Array 1 20292-19896 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABGO01000078.1 Gemmata obscuriglobus UQM 2246 gcontig_1106221706121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 20291 29 100.0 31 ............................. TAGTCCCGGACCTGTTGCTCAGTCGCGAACC 20231 29 100.0 33 ............................. ATCGACGGCGTGGCGGCGGTGCCCGCGATGTTC 20169 29 100.0 32 ............................. AATACGTCGACTCTTTGTCGGAACAGCACCGC 20108 29 100.0 34 ............................. GCCGCGAAGCTGCCGGCGGCGAAGCACGAGACGC 20045 29 100.0 32 ............................. AGGGCGTCAGCACCAGCACCTTCCGCCTCTGG 19984 29 96.6 32 ...........................A. GTGGTGGCGGACTGGAGCAGTACGCTGCTGGT 19923 28 89.7 0 .......A...........T.-....... | ========== ====== ====== ====== ============================= ================================== ================== 7 29 98.0 32 GTGTTCCCCACGCTCGTGGGGGTGAACCG # Left flank : ATCCGCCTTGACCTCGTCGCAGAGCACGATGTCCGAGGCAAGGAACGCAAGCGAGTCCATGCGCTAGTACGGAATGAGTGCCGCCGAGGCGCTCGGGCCGTAGCAGGCGAGGAACAGGAAGGGGAACAGATACTTCATCATCGCCTCCGTGAGGGCCGTTAACAACTCCACAATGATGGTCCGGCCCTCACTGGTCAATGGCAACGACGGTCATTTACGCGTGGCGCCAAGGCCCACGCTCACCCCTCCAGCCCGGCCGCGCGGCGCCCGCACGCGATGCACGCAGCGGACCACGACTGCTCGGCGCGCTCGTGATTGGCCCACACCTTGACATCTCGGTCCGCGGAGCCGGTCCCGGTGTCTTCTTGGTCGGCCTCCAAGAGCGGGTAGATGTTCACGGGGCAGCCGCGCCGCCATGTGCAAACGGATTCGCGGTCCGCACCTTGGTCGAGGCACCCCCACAGGTCCGTGAGTCGCATCCGGACGACCGGATGGGAGGC # Right flank : GCCAATGACACCTACGCCAAATGCGCTCTCGGGGCCGCAGCCTGAATGCCAAGCCCTGCGATTTTCGGTGGTGTCCTGTTCGTCTTGTATGCGGCTACTGATGCGTGGTAAGTAGTTACGCTGTTCGGTCGTGCTTTTCCCTCGCGCGTGTTGGGATCGGTCATGGACGATCTGAGTCGGTTCTGTTGCCGGAATGCGGATTGCCCGGACCACGGGAAGCGGGGGCACGGGAACCTAACGGTGCCGGCCCGATACGGCCCGAGCAACACCCGGGTGCTGCGGTGCTCCACGTGCAAGGCCCGGTTCTCGGAGCGCAAGGGCACGCCCTTGTACGGCACCCGGTTGTCGGCCCAGACGGTGACCGCGGTGCTGGCCCATGTGGCGGAGGGATCCGGCACCCGCAAGACGGCCCGATTGGTCGGGGTACATCGGGACACGGTCACCCGGTACATCCGTCAGGCCGGCGAGCAGGCCCAGCAACTCCACGACGAGTTGGTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCTCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.60,-11.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 188529-195888 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABGO01000001.1 Gemmata obscuriglobus UQM 2246 gcontig_1106221703457, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 188529 36 100.0 36 .................................... AAGACGCTCCCGACTGCGGCCCTGTCGCTTCACCCC 188601 36 100.0 35 .................................... ACTTGGAAACAGCGCAGGTCGTCATCGACCTGCGC 188672 36 100.0 35 .................................... GCCGTCTTCACGATCGCGGGCACGTCGGCCGTGGT 188743 36 100.0 35 .................................... CACACCGCCGCGACCACACTCACCGTGCCGGGGAT 188814 36 100.0 36 .................................... TTGGTGCCGGCCTCGAACTGCGTCACGAACCCGAGC 188886 36 100.0 35 .................................... GCCGAGTTGTTCGGCCGCTTCGACTTGGCTGACCT 188957 36 100.0 37 .................................... CCCTCCACGGCGGTGGCGTCAGCCCCGCTGGTCGTGT 189030 36 100.0 35 .................................... TCGAGCGGGGTCGGAAGTGCGCCGCCGATCAGAAC 189101 36 100.0 37 .................................... TGCGGCGCGCCGACGCTGTGTGCGCCCAGAACACAAG 189174 36 100.0 35 .................................... TCCGGGTCCGTGCCCGGAACGCCCAACTCGCATAC 189245 36 100.0 37 .................................... ACCTGTACAGCGTGCGGCATCGGCCCCGCAGAGCCGT 189318 36 100.0 34 .................................... AACGTGAAGGGCAAGCTACTCACGTGCGTAACGT 189388 36 100.0 35 .................................... AGCCGGCCCTTGTACCCGGACCCGCTGTCGGACCC 189459 36 100.0 35 .................................... GGCCGCGACCGGCGCCACGTCGCCCAGTGACGCAC 189530 36 100.0 35 .................................... TTCCCGATCACGTCCGCCAAGCTCGCCACCCGGTT 189601 36 100.0 38 .................................... AGTAACTGGGTATCAATCGTCACCACCGAAGGCCCCGC 189675 36 100.0 38 .................................... TTCCGGGGCTTGCGGGCACGGGGCTCAAAGTCGAAGGT 189749 36 100.0 37 .................................... CTGCGTTCAAGCAGCACATTACCCGTGTGATGGGCGC 189822 36 100.0 35 .................................... CTCCTCTGCGGTGTCCTCGTGCATCGCGTGTGCCT 189893 36 100.0 36 .................................... ACCACGACCACGCAAGACATCTGGGCGGACGGCGCG 189965 36 100.0 35 .................................... TTGTATGGCCGCGCAGAACAGGGGATGTCGTACCG 190036 36 100.0 38 .................................... TTCGGGTAGGACGGCGCCCCGTCCTCGTCCTCGACGGT 190110 36 100.0 36 .................................... TCGGCACCGACCGGAACCGCGCGCAGGGGCTCCGCG 190182 36 100.0 34 .................................... ACGGGCCGGCTCTCGTACTTGGCGAAGTCGCGCT 190252 36 100.0 35 .................................... ATGCACCAAATCGCTTTGGCCCGACCGCTATCCGG 190323 36 100.0 36 .................................... CCACTTCGCCACGGCCAGCGCCCACGCGGTCGGCCG 190395 36 100.0 35 .................................... GTAATAGTCCCAGCACTCCGAGCAGCCAAGATATT 190466 36 100.0 35 .................................... AACAACATCCGCAAGCCCCTGCCCATCCCGGTCGT 190537 36 100.0 37 .................................... CAAGCCCGGCTCGGACGACCCATCACCCTGAACGATC 190610 36 100.0 34 .................................... TTATCCACGCCTGGAACTGGGTCGTGTCCTTGCC 190680 36 100.0 35 .................................... ATATCTGACTGGTTGCCGAAAATGAAGATTAGGGT 190751 36 100.0 36 .................................... TCCACTTGTTCTTGGTTGCAACTTCGAAGATTTGAT 190823 36 100.0 36 .................................... GTGACCCCGTAGGTGGAATCTTGGGTGCTGTGGACC 190895 36 100.0 36 .................................... GCGTCGAACATCCGGGTCTGGAACACGGTCGAGATC 190967 36 100.0 34 .................................... AACTGGTCGAGCGGCGCCGGCACCGCGAACGCGC 191037 36 100.0 38 .................................... GGCCTGAGTTGGCTAAACGGTGGAGTGGGGCGTGGGGT 191111 36 100.0 36 .................................... CCGTCCCGGAACAGGATGCGGGGCACGCCCTCGTCG 191183 36 100.0 34 .................................... TGGGGCCTGCTGTTGTGGCTCTCGCACCGCGGCG 191253 36 100.0 35 .................................... TGTGCGCGGCGGAAGCGCGTACAAATTGTGTGCTC 191324 36 100.0 36 .................................... GCGCGGTACTCCAGTCTAACCCTGAAGCGGGTGCGG 191396 36 100.0 35 .................................... TGATTGTGGACCTGAGCAGCGTGGCGTCCGCAGGT 191467 36 100.0 35 .................................... CTCTGCCCCGCCCGGGGAACGCGGCCGGTCGCCCA 191538 36 100.0 47 .................................... GGCCCAAAGACTAGAAGCACGTCACAGCCCGGCCCGGGCGAAACCAG 191621 36 100.0 35 .................................... ACCCGTTCTGGAGCACGCTGCGGCCCAAACACGAC 191692 36 100.0 34 .................................... ACCAGCGCCAACGGACGGTGCGTGAGCCGGTGCA 191762 36 100.0 38 .................................... TACAGCGCCGCCAGCGTCACCCCGCTCTGGGCGAGGCC 191836 36 100.0 37 .................................... CCGGGGTTCTTCGCGGAGAAGATCGCGCGGCACCGCA 191909 36 100.0 35 .................................... CGGTAGGCCGGCTGCTCGTCCGCCAGTGTGCCCCG 191980 36 100.0 38 .................................... AGCGCCACCGAGCGGGAGAACGTGTGGGAGTGGTGGAC 192054 36 100.0 33 .................................... AAAATGCTTTCCTTGCTACGCCGAATATGTCGG 192123 36 100.0 36 .................................... GACGAGGCCGTGGCTCGGTACTATCGGGAACGCAAC 192195 36 100.0 36 .................................... CAAGCGGGCGCGAGACTGACGCGGGCGCGGGCGCGG 192267 36 100.0 33 .................................... GCCTGACGGGTCGAGCGGCGGTCGGACGCGAAT 192336 36 100.0 36 .................................... ACCCACGAGACGCGGACGCAACGCCGCTACCCTGGT 192408 36 100.0 35 .................................... GTGTCGCCGAGCTGGAATCGATCCTGGCCGCGGTG 192479 36 100.0 37 .................................... GTGGCCCGCGCAAACGGGTCCGGGGGCGACTGCGCGC 192552 36 100.0 35 .................................... GCGAGAGCGGAGGGCGGCGGAACCGTTGGCACCGT 192623 36 100.0 34 .................................... ATAGCCTGAGCCCACTTAGGTAGATTGTTGATGT 192693 36 100.0 35 .................................... TGCTCCCGATCCACCTGACAACGAGGCTCTCTGGT 192764 36 100.0 36 .................................... CGGGACTACAATCGGTGGGCTTGGGTGGCGGTTGGT 192836 36 100.0 35 .................................... ATAGCCAAGTGGACCGAGGATAAGAGGGCTCCCCT 192907 36 100.0 35 .................................... ATACCCGTTCGATTTCACACTAACCTCGACCTGAT 192978 36 100.0 36 .................................... CTGTGCCTGAACGGCAACAACGGCATACCGTCCGGA 193050 36 100.0 35 .................................... CCCAAATGCCGCATCGCCAGGGCGAGCGCGGAGAC 193121 36 100.0 34 .................................... AGCGCACCGCAGTGGTACGTGTTCCGCTGGGGCA 193191 36 100.0 35 .................................... ACCGTAATATCAGACCGCGAGGGCAAGCCCGCGGC 193262 36 100.0 34 .................................... GCAGTGATGGCGGACCGGTACGAGCGGGGGCAGG 193332 36 100.0 38 .................................... GCTCGCCCGGCCAAACCTCACACCACCGCGGCAGTCCT 193406 36 100.0 35 .................................... GAGCGGCTCGCGAAACTCGACTTCGCCGCGGTGGT 193477 36 100.0 37 .................................... TGCCACGTTGCGGACGTTGCGGGAGGCATGCCCCGAT 193550 36 100.0 34 .................................... CTTCGTATTCAAGGACGAGCGAAAGTACCACTGC 193620 36 100.0 34 .................................... GCGGGGGCCGGTTTGTACTCGCGCGACGACGAGT 193690 36 100.0 36 .................................... TCCGTCCCCCCGGCCGGGTATCCGGGGGCACCTGTG 193762 36 100.0 35 .................................... ACGGTGCTGTGGGTCGACGGGTTCCGGGTCGGCAC 193833 36 100.0 34 .................................... CGGGCCATGTTCCCGATGGAGCCCGGTACGAAGT 193903 36 100.0 35 .................................... GCGTCATGTCGCGGTCGAGCGGGTCGTTGTACGGG 193974 36 100.0 38 .................................... AACTGGAGGTCGTAGGTGCCCTGGTACGGGTCGGTCGC 194048 36 100.0 36 .................................... GGCATGATCGCCCGCATCGTGGCCCCGCTCATCGCC 194120 36 100.0 35 .................................... GACGCGGGCTACCACCCGGTCATCGCCCTGCCCCT 194191 36 100.0 37 .................................... CTTCGCTCGGCGAAGCAGATCCGCGCGCTGGCGCCGT 194264 36 100.0 35 .................................... CAGCGGGTGGTGAACGAGTACTACGGCATGTTCGT 194335 36 100.0 36 .................................... GACTGGCAGGTGGGGCACTGCGAGGTGAAGCCCGAC 194407 36 100.0 36 .................................... GCCCGCGACCGCGAATCGCTCACCCGGGGCGAGCGG 194479 36 100.0 35 .................................... ACAGCCGAAGCGGCCCGCGTACGCGCGGCCCTGGA 194550 36 100.0 34 .................................... GGCACACCGGACCCCATCGACAGCAGCCGATCCG 194620 36 100.0 38 .................................... TCGTCTTCTTCGGGCTCTCGCGGCTCTTCCTCCTCGTC 194694 36 100.0 36 .................................... CTTCCACTTGACGATAACTGCCGTCCGGCTGACGTT 194766 36 100.0 35 .................................... TGGTGGCGAAGGCCCGGCAGGCGCGGGCCGAGGGG 194837 36 100.0 36 .................................... TAGATCAGACGTGAAATGGGAAGTGCGAATTGAGGT 194909 36 100.0 35 .................................... ATTCCGAGTTCGACCGCAACGACCCGCCGCACGCC 194980 36 100.0 49 .................................... ATGGCGTCGTAGTGCGACTTGGCCTTCAGCACGGCGGTGCTGACGCCCT 195065 36 100.0 36 .................................... ATGCAGGCGGCCATTCTGGACGAGTTGACCACAAAG 195137 36 100.0 35 .................................... AAGCAGCGAATCATAGCGGGCACACAAACCCCGAT 195208 36 100.0 37 .................................... CCGAGGCGGACCCGGCGGTCGGTCCGGAGTCGGTGCT 195281 36 100.0 35 .................................... CCCGCGGCGCCGAGCGAGACGAGCTGCGGCGGGTC 195352 36 100.0 36 .................................... AACTTGAGGTGCGGGTGGTCCCACACCAACTCCGGT 195424 36 100.0 36 .................................... CGAACCCTGTGCCGGAGTCTGATCGCCCCCGCCGTT 195496 36 100.0 35 .................................... TCGTCTCGTGCCGGGTGTTTCCTCTCCACATCCTT 195567 36 100.0 35 .................................... TCCTGCCCGTGGCTGGAAACGGCACCTTCGATCAT 195638 36 100.0 35 .................................... GCGGCGGTGGGTCAACGGAGGGCGCGGGCGTGACG 195709 36 100.0 36 .................................... GGCTATTCGAAGGGCTGATGCAGTCCGACGGGCACG 195781 36 100.0 36 .................................... TGACCGCGACGGCCCCGCCGAGCCGGTCTCAGCCCG 195853 36 97.2 0 ......G............................. | ========== ====== ====== ====== ==================================== ================================================= ================== 103 36 100.0 36 GTGCAGACTTCAGTGACGCCGTGAGGCGTTGAGCAC # Left flank : GTGCGCCCGGCACATGGAGGGGTACGGGGAGCGGGTCCAGTACTCGGTGTTCCGCTGCTGGATGAGCCAGACGCAGGTGGAGCGGCTCCGCTGGGAGCTGACGCAGTTGCTCGCGTCCGAGGACGAGGTGATGCTGATCCCGCTGCCGCAGGCCAGCGTGGACGGGATCGTGGGCATCCACGGGTCGGACCGCCCGCCGGAGTGGACCGCGGAGCCGCCGCGGCACCGGATCGTGTGAGCGCGAGGCCAATAGAACCGAATCACGCACCCGCGTGTGTGTGCCGGGTTCCATCATGGGACCGATCCAAACCTGAGTTGCGGTCTGGGTTTAACGCTCTTTGACAACTCGCCGGGGTGCTTGACGGCCGTCTGGGCCTTAAAATCCGTGTGAAGCGTGCCGCGCGTGGTTGGTGTCGGTCGTGCGGTCACGATCGGAGCGGTGTGGTGCGTGAAAACGGTTGCCCGGCGCGGCCGATTTTGAGCATTTCGGTAAGTGAGCG # Right flank : CCTATTGCGCGTACTACTTACGTCCCCCCGTTGATGCTAATAACAGGTCATAAGATGGCACATCGCAGACATCCCAAAAATTCCTCTTTTGATGGAAAAAACACAGGCAGCTAGCGACATTCAGATACAGCAACCAAGTACAAAAACTAGTCTCATCGAGCAGTCACTACTGATAAACGTCTGATTCGTGGTGTACCTTTCGTTTCGGGCGAAGCAAACACAGCTACGCTGAACGAACAAACCAGAACTCCGGCAAGAAACAAAAGAGGATTCTTTCCCATTTTTACGACGGGTTAGCACTAACCGAAGCCGTAAATTCGTACGACTACAAGAGACGCAGTAACTGGGACAAAATTCGCAACAGCAACTGAATACAGAATGTGATGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCAGACTTCAGTGACGCCGTGAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 11624-25280 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABGO01000047.1 Gemmata obscuriglobus UQM 2246 gcontig_1106221720745, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================== ================== 11624 36 100.0 35 .................................... GTGACGTGGGGCTCCATCTCCCGGCCACGATCCGC 11695 36 100.0 36 .................................... CTTGTGGCTGAACTTCACGTTGGCTGCCAGCCACGG 11767 36 100.0 36 .................................... TTCGCATGGCCGGGAGGACGCATGAGCAACGACGAC 11839 36 100.0 35 .................................... GTGCTCCCGGAGCCCACCGGCCGGTGCTTCGCCAT 11910 36 100.0 38 .................................... AAACACACCAGGGAAGGGGTGACGGTATGAGTTATCCG 11984 36 100.0 36 .................................... CTCGACCCGCACCCCCTCTTGGATCGTGTCCGCGTT 12056 36 100.0 38 .................................... CTGGCCCAGTCCGGCCGGATGTTGTGCAGCCGATCGCC 12130 36 100.0 36 .................................... GCCCGGCCCGTGCTCCCGTGCGGCCCGGGTCAGACC 12202 36 100.0 37 .................................... TCTGCTTCGCGTCCTCCGGGCTGTCCGCCTCCACGCG 12275 36 100.0 35 .................................... GTGGACACCCACGAGCCGGTCGTGCTCGTGGTGTC 12346 36 100.0 36 .................................... CAGTGCCCGCACTCGGCGTAGATCGGCTCACCGTCC 12418 36 100.0 36 .................................... GTAGCTCCGGCAGTGTCACAGCTTATCAACATCTCA 12490 36 100.0 37 .................................... TCGGCTCGCGGGCGCGACGATCTTGCGCGCGATGTAC 12563 36 100.0 37 .................................... CGGGTACAAGCGGCAGATCGACTCGCGCATCGTGCCG 12636 36 100.0 38 .................................... CGCAAGGGGTACGGGTGGCAGGCGTGCAAGCGGGGCGC 12710 36 100.0 37 .................................... TGCGGTCCGTGCCCGACGGCCCCCACTCGTCGCCGAA 12783 36 100.0 39 .................................... TCCTTGATCGCGGCCCGCACCAGCGGCGTGAGGGGCACG 12858 36 100.0 36 .................................... GACCTGGTTTTCGCTGACCCGGACGAGTCGGCGGGA 12930 36 100.0 36 .................................... CATCCTGAAGTGCGTCGGATCGACGTGGGATTGGGC 13002 36 100.0 39 .................................... TACGCTCTCGTCCCCGCCGTTCTGCTCGCCCTCCTGACC 13077 36 100.0 37 .................................... CCCACCGATTCGGCGGCTTGTCGCCCCGCGCCTTGCG 13150 36 100.0 42 .................................... CGCGGCTCGGTACGGCATGGCACGGCTGAGCGGGGCATGGGC 13228 36 100.0 37 .................................... AATGAAAGTCCGGCCGTCGAGGATCGGGGTGAGCAGG 13301 36 100.0 38 .................................... GCCGTCGAGCGCTCGCTGGCGGCCGAGATCGCGAGCCG 13375 36 100.0 38 .................................... CAGGTTTTGGGCCTCGTCGCCGATAACGATTTGCGGTC 13449 36 100.0 35 .................................... TTGGTACGGAACGCATTTCAGCGGAGGCTTGTAGT 13520 36 100.0 36 .................................... ACGTTAAGGCATCATCAACGTCCTCAACGGCTCTCG 13592 36 100.0 38 .................................... CTCAGTGTTGAGGTTCACATCCGGGACGGCCCCGACGC 13666 36 100.0 37 .................................... CGGCGTAGATCGCCGGGTCGTCACTGCACCCCCGCGC 13739 36 100.0 36 .................................... GGTGCTGGACCGGCTTGACGAGGTCGTGGGAACGGC 13811 36 100.0 36 .................................... CCGACGATCGCCCATCACGCAAACGACGTGCTGCTT 13883 36 100.0 38 .................................... GCGCCGCCCGGCGTGGGCGAGCGGCGGAAGCGCGGGGA 13957 36 100.0 37 .................................... AGGAGCACGTGTGGGTCGCGGGCAACCTCGACTTCGC 14030 36 97.2 37 ..........A......................... TGCCCAGGTTGCGGTACAGCGGGTGCGGATCACGGTA 14103 36 100.0 37 .................................... GCCGCCGACGATCGATACAGCCCTGGACAAGGTAGCA 14176 36 100.0 36 .................................... CGACGCCCTCGGGAAGCTCGCGAACTACCTGGGGCT 14248 36 100.0 37 .................................... GCGGCAAAATCGAGATGCTGAGTGCGGACGGGGTGTC 14321 36 100.0 36 .................................... CTCCTCCGGCTTCACGCCGCTCGCGCTCCCAATACT 14393 36 100.0 37 .................................... CGCTGGCGCCCGTGACGCGGCGCTTCGAGGACATCGT 14466 36 100.0 36 .................................... GGTCAGGCTGGGCACCGCCGGGGGCAGCGCGGTCGG 14538 36 100.0 36 .................................... CCTCCGAAGCCGGTCAAGCCCGCGGCGCCACCGCCG 14610 36 100.0 42 .................................... GGTGAGCGGGGTGCGCCACCACGGCTGGCCCGCGTTCCGCAT 14688 36 100.0 36 .................................... GGGCTGGTGCAGGGGTTCGCGCCGCCCACGCAGCAG 14760 36 100.0 37 .................................... CGGGCTGGTGCAGGGGTTCGCGCCGCCCACGCAGCAG 14833 36 100.0 36 .................................... GGAGGCGCGGCGGCTCACCGGCATCGAGCGGTACGG 14905 36 100.0 36 .................................... CCGTTCCTCGCGCAGCACGCGGTGAAAGTGCTCGTG 14977 36 100.0 36 .................................... GCCGATGGTGGCCTGAAAATCGCGCATGGCCTGTCC 15049 36 100.0 36 .................................... GGGGCCGTTCGCGTGCCCACTGAACGAGTGCGAGGA 15121 36 100.0 36 .................................... GTCGGTGAGCGAGGCGATGTCGCGCGGCGTGAGGCC 15193 36 100.0 36 .................................... AGGGCCGGACGGGGAACGTCCCCGCTCCGGGTATCA 15265 36 100.0 36 .................................... CTCGTGTTCGTAAAGCAGGGCGGCTTGGCGGTTGGT 15337 36 100.0 37 .................................... GCCGCGGCCCGCCGAGTGGCTCGCGGTGGTGCCGGTG 15410 36 100.0 38 .................................... CGCGGCCGGGTGGGAACGCGGCGTACATCGAGCACCTG 15484 36 100.0 38 .................................... GCGATGGTCTCAAGATGCTTGCAACGACGGTGCGACTG 15558 36 100.0 37 .................................... TGCTGTCCCCGCGCCCGGTGCGGATGGTCCAGTCCGT 15631 36 100.0 36 .................................... CCCCGGGCACGCTGTTCTCGTTCTGGGGCGGTGGCG 15703 36 100.0 37 .................................... TCCATCCCAGTGCAACGCCAATCGCGACGCCCGCGGC 15776 36 100.0 36 .................................... GCTGGCCCCAGGTTGCCCCGTGGCGTGCCACGAACT 15848 36 100.0 37 .................................... CGGCAAGCCGCTGACCCAGCCGTTCGACCCAACGACG 15921 36 100.0 37 .................................... ACCCGTCCAACAGTTCGGCGGCCTTGCGAATGTGCCC 15994 36 100.0 38 .................................... GACGAGGCGGCGGTGGAGATGTTCGCGGACAAGGTGCT 16068 36 100.0 37 .................................... GACGGTCAACAGCGACCCGGGCCCGGCGAATTCGTAG 16141 36 100.0 35 .................................... TCGAAGTTGGCGCCCAGGGCCTGGGGTGCGGCCGT 16212 36 100.0 36 .................................... CCAGAGCGCGAACACGTTCGAGGTCCGCAACAGTTC 16284 36 100.0 36 .................................... CTGACGCTCCCTGAGGTGTCGAGTTTCCGCCGCGGC 16356 36 100.0 38 .................................... TTCATCCTGCGCGAAGCGGGCGACAGCAAACGATGCCC 16430 36 100.0 36 .................................... GGTGGCGGTGGGTACGAAGTGGAAGATCTGGCTAGA 16502 36 100.0 38 .................................... GTGGCAGCCCCAATAAACCCTCGCTGCATGGCTGCGTG 16576 36 100.0 42 .................................... CCCTCGGGACCGCCGGCAGTTTCGGCACCGCTGCGCTGCACC 16654 36 100.0 36 .................................... CGAGGCGGGCCGGGTCGAGGACCGCGAGGAGCTGAC 16726 36 100.0 36 .................................... GCGAACGATCCATGTCATCATGTCCGCAGTGTCGTC 16798 36 100.0 35 .................................... CTTGCACGGGACATTCGGCCATTAACACACCACTG 16869 36 100.0 35 .................................... TTCGCTGCGTTACAAACTTGGTTTGACGTCCGGCT 16940 36 100.0 36 .................................... ACGATCGCACCGTTCAAAACGCGCTTTCGAAGGCCC 17012 36 100.0 35 .................................... ATCGAACTGAACCCTGCGTATCACGAACTGATTCG 17083 36 100.0 36 .................................... GCCGGTGCGGTTTGCGGCCTCAGAGAGCGGCCCCAG 17155 36 100.0 36 .................................... CAACGCCCAGGTGCGGATCGGGGTGCTGATGGCCAA 17227 36 100.0 38 .................................... CACAACGCCCAGGTGCGGATCGGGGTGCTGATGGCCAA 17301 36 100.0 35 .................................... AGGGGTTGAACTGATTTGGATGGTCATTAATCGCG 17372 36 100.0 35 .................................... ATGGTGCGCCTGCCGGAGGCGTACCGGGACAGGCT 17443 36 100.0 36 .................................... CGGGCGGACGCGCGGCACGCCGCGCGGCAATGGATG 17515 36 100.0 36 .................................... GAGCGTCACGTCCTGGTGAGCGCCGGCGATCGCCTG 17587 36 100.0 34 .................................... AAGGCGGTTCCGCCGGGGACCACGGGCCGCGCAT 17657 36 100.0 35 .................................... CGCGGGGCTCTCACGTGGCCGATCCCGTCAGCGCC 17728 36 100.0 37 .................................... TTAACTGAATCCAATCATTAGGGAGAGCGTGCGGGAG 17801 36 100.0 38 .................................... CCGGGGTACGCGCCGTCGTCGTCCGCGAAGTAGTCCGC 17875 36 100.0 35 .................................... AAAGATTCGTTCGCGATCAAATCGCACCGCCTGAT 17946 36 100.0 35 .................................... CCGCCCACCTCGGAGACTCCCGCGTGACCCGCGAC 18017 36 100.0 37 .................................... GCCCGTTCCCGCGTCGCCGATGCCGGCCCCCGCGCCG 18090 36 100.0 38 .................................... GTCTTTCAGGCTCATGCGGACATCCTGAAAGTGCAGTG 18164 36 100.0 36 .................................... ATCCGTAGACGTAAATAAAGATCAGGTCGCGGCCCG 18236 36 100.0 38 .................................... TCGATCTCGACGCGGCGGACGGCACCGCGGAGTTCGCA 18310 36 100.0 37 .................................... TCCGCTGGGTCAAGACCGGCACCGAGCAGGGGGCCGA 18383 36 100.0 39 .................................... CCCGGCGGGGAACGTGGTCCGCATTGAGGTGCGGTGGAT 18458 36 100.0 36 .................................... TCGTAAGCGGCCCACTGCTCTCGCGCTGCCGCCACC 18530 36 100.0 37 .................................... CCGACACCGACCGGCTGCGGTCGCTGCTGAGCGACCT 18603 36 100.0 37 .................................... GCGCCCACCAGTGCCCGGCCTACTTCGATCCGAGAGC 18676 36 100.0 37 .................................... CTGGCTGTGTGCCGGTCTGAGCGACTCCCCACCGCAC 18749 36 100.0 36 .................................... GCAACCGGGTCGGTGAACGTGGCGGCATGAGCAACC 18821 36 100.0 37 .................................... GGCTACATTGGTTGTCGAATTAGTGCCGTTCTTTAAG 18894 36 100.0 35 .................................... CCGCGCTCCAACGGTAGCACTGTTCGAGCCCGCGT 18965 36 100.0 36 .................................... CGGGCTGCTGGTGCTGCGAACCTCGGGCCAGGTGGT 19037 36 100.0 36 .................................... TTCCGGTGACCGCCCGAGCTATTACGTTTCCATCAT 19109 36 100.0 36 .................................... CTTCCGGTCGAGAACGCCCCCGCCGCTCCTACCGCG 19181 36 100.0 36 .................................... AACCTCATCTCGCGCATCAACGCCTCACCCGAATCG 19253 36 100.0 36 .................................... GCGGGGGTGGACGCGGGCGGAGATACGGAAGCGGGT 19325 36 100.0 38 .................................... TCCAGCGACCCCGCCATCTCAGCGCCCCGTGAGTGAGT 19399 36 100.0 37 .................................... CCGTCACAGGCGCGGGCGAACGAATGTACGCCCCGGG 19472 36 100.0 38 .................................... CCGGGTGGTCCAGGGGTACCGCCCGAACGGCGGGGCCT 19546 36 100.0 37 .................................... TTCAGAAGCTCCTTACTGCCGTCCTCGTACTTGGAGC 19619 36 100.0 34 .................................... TACAACTTCTGGGCGGAAATCCGCGGAGTTCTGT 19689 36 100.0 49 .................................... TCATCGCGGCCCTGGCCCGGGTGTACGGCCACGCGCACGGGACGGTCGA 19774 36 100.0 36 .................................... GGCGCGGAGCAGGTTCAGCTCCACTTCCGTGCGGTA 19846 36 100.0 35 .................................... GCGGCGCTGGTGGACGCGGCCGGGTCGCACGTCTG 19917 36 100.0 38 .................................... TTCTCCGCGGGACTCATGCCGGCGAGCCGGAAGCCGAA 19991 36 100.0 35 .................................... GCTGCCGGGCGAAGACAGCCAGACCGCTTTTGGCC 20062 36 100.0 35 .................................... CGCGCGACTCGCAAACCCCGGCGTGCCGGACTGCG 20133 36 100.0 37 .................................... GCGACACCTCGGGGTAGTCGGCCGCGAGAAGCTCGTT 20206 36 100.0 35 .................................... ACGTCCGTCTGAGGTGCGACATGCCCGCGTACATC 20277 36 100.0 38 .................................... TCGATCGCGGTGTCGTGGGCCGAGGAGAAGGCGAGCCG 20351 36 100.0 37 .................................... CACCTCGCCCGCGTACCGCGAGTGGCAGGCGAAGGCG 20424 36 100.0 39 .................................... CAGGACACCACCGTCAACGAGCTGTGCAAGCGGTACATG 20499 36 100.0 40 .................................... TGCGAGCCTGCGCTGAGGGCGAGACGGTGACGATCACCGG 20575 36 100.0 36 .................................... CCGCACGAGCACCTGCGCGGTGGCAACGGGGATGTC 20647 36 100.0 36 .................................... GACCGACGCGCAGAAGGCGGCCCTCCGCGCCCACCT 20719 36 100.0 36 .................................... GTCAGCCACCCCGTGCCCCCGGCGGCGGTACATCAG 20791 36 100.0 39 .................................... CGCGGGCGTTCGGTCGCCGGGGTTGTCCCCGCACGCGGC 20866 36 100.0 37 .................................... AACCAAGGAGACGGAGATGCCCCGGAATACGGACGTG 20939 36 100.0 36 .................................... ATGGGCTCTCGACCGCGATTCGTGCAAATGCTGCGT 21011 36 100.0 36 .................................... GCCGTCGTCGGTGTGGGCTGGGTAGGAACCCCGGTG 21083 36 100.0 39 .................................... CCTCGGCCCCGGGCCATCGTGTGCGACCACGACGAGGAG 21158 36 100.0 36 .................................... TTCGCCCGCTTCCGCTTGGCCCGCGGGGGTGTCCGC 21230 36 100.0 36 .................................... TCGACGGCGCTGTTCCAGATCACCCTGCTCGGTCTG 21302 36 100.0 37 .................................... CGCCGCCCCAGTTGGTCACGTCGGGGGAGCCGGACTT 21375 36 100.0 35 .................................... GCCGGCAGTCCGTTCGCCTGGGCAAGCCGCCGCAC 21446 36 100.0 36 .................................... CGTCAAGCCGGCGATCAAGCGGGCCGAGGCGATCCA 21518 36 100.0 36 .................................... GGCCGGTCTGTGCGTTGACGAGCAATGCCATGGACG 21590 36 100.0 37 .................................... GGCTCGGTCTTGGGCAGAGGCTAACGGGCACGAATTC 21663 36 100.0 40 .................................... CCCATCCAGTGAGAAGTCGTCCGCATTAAACTCTTCGCTG 21739 36 100.0 38 .................................... TCTGCAAGTCAGCGTCAGGTATGACCAGAACTTCACAC 21813 36 100.0 35 .................................... GCCGTCTCTGAAGTAGGGTGAGATCCACACTTCCC 21884 36 100.0 36 .................................... ACGGGGCCAGGATCTGTGACAGCTCCTCGGCGCTGG 21956 36 100.0 35 .................................... CACATCCCCGCCCGCACGCTGGTGGTGAGCGACCT 22027 36 100.0 36 .................................... GACCAGTGCGGAATACCAGTTCGACCACCGGCAGCG 22099 36 100.0 35 .................................... CCGGGCCGCTGATCCAGGCCGCGGCCGAATTGACC 22170 36 100.0 38 .................................... CCGCGCGTTGGCGTTGGGGCTGGCTGGCGTCAGGGTCA 22244 36 100.0 38 .................................... CATCACTTGCCCTCACGGATGGCCTTGCGGTAAAGCTG 22318 36 100.0 35 .................................... ATCGGCCGCACGTGCCGGCCGCTCGGGGGCAGGCT 22389 36 100.0 52 .................................... TTCTGAGGCGGCGCCGTGTACCGCGGAATACGTGTGCGCAGTTGCGAATTGG 22477 36 100.0 38 .................................... CCGTGCGGTGAAACTCCAAACCTGTCAGACGAGCCGTG 22551 36 100.0 35 .................................... GTGACCGCGACTCAAACCAAAGCGGCCGCATACAG 22622 36 100.0 36 .................................... GAAACGCTATACACAATCGCTCAACGCGAGCAGACG 22694 36 100.0 36 .................................... GCGGTTCCGGGCAAGGGCCAGTTTACGCCGTTCGTG 22766 36 100.0 38 .................................... ATCGCCAGCCGCCACAGGCCCGCTTCGCACGTCAGTGT 22840 36 100.0 39 .................................... CTGGCAGCGGGCCTGCAAGGCGGCCCACCCGGGTGCGAA 22915 36 100.0 37 .................................... CTGTGCCGTCCGGTGTAGTGCCTGCGGTTAAGTCAGA 22988 36 100.0 36 .................................... TAGAGCCGGGTATTAGCATCACCACCAAACCAAGTA 23060 36 100.0 36 .................................... AGCCGAGCTAGCTGCTGGCCGCGCAAGAACCTTTAA 23132 36 100.0 36 .................................... CTGTTCAACGTCTTTAGGGCAGCGAGCTATGGGAGA 23204 36 100.0 36 .................................... GGTTGCACGGCTACCCTGCACACATGGCCAAGTCGA 23276 36 100.0 37 .................................... AAGCCGACTCGTGGCGGACGGACCTGGGGCACAAGCC 23349 36 100.0 36 .................................... GTACTGCCCCCGCGGAAAGCCTTCTAGCTCGGTGAG 23421 36 100.0 39 .................................... CCCTTCTCGGTCACGGCGGCCCGCGCGGCCGTGTTGACC 23496 36 100.0 40 .................................... ACCCGTCCGGGCTCGCCTCGAACGTCACCGCGAGGCTCGT 23572 36 100.0 36 .................................... CCCCGACTACCTCGCGGGCGTGCTGATGGGCAAGCA 23644 36 100.0 41 .................................... CGGCTGCGGGTGGCGGTGGGGGCGTACAACCAGACGCACGC 23721 36 100.0 35 .................................... GCCCGCGAGCTGCTCAGCGGCACGGCCGCCAACGG 23792 36 100.0 36 .................................... CTGTTGGAGAGCTTCCTTTTCCTTGGCCGTGCCTTG 23864 36 100.0 34 .................................... AAGTGCTTCGAGTTATTCGGACGCAGTCTTCGCT 23934 36 100.0 37 .................................... GTAGTGGTCAAGGGCGTCGAGACTGTCGCGGCGGCCA 24007 36 100.0 36 .................................... GAGGAAGAGGACGACGAAGAGGAAGCAACTAAGGTC 24079 36 100.0 37 .................................... CCGAAATATCGAATTTGCGGTTTACACCGCAGAGTGT 24152 36 100.0 36 .................................... CCGATCGACGGTAAGTTTGTCATAATACCAGTTGAC 24224 36 100.0 37 .................................... ACGGCGGTAGTGGAATAAACGTGTGCGATCGCTGGCT 24297 36 100.0 38 .................................... AAGGCCACCGCTGCCGCTTGACCCGTGGCGATTTGATT 24371 36 100.0 37 .................................... GCATCGGTCTTCTGACGAACTTCGACTTGATCCTTCA 24444 36 100.0 38 .................................... TGCATCAGGGCGGTAGTCATTTTGTCGAGACAACGCTG 24518 36 100.0 40 .................................... TCGTGCTGTTCTACGAGAAGTGGCCGATGAATGGTGGCGA 24594 36 100.0 36 .................................... GCTCGTCCCCGGTATTCAGAAGTTGGTGGACGAAGG 24666 36 100.0 38 .................................... GCCGAGGGATTCCAACTCGCGTAGTCAAGGTAGAAGTT 24740 36 100.0 36 .................................... TCATTGTCTTCAACTTGAATGTACGTTGGCACTGCG 24812 36 100.0 34 .................................... TCAGCCGTCGCAGGGCTGACAGTCTCGCCGCCCG 24882 36 100.0 36 .................................... CGGAATCCGCGCGACCGGTGCCGGTATAACCGTCAG 24954 36 100.0 36 .................................... GTTATCGTCAAAGATCGCATAACCAGTGCCCAACTT 25026 36 100.0 36 .................................... GGCAGGAACCGAAGTTCCTGCCTTGCAAATTTCAAT 25098 36 100.0 37 .................................... CCTTCACGAAACGGGTGCTGAATGGGCAGCACCCGCT 25171 36 100.0 38 .................................... CTGCTCGATGCGGATGAGTACACGGTGGAGCCGCTGGA 25245 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================== ================== 188 36 100.0 37 GCTTCAATTCGGCCGCGGCTATGAGCCGCGGAGAAC # Left flank : CAACCTCCAACGCGACGACCTGCTCGGCCAGTAACCGCAGGCTCCAGTTGGCGAAGCCCTTGGGCGGCGGACCCAATCGCATCGCGATGACTTGGGCTTCCTGTTGGCCGTCGAGCAACTTGGCTCGCGGGGGCTCGGCCCGGGGTTGGCCGTGGAGTGCCACCTCGAACCCGCTCGTCACCACGCGCTCCCGGATATTCTCCACGGTCTTGGTGCGACATCCGACGGCCTCGGCAATCTTCGCATCCGTCCAGCCCGGGCCATCGGCATCGGCCTTCAGAAGAATCTGGGCCCGACGAACCTTCTGCGAGGATCCCTTGAGTTTCTTGACCACCTCCGACAACGTGGCCCGTTCCGCATCCGAAAGACGAACGATATACTTCTTCATCACGGCGGCACCTCACGGGGGGGGCTGCCATCATACCAATGGACCCCGTGGCATCCTAATTCGTTAGCCTGACACAGCACTAGGGCGACGGATAGCAAGGCGCGGCCGAGGA # Right flank : CTTCGATTCTCAGAAATTATATCGTCGCAACGGATTATCGCAATCTCCGCGAGCGGTTGAGCGCGAAACGCTGTCATGACGTAAACTCTGGGACACCAGTTGCCACAACCCGCTGACCAAACCGTCGGTTGCGACTTGCGAGCGGTGGCGAACTGGCGCCCGGTGGAAACTCGTTAGTTGTCAAAGACCTTCGGCGCGAAACGCCCGACGACGCGTTTCACCACCGGGCCGCTCGCGTGTCAGATCACCCGGTCAGGCCGGGCAGGTTCGGCGTCTTGCCGACCAGAATGCGCGAGGTCCGGAACACCGAAGTGACCCTGAACCCGCGGAGCAGATCGGCCTCCCAGGATTCGGTCTGGAGGCCCCGCAGGGACAGCATTGAGGCCGCCCCGTCGGCTGTCAAGCACGAATCCCACAGCGGCCACAGCCAGAACGTACTCGCCGCGCGGTTGCCCCGGAACCCGCGGGGTGCGCACGCGGTCCCCGTCCGGGAACGACGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATTCGGCCGCGGCTATGAGCCGCGGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.50,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA //