGTTAATAAAAGAAATAGGACTTTAACAGCGATCGGAAGAAGCCTTCGAGCCCGTAGCGATCTCCACTCACGAACAATTCACACTGGTTTTCATGTTACCAGCTACGCATGTCTGCGTCCCCATCACAATTATGTCGTGCTAGAGGCCTTGCTCTTATTTCTCACAGGCGGCAGAATCTTACTCTTATCAATGGTACGCTTGATCTCCCACGTCTCAGGCTTCTCGTGATCATACTGCTCCAAATACTGTACTACTTCCTTCGTAATCAGAGTCGGCGTGGACGCTCCAGAGGTCA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 81990-81556 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB898198.1 Paenibacillus massiliensis 2301065 = DSM 16942 D328DRAFT_scaffold00014.14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================================================================================================================================================================================================================ ================== 81989 32 100.0 35 ................................ TTCCTCTCTTGTTACTAAGTACAATGCCCTTAGTA 81922 32 100.0 35 ................................ GTTCCGGAGCGCAAGGACTCAAAAAAGCGGCAAGC 81855 32 87.5 236 ....................A.A.......GC CCTGCAACGTTTTGATTCCAGCCGTTTTGACTGTATACGATTGTGGACTTAAACGATCTAAAATAGAGCGTGGTTAGGGGAAAGCGGGGAAGCCCTAGAGAAACGGAGTGCCCATCTTTAAGCTTGCTGTTCATCCGCTTTCCATTTCGTTCGAAAGAACAGCAAGCTTAACCATGGTCGATAGGGCTCCCCGCTTGCAGCGGCTCTACACTCACATTAATCTGGTCAAGGTAATA 81587 32 65.6 0 ...A....T.TG.AA.....TC..T..A..G. | ========== ====== ====== ====== ================================ ============================================================================================================================================================================================================================================ ================== 4 32 88.3 102 GTCGCACTCTACACGAGTGCGTGGATTGAAAT # Left flank : CCTTCCTCAAGGAGGTTATATATAAACTATGGATAAATTCATTTATCCCGCAATTTTTGAGAAAGGTGAAAACATTGGCTACACCGTGACCTTTCCCGATCTACCGGGTGCCATTACCGAGGGAGATGACATGGAGGAAGCATTGCGTATGGCTCGTGAGTGTTTGGAATTGCATTTGTTTGGAATGGAAGAGGATCAGGATAAAATCCCAAATCCTACAGATCCAACAGCAGTATTAGCGCCTAAGGATTCTTTTGTCACCATGATTGAAGTGAGAATGGGATCTATCCGAGATGAGATGATGAACAAGTCTGTTACGAAAAATGTAACCATTCCACGCTGGCTTGAGAAGGAAGCTGCGCGTGAGAAGCTTAACTTTTCCCAAGTGCTTCAACAGGCGTTAAAGGAACGCCTAGGAGTGAAGGACTACCCGACAGCCAAATAGGGATATATTGCATGCAACATTTTTTGTAGTTCCTTACACTACGGTTATTGAACAG # Right flank : GGTCATTGTCGATTGTCGATCTTTTACGCCTTCGTTTGAATAGTCACACTCTACACACCGTGGAGGGATATTATGAAACCCAAACAAAGATCAAGGTTTAGACTTCTAGCTGGATCTTGTTACTTCAAGTTCAAAAGATACTTGAAGTGGCATTTTGGACATGTAAAGTTTGCTTCTCGTATAGAAAATGAAAAGCTCCCATATATCACCTTTACACACCAGACCCCTCTGCTAAGAAAGCTTAAAGAGGTCGATATGTGGCTGCAACACAACAAAATCATTAATCTGAAGATCGCCAAGCAAAAGCTAAATAAGATTACGATTGCTCCGGGAGAGACGTTTTCATACTGGAAGCTAATCGGCAAGCCTACCAAAAGAAAGGGCTACGTGGAAGGAATGACGTTATTCTACGGAACGTTCAGGCCTGGTGTGGGGGGAGGGCTTTGTCAGTTATCCAATCTCATTTACTGGATTACGTTGCACACGCCGTTGGTCGTGAC # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:3, 4:0.41, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACACGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 84634-82928 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB898198.1 Paenibacillus massiliensis 2301065 = DSM 16942 D328DRAFT_scaffold00014.14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 84633 32 100.0 33 ................................ TTGACTATCAAGAAAATGAAATTAAATTATTTC 84568 32 100.0 35 ................................ ATATCTGCTAATATTTTATTTCTACACATTGTAGA 84501 32 100.0 35 ................................ TCCATTTATATCACCTCATATATGATTATATAAGA 84434 32 100.0 36 ................................ ACTTTGAATCGCGCTGTCTTTTTATTTGTGTTGATC 84366 32 100.0 34 ................................ ATTTGAACTGACCCGGCGCTACCCATTCCCTTGA 84300 32 100.0 36 ................................ GGTATGTCCTGGCCGATATACCGAGCTTAGCAGCAG 84232 32 100.0 35 ................................ CCGCTGAGATGATAGCCAATCAAAGCAAGCTTAAT 84165 32 100.0 36 ................................ TATCTGGCTTGGAGGAATTAGAGATGGAGCTTTATG 84097 32 100.0 37 ................................ ATATAGCCCCGGTACTTTCTGCAATTCGTTGAAGAAG 84028 32 100.0 35 ................................ ATAGACTCTTCCAGATCAGCAGCTATCAACCGCTC 83961 32 100.0 35 ................................ CAATTAATATTTATGATGATAATGGAACAATTATA 83894 32 100.0 35 ................................ AAAATATCGGTTATCTACTGATAAATGCCAATCTC 83827 32 100.0 35 ................................ TTTCCAAGTTTTAATTTATATGAATGGAATATAGA 83760 32 100.0 35 ................................ TGCATAATCCCTACAAATATTCGAATAAATCCGCT 83693 32 100.0 35 ................................ TGCATAATCCCTACAAATATTCGAATAAATCCGCT 83626 32 100.0 35 ................................ TGCATAATCCCTACAAATATTCGAATAAATCCGCT 83559 32 100.0 35 ................................ TGCATAATCCCTACAAATATTCGAATAAATCCGCT 83492 32 100.0 35 ................................ GATTTTGTTGGTGCGGTAGAAGTTTTGACCGGGGT 83425 32 100.0 33 ................................ AAAAGCTTGGGTCGTTACACCGGGCGAGATGTA 83360 32 100.0 35 ................................ AGGACGTTGCGTATTCGATCAAGACAAGATCGTCA 83293 32 100.0 35 ................................ TTGGTCTTGTACACTGGATGAGTCCGCATTCCGAA 83226 32 100.0 35 ................................ TTTTCAAGTTTCAGGGCTGAACATTGTTGGCGAGT 83159 32 100.0 35 ................................ ACGAAGTGGGACATGAGCCTTACCATCAACGACGA 83092 32 100.0 35 ................................ CCTATTGTTGTAGTCTAAATAATCCATGTCTGACA 83025 32 100.0 34 ................................ CAGACATAGAGCGGAAACAGTTGCTTGAAGGTGA 82959 32 93.8 0 ...A.....T...................... | ========== ====== ====== ====== ================================ ===================================== ================== 26 32 99.8 35 GTCGCACTCAATACGAGTGCGTGGATTGAAAT # Left flank : CATATGATGTCAGCACTACCGATGCGGAAGGAAGACGGCGGTTGTCCAGGGTTGCCAAGAAATGCGTAGATCACGGGCAGCGAGTCCAGAACTCTGTTTTTGAATGCATACTGGATGAGACGCAGTATCGACGTTTGAAGCTGGAGCTTGAGGGGCTAATTGATAGGCAAACCGATAGCTTGAGATTCTATAATCTTGGTAACAATTATAAGAAAAAAGTAGATCATACGGGAGTCAAAGCATCCTATGATATGGAAGGTCCGTTAATTCTATAGCGGAATGTATCGGGTTTTGGTCAAAAGTAGTATGTGACTGTCAGGTGCGAACCCCAAGCGCACATGAAAACCCCGGGGGATTCGCACCTCAGATTTTGTCGAAACCGAGTCGAATGTGAATGAAATGTGAACGCCATTCTACTAGTTAAGACATTATGGACATGAAGTAAGACGGATCCACGTTAGAAAAGAGTTGTTTTGCTCTTATTTGAGCCATTTTTCGCT # Right flank : ACAACTCGCCCGGTGTACCCGGTTGATCGCATGGAGGACACACTCTAATAGACGTTTAAATAACGCAGCTTCACATTCATGTCTAGTGCTGGCTGGGGACTCAATAGTTAATTAGCGATAACGTATCTCTCTTATTCTTTGATATTAAAGTTTTTGTGTACTTGTAATCACATGCATTTAGTATAGCATGTGATTATTTACGTGCATAATTTATGCATGTTAGAATATACTTAGAAAGGAGGATGATTTTGGGCTACTCATCACGCAGCATTATAAAGAAGATTGAAGCGGATGGGTGGTACTTGGTTAGGGTCAGAGGCAGTCATCATCAGTTTAAACATCATATAAAACAATGCCTAGTAACAGTGCCACACCCGTCAAGGGATTTAGACCCTAAAACAGCAAAATCCATACTCAAACAGGCGGGACTACAGTAGCCCTTCCTCAAGGAGGTTATATATAAACTATGGATAAATTCATTTATCCCGCAATTTTTGAGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCAATACGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.60,-2.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 94070-93704 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB898198.1 Paenibacillus massiliensis 2301065 = DSM 16942 D328DRAFT_scaffold00014.14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 94069 32 100.0 35 ................................ ACATAGTTAGGACTTCGTTTTTCTGACAGCATTTG 94002 32 100.0 35 ................................ AATTGTGACTGGCTGAGTTTTACAGCCGACTTTGC 93935 32 100.0 35 ................................ TCAATAGATAAAAATAGAGAACAATATATAGAATT 93868 32 100.0 34 ................................ CCCATACGGAATAAGATACCTGGCGCAGAAGGTT 93802 32 100.0 36 ................................ AACGATGCGCTGATCGGCATTGAGATGAACTTTAAT 93734 31 90.6 0 ..................C-....C....... | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 98.4 35 GTCGCACTCTACATGAGTGTGTGGATTGAAAT # Left flank : GGTTAAACATGATGAAAAGGATGGTTTCTTCTATAGTTTTAATTAGTTGCTTTATGGCGGTATGCTTCATAAATCCACTAATCCCAGAAGTTCCAGGAGAGCAGCCGATATCGCCTATAGTTATTCAACCACAGGGACATACAGGCGGGATGTAACATTTTAAATGATGGATTTCTCAATACATAGTGTTGTAGCTCCTTTGTTAGTTGTAATGCAGAGAAGGGGCCTTCCCGATCCGATTGGTGGATTAGGAAGGCTCCTTCGCTATAAGCTGGATTAGTCTTTTGGGCTTAAGTTACGAATTGCCGGTGCAGACATCTGGTGCGAACCCCAAGCTCACATGAAATCCCTGGGAGATTCGCACCTCAGATTTTGTCGAAATCGAGTCGAATGTGTATGGAATGTGAATGGGTTCGAGTTGAAAGTATGAGTTGCGTTTTATTTCTTCGGGTCTACGTTAAAATAAAGATGGAAACAACTCTTTTACGTTGTTTTCCGCT # Right flank : TGGTAATCGCCTTCCTGTTCCTCGTTGTTCTTGGTCGCACTCTACACAAGTCCATGAAAAATTGCTGCTGCTCAGTAGAGCGGCTTTTTTTCGTTCAGCAAGGACACTTTAGATTTTCGCATGTTTATCACAATTTTCTACAAAATAATATAAATTTAGAAGGTTTTCTAGCTAAGAGGTCGAATGGTAAGAATATAAGTCTATGTCCTATGAACTATTCGATGTCGTATATTCGTGCTTCGATAAGATGATTGGGGTGAGCCATACGAACTATATTGCACATATTCGTGAATCAGATAAGACGATACAGACCGTCCCTGAGCATTTGTCGGGGGTACGAGAGTATGCGGAGCAGGCAGGGTCTAAGATTGGATTCAGACATTTCGCAGGACTGACTGGATTGCTGCATGATCTGGGCAAGAACACAGAGGAGTTCTTGACGTATATCCAGCAAGCTGCGGCTAGCACCAAGCTGGAAGACGCGCCGCGCAGAGGCTCGG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 97629-96257 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB898198.1 Paenibacillus massiliensis 2301065 = DSM 16942 D328DRAFT_scaffold00014.14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 97628 32 100.0 38 ................................ TTTTATTTGAGAAACCATAAGAGTGGAATCACTATAAA 97558 32 100.0 36 ................................ AAAAAGGATGGATTGGATTTAATGGGCATGATGCCG 97490 32 100.0 36 ................................ CAGAGAATTAACTATTGATGATTATATGTATATCTT 97422 32 100.0 36 ................................ TCTACTAATAAACCATCTAGTTTATATAATCCAGTT 97354 32 100.0 34 ................................ CAACTATATATGATAAAGAGCCATTGGCAAAATA 97288 32 100.0 36 ................................ TTTTCCTATTATTACATTGTAAATAAGCCCAGTAGT 97220 32 100.0 35 ................................ AGGAAAAACGTCAAATTGAGCATGTCGGAGGCGTG 97153 32 100.0 34 ................................ TGATTGCTGACGGCAAGCTGCTTGACCCTAATGG 97087 32 100.0 36 ................................ AATGATATCGGATCAGCAATCGAGGGGTTAAAGCGC 97019 32 100.0 35 ................................ AATCGTAAGATGTGGATCTCCAGAAAACAGAAACA 96952 32 100.0 35 ................................ AATTACTTTTTCTGCAATTTGTCGGGTGTTACTGG 96885 32 100.0 36 ................................ TGTGGTTGGGATACCGCCGCCGAGGATGGCAGACGG 96817 32 100.0 35 ................................ AAGTCACAGGACTTGGGTACAGCACTGGACCCGTA 96750 32 100.0 36 ................................ TCCTACTGCCGTTCATCCTGTTAGGAGGTATAACAA 96682 32 100.0 35 ................................ ATCACAATTAAGCAATTTATTGATTTAATCAAAAA 96615 32 90.6 35 .........AA..C.................. ATCACTAGCCAGCTCCCGAACATAATCCCGAACAA 96548 32 90.6 35 .........AA..C.................. TCCTCGGCGTGCCAGATGTCGCCGTCATGATCGAC 96481 32 90.6 35 .........AA..C.................. ATACAAGTCTTCAGCGTGACAATTTAAGATAAGCG 96414 32 87.5 35 .........AA..C.....T............ ACCTGAAATTGCACGGGTCATCGCGGACGAGCTAC 96347 32 84.4 25 .........AA..C...C.............A CTATGTCCATTTTTAAATGTCTCAT AC [96318] Deletion [96291] 96288 32 71.9 0 ..T...........A.TCT.A......A.T.C | ========== ====== ====== ====== ================================ ====================================== ================== 21 32 96.0 35 GTCGCACTCTGTATGAGTGCGTGGATTGAAAT # Left flank : CCCGGGCACAGCAGGAAATTGACGATACCTTGATGCTGCTGGAGATCGAGACGGATAGTGAGATCGGCTTTTGCTGGTGGGATGCGGGCGTGCTGCATTTCTTCATCCGTAAAGAGGATCTGCTGGCAGGCAACTTTGAACGAACTTATTGTGCCTTGTATTCGAGCTAGGGAATATAAGGAAATAAGTGATATAGGCGATATAGGTGATATAGGCGATATAAGTAATGTAAATGATGCAAATGATGTAAGTTAAATGAGAGTGGATTGTGGTCACTGAGGAGGTTCTATGTGGGCATGGGGAATTGCGTGCGTTAGTGGTGCGAACCCCAAGCTCACATGAAATCCCCGGGGGATTCGCACCTCAGATTTTGTCGAAACTGAGTCGAATGTGAATAAGGTGTGAACCGGTGGCGTGGAAAAAGCCCTCTATACCTTTCATTTGTACGAAAGTGCGGTAGAATAGAAGGTGGAAACACCTTTTTTACGTTGTTTTCCGCT # Right flank : AGCTTGTTAAGCTCCAAAATCCTCGTCGTCTAACGGACTAGCAGTCTTGATAACATTACTCTCCGGCACACAATTACTGGATACCAGAAATAACAGGTAAGCTAAAGCTCGAAGTAAGAGGGTCCTTATTGTGGGGCCACTCTTTTTGTTTTCTGCAAAATCCTGGTTTCGAGCATGATCTAATCAAGTACCTGCTTCTTATTCATCAGTCGTCTTAAATGTCATCTATTAATGGAATATTTTGTTTTGAGAATACTAGTGATATAATTAAAGTACTTGTGTATATTAATTCCATAAAACCATAAAAACGTAATTGCGGAGAGGGGTATCTCATGCATACACCCACGATTCGGACAGAAATTAGTGAGTATTTACAGGTTCATAATATGAAAACGAGTGATTTCGCTACTGTTACCGGGCTGAATCCAGGAACAGTAAGTAGTATTTTGACTAGTAATCGTGCTCTGTCTGTACACCAATTGGATTGCGTAACAACAGGA # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 191631-191998 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB898189.1 Paenibacillus massiliensis 2301065 = DSM 16942 D328DRAFT_scaffold00005.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 191631 32 100.0 35 ................................ ATTTGCTTCATATTTAATATTTATTACTTTTCCAA 191698 32 100.0 35 ................................ CGTCTAAGTAATAAGTAATCAGTTCCCCGACCTCT 191765 32 100.0 35 ................................ TGGGTACGGTCAGGCCATATATATCGATCACGGTA 191832 32 100.0 35 ................................ AGAATTTTGGCAGGCTGCTGGCTATTTATTGTCGC 191899 32 100.0 36 ................................ AATTGTCCCAAACTCTGAATTGCAATCAATGTTCCA 191967 32 93.8 0 ...............GA............... | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 99.0 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CTCGTGTCGCTGACGACCCTGATTCAGCTACCGAATGCCTCGTTTATTCTGACCTATCTGGGCGGCTGTGCTGCAGGGGTCCGTCTCCTGAAGGGTAATCGCTTCGGACAATGGATTAGCGGGATCTCCTTCGGAGCCACTGCTGTCGTGTTTCCTTTCACAGGCTGGGCGATGCTGTACCCGGGAGTCGTGCTGCTGGTCTTCGTACTTATTCGCTGGCTGCGAGGACGAAAATCCATCATTGTTGAGGAAAAGGGTGCACAGACCCGGCGAGTGTAGCCGAGTAACGGAGCGGAAGACAGAAAGGCGGAATGATGAGGTGCGAATGCCAAGCTCACATGATTTCCCCGGGGGATTCGCACCTCAGATTTTGTCGAATTGAAGTCGAATGTGGATGAAATGTGAACAAGATCTATTTTAAAAGTCGGGGAAGATTTCCATTTGAACGGATGTACGCTAAAATAAGAGCTGGATGCAGCGTATTTACGATGTTTTCCGCT # Right flank : TTTCAGCCCCGTTCTCAACAGCAGAATTCCTTCACCTTCGGCATAAAAGACTTTATTGATTCCACATGGCAAGAAGCATATCTTCTTCTTGCACGAAAAAAAGAGCAGAATAATCTGCTCTTTTAAAACAAGCTATTCACCTCTACCTTACCTGCTCACTGGAGCAACACCTAATTAAGAGAGTTACGCTCCTCCAATTTGATCCCGAACTTGAATTGGCCCGGGTAGTTGAATGGGCAAAGTAAACATAAATAAAATACTAGCTACGATGGATAGTGTTACCAATCTTTTCATCATTGTTTAACCACACCTTTTCCACGAGATTTAGAAAGCCATCTTTAATCTCAGGAAGCGCATGCTCCTGAAAGTGTAAGAATAAACCCATGCAGTTTAAAAAGTAAGTCTTATTATTAATAATATGTGACTTTGACATAGCATACATCAAATATTTATAGCCATAACTATACATTGAGCGATATAGGTAATAGTAGGCTAATTCA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 194314-195347 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB898189.1 Paenibacillus massiliensis 2301065 = DSM 16942 D328DRAFT_scaffold00005.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 194314 32 100.0 35 ................................ AAGCATTGTAAATGTTAATTTAGATGAAATCAAGG 194381 32 100.0 36 ................................ ATCACTAAGTTGATACCCTTTCAATGTTGCATATAC 194449 32 100.0 35 ................................ TTCTGTTTCAAATTCTTTTTCTAATGTAATATCCT 194516 32 100.0 35 ................................ AGCCAAGTATTTAACACACGTGTTGTTTTACTTAC 194583 32 100.0 34 ................................ ACCCAGATTTGATGTGTACACACCCTTGGCTGCG 194649 32 100.0 34 ................................ TACTCCTGATCGAGCAAGAGGCTACGAGCGCCAG 194715 32 100.0 35 ................................ TCTACCCGTAAGGAGGATATAACTTGCTGACTGTG 194782 32 100.0 35 ................................ ACATGGGACCGCATCGAAGAGGCGTACAAAGCCAA 194849 32 100.0 35 ................................ TTGCCTAAACCTTGCCATACTCTAGCACCTCCGTT 194916 32 100.0 32 ................................ TCCATTTTGAGGTATTGCTTATCTGCGTTATC 194980 32 96.9 35 ............A................... AGTAGCCACCATCTCGCAAAATCTTGGCATTAGCT 195047 32 100.0 35 ................................ TTAACCCTAATCCAATACATCCATTCGTAATGGGA 195114 32 96.9 35 ............A................... TCTTGGCTGATGCCTTGTGAGCTGTTGCTACGATT 195181 32 96.9 35 ............A................... GCCCGTACCAGTGCCTCAGCGAATGGAGGCGGTAG 195248 32 100.0 35 ................................ ACTCTGGATCTCAATGCAGCCCGAGAGGAACGCAG 195315 32 84.4 0 .....................C.TT....TC. | A [195336] ========== ====== ====== ====== ================================ ==================================== ================== 16 32 98.4 35 GTCGCACTCTACTTGAGTGCGTGGATTGAAAT # Left flank : TTAAGTAATTCATACGTTTTTAAGTATTTTCCTACAAATACTTCTCTCATCATCCACAACTTGATCGTCACAATCAACGAGATTGCCATTGTGCAGATACACTTAATTTATCTTCTTGTACCCTTAATGTATTTTCGTTCAAAAAAATCGCGAATCCCTTAATAGCCCCATAAGCAGCAGCCCGAATTAATAGCGCAATTCATTGAAGACTATAGAATATACAGTTGTCATGATAGCCCGGATTATATAGCCCAGACATACGCTACAAATCCGTGTGTTTCTGATATGCGTCTTTCTCCGAAATCTTCGCTGGAGTTGGTGCGAATGCCAAGCTCACATGATTTTCCCGGGAGATTCGCACCTCAGATTTTGTCGAATCGAAGTCGAATGTGGATAAAATGTGAACAAGAGTCCGTCTCCAAGGCAAACGCCCTCTTCCATTTTGACGGATATACGGTAAAATAGGTGCTGGATGCAGCGTTTATACGATGTTTTCCGCT # Right flank : TTCAACACGCCAAGGCCACCCAGGCCGCTGCGCGAGGCTCTTGCTCTATACTTTCCCTTACCAATGACACGTTTAACGGAGAGTGCAGAATCGATCTGAAGAAGCGGAGCGTTCGCCTTTATCCCCAGATTTCCTCCTTTGTAAAAATTTCAAGAAATCTGGGGATAACAGCGATCGGAAGATGATTCTGCATTCGGAGTGGTCCACGTGTGTGAAGGATGATCTGCGTGCCTGAGTGATCTACGCGTCTGAGCCTTCTCCATGCACGCACCCCAAAACAAAAACAAGCCCGCACTCCCCTTCCAAGAGGTGCGGACCCGTCCTATCAACCATGTACTGCATCCCAGCTAAAGAATCCATCCTCTACCTAAATGAAATCTCCCGCTAACGCACTCATACCAGCAGCACAACTAACCTGTGCCTTAAGGCTGCACCATCCGGTAAGCCTGAATGCGATCCAGATACAGACGGCTCTCCGAATTCACCCAGAACGTGCCGAC # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACTTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.90,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 55457-55888 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB898192.1 Paenibacillus massiliensis 2301065 = DSM 16942 D328DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 55457 32 100.0 33 ................................ CAATGCAGGCATGCAGCCGGGACAAGCTGCCGT 55522 32 100.0 34 ................................ TTGTCGAATGTCCTCTGTCACATATAACAACCTC 55588 32 100.0 35 ................................ CGTGATTTTAGAGTGCAGGTAATAATCATCAAATA 55655 32 100.0 35 ................................ ATATTGATGACCTTTAAACCCAAGAATCCAGACAA 55722 32 96.9 36 .....................G.......... ATCTTCGTCACGCATACGCATATGAGTCCATAGCAA 55790 32 96.9 35 .....................G.......... ACCTTTTCAGCATTCAACGCATGGCTACGGTCCGA 55857 32 78.1 0 ........A...........AC....G.TTT. | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 96.0 35 GTCGCACTCTACTTGAGTGCGTGGATTGAAAT # Left flank : GTGTATGGAGTCGCTAAGGGGCTCGCTATTCGAGCATGATGAACTGCGTGCATGTTATTCGTGAAGAGGCTTCGACTCGGAATTCGTGCATGATGAAGCTGCCGGCATGGTTTCGGGCGTCGTGACGCTGCGGGCTCGGAGGTTTCCTTCGATCGCTGTTAAAACCTGATTTATTCATTAGATAAAAGAGGTAGCGGTGTAAATAAGGTTTTAAAGGCGAACACTTCGTTTCTCCAGAAATCCTCCGACCCTCCGCTACTGCCCTTGCTGATGCTGTAAAATGCAATAGCTATACTGCACGATTGTTAGCTAGCTTTTGGTGCGAACCCCAAGCTCACATGATTTTCCCGGGGCATTCGCACCTCAGATTTTGTCGAATTCATGTCGAATGTGAATGAAATGTGTACACACATTTAAGAAAGTCGCGCTTATTCTTTATATTTTCACGCTTAAACGTTAGAATTAGGAGTACTAACAACTTGGTTAAGTTACTTTTTGCT # Right flank : TCAACTGAACAAACAACATTAGGTTCGATCTGCGATTAGTACTAATCGAGCTCCTTCATTAGCATTAATGCAACTAGTCCTCAGATATCACCTTCCTCACGGAAGATTTGCCAATCACCCTATTAACTGCACATGGTACAAGTGAAGTTATGACACGAAAGGAGCCCAGGGGATCTACCCTGAGCTCCTTTCCTCATTAACTATTATTAGCATGGTAACTCTGGTATTTGCTCTCACTTTCGCTGACAGAAGAACGGTGATCCATTAGAAACTTTTTTGAGCGTAAGCAAAATTCATTGTTACATCTTCATATGAGTAGAAGGTTCAACATTATAAATTGTTATAAGGCCGACATATAGTAAAATTAGCACTGTCAACACAACTCCAATTACAATAAATATTTTTTTAATACGAACCGCTCCTTCAGTTTATAGATTTGCGGCTCCTCCAGTAATATTGCCCGCTTTATTAATCTGGACCCACTGTTCTCTATTCCCAAC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACTTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTACTTGAGTGCGGGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.90,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 60624-61322 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB898192.1 Paenibacillus massiliensis 2301065 = DSM 16942 D328DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 60624 32 100.0 35 ................................ TCAGTGTGGTCTTCAAACTTCAGAGACTCAGGATT 60691 32 100.0 33 ................................ TAATGATACCATTTTAATCACCTCTATGATTTA 60756 32 100.0 33 ................................ TGCGTTGTTCCACAAGTAAAGCATTCAGCGCTT 60821 32 100.0 35 ................................ CAACTACACCAACACGAAGGGCGCTCCTGGACACA 60888 32 100.0 36 ................................ CTTGATGTCACGGTGGGAGATATCTTAGAGCACAAA 60956 32 100.0 35 ................................ TGTACGAAGTTACTCACTACCGCCGCCCCCTCTCA 61023 32 100.0 34 ................................ ATGGCCTTTTTGAGTAGACCAATCAGTGAATCGG 61089 32 100.0 34 ................................ AAAAAACCAATCATTTAACAATCTCCGTAAGCGC 61155 32 100.0 35 ................................ GTAACACTCCTAATGGTCCTGTTGTTGGCTATAAC 61222 32 84.4 37 ...........TG..A..............TA CTGGAGATAGCCATACCGGATTCCATGACAATTCGAA 61291 32 81.2 0 ...........TG..AA.T...C......... | ========== ====== ====== ====== ================================ ===================================== ================== 11 32 96.9 35 GTCGCACTCTACATGGGTGCGTGGATTGAAAT # Left flank : ATTGTTTCTGATGGAATGCTTACTGGCTTTACTATCGGCTTGTTCGGAGTGGATGGCAGATAGAAGGGCTTTGCCGGTTGGGATAACTGCAATGGGATACTAACTGGGCCTTCCCTCTGCTACCGCTGGTGCATCTGGTTGTTTTCTACCTACAAGTCAAACTCACATTGCTAGTGTTTGTGTGCTATTAATTTTGACCTAGAATCTTTGATGCACTCAGGGACATTGAAATCTGCCACGATTAATGGCCATGGCCAGAAAATTAGTAGTATGTTTATCAGAATAAATGTATATCCCAGATGAATTCTGTCCCCCTTCGGTGCGAACCCCAAGCTCACATGATTTCCCTGGGGGATTCGCACCTCAGTTTTTGTCGAAAACGAGTCGAATGTGAACAAGATTTGAACACGCTTCTAAGAAAGCAGCACTTATCCTTTTTATTTTCACGTTTATGCGTTAGAACCAGGAGTATAAACAACTTCGTTACGTTGTTTTTCGCT # Right flank : TGAGTTACAGATCGTTTCCGTGGATTCATCCGGACGTCGCACTCTACTTAAGTCGCTGGATGTTCTTTACCTTAATAACACCATTAGAAGGTGTAACTTCCTATCAACTACCGAATTATTATTAAAACACGCTAGAAAAAAGGGCTTCTTCTTCCCTTTGAACTGTGACCCGTAAAATGGACACCTTGAAAAAAGTGACCTCTTACGGGTCATTTCTGTTTGAATCGGAACATTAAGAGAATTGTAAGGTAACTTTCATGGGATTAAGAGCAGGACCTTCAAAGATTTTTAGCGAAGAAGAGACAACTCAAGCCGTTACCAATGGACATTAAAAAAGATGACTCCTGATGAATTCAGAAGCCATCTGTTGGTTACCTAAGCTGAGGCTTTATTCTCACCGGGCCCACAACTAGTCTACAGTGCATGTAATGCTAAATCAGCTTTTGCTGTATACTTTATTGTTTTTACGATAATTATTCTATTTTTGCAAGACATTGATA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 66019-67123 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB898192.1 Paenibacillus massiliensis 2301065 = DSM 16942 D328DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 66019 32 100.0 35 ................................ TTATTTTAGTATACATAATATCTAATGAAATGCCT 66086 32 100.0 35 ................................ TTTCAAGATGATGCAACATTTAAGCTCAATTATAA 66153 32 100.0 36 ................................ TACCTCAATATGGAATAAATAATATTAAAGTAGATT 66221 32 100.0 36 ................................ TCCTAACCTAGAAAAAGCTAGTTCTGGAATGTTAAA 66289 32 100.0 35 ................................ TATGCTTTGGTTACGCAATTAGCAGGAAGAAGCTT 66356 32 100.0 35 ................................ TGATCGGCAACGGGGCCAGAATCAAGAGCAGTAAC 66423 32 100.0 35 ................................ CAGCTATGGGGCAGGAGCTTGTCAACCGTTCGCCT 66490 32 100.0 34 ................................ CTTCCATGTCGAAAGCTCCCTTCATAAATTAGTT 66556 32 100.0 35 ................................ ACGGATAGCTCTTCGGGTCGTCGCGATCCACCATG 66623 32 100.0 35 ................................ TGAGCGACTGCGCTCCCAAGACTCTCCAGTAACGG 66690 32 100.0 35 ................................ ACGGATAGCTCTTCGGGTCGTCGCGATCCACCATG 66757 32 100.0 35 ................................ TGAGCGGCTGCGCTCCCAAGACTCTCCAGTAACGG 66824 32 100.0 35 ................................ TCCACTAGTGGAGAAAAGCCAGATTACATTCCTGA 66891 32 100.0 35 ................................ ATTGATGTAATTGATACGGAGACTTACGAATCAAG 66958 32 100.0 35 ................................ CCGGTTGCATTCGTATTACCTTTGGGCGCTCCCCT 67025 32 100.0 35 ................................ CCGAGTGACCGCTACCCTGAGACTGCTCAGCACAT 67092 31 87.5 0 ..........T......C......-..C.... | T [67122] ========== ====== ====== ====== ================================ ==================================== ================== 17 32 99.3 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TAATGTAGCCTTTAATTGATTCGACCAAAAGTATTCCACGCTCCTACATCGTTTCCGTCTTATATTAGGACGTTATCAACATCTTACTCCCTTTGGATAATTCGGTCTACTACAGAATAGCCTGCCTGCCCATCCTCTCTATACGTACCCTTTGCTTTTCTCTGGCTGTTTTTATCTGAGTTCCGGCTTCCGTTTATGTCTTCTTGCCATGGCGACGCTCACCCCTTGGCTAGTGATCATATTTTGCCCCCCACTACTAGAACTCAACTTATAGTCAATATCGCAGCCCTTGGATCACTCCAAGCAAGTAACCACTTCGGTGCGAACCCCAAGCTCACATGAAATCCCTGGGGGATTCGCACCTCAGATTTTGTCGAAAACGAGTCGAATGTGAATGAATTGTGAACACGACTGTGTTTTAAATCGTCTAAATGCCTCCAATGTAATGGATATACGGTATAATAGATTCTGGATACATCGTGTTTACGCTGTTTTCCGCT # Right flank : TCTCCTTTTACGTGGAAACAGATGACGAGACGATAACCGCAATCTTGGTATAGAAAGAACTTACACGCGCCGATGCAGCGGAGGGTCGGAGGATTTCTGGAGAAACGGAGTGGTCGCCTTTCAAGCCCGATTTCGACTACGCTGACTTTGATCCATTCAGGAAATCGGGCTTGAACAGCGATCGAAAGAAACCTCCGAGCCCGTAGCGATTCCCTCAGAGAACAAAGTCATTTAACAAAATCATTTAGGTAGCCTATCTCTTTTAAAGCAACAGACGCTTTACCAACCCCCTCCGTTCGTGGTATTCTGTTACCAAATAACTTGAAACGCTTTGACGGGACCAGTAAGAGTACATGCGGTGCTCAGAGAGTAAATTCCACAGGCTGAGAGAATTTACCATCCGTATCCTCCGAACCCTACCCCCGAGCGGCCTGCACAGCAGGACGTTACCTGACGTTACAGGCAGAGTCGGATGATATTCATCATCAATAAAGGTGGTA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //