Array 1 10057-9295 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMJZ01000043.1 Intestinirhabdus alba strain BIT-B35 Scaffold43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10056 29 100.0 32 ............................. TTGAGCAGCGGCGGTGAGCCGCACATGAACCC 9995 29 100.0 32 ............................. CCTGTCAGGATAAATTCAATAACCTGAAACAC 9934 29 100.0 32 ............................. AAAAGCAGCATCCTCTTCACTCAAACCCATAG 9873 29 100.0 32 ............................. GTTATCTCGAACTTCGTTTTACGAGGGCGATA 9812 29 100.0 32 ............................. ACGAGCACCCGGACTACCCGGAGTTCATCGCC 9751 29 100.0 32 ............................. GCTACGTTACAGTCACCACACATCACATTCAG 9690 29 100.0 32 ............................. TCAGGCAGTGCGAGCTGTTTCTGATAGTGCGG 9629 29 100.0 32 ............................. CGGATTAACAGAATGAAGAAAGGCGACTATTA 9568 29 100.0 33 ............................. TCGGCCGCTTTGCGGGCGGTTGGCGAGGCGTCC 9506 29 100.0 32 ............................. TTTACCAGACCGAGAACGGCACTTTGTACCCG 9445 29 96.6 32 ..C.......................... ATGGTCTCCTCATCGCGGCGGATATACTGAGT 9384 29 93.1 32 ............T....A........... TGCTTTCCCGTATTGCCGGCACGGCAGGCGCT 9323 29 96.6 0 .............A............... | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.9 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATCATCTGACTCTAAGCGCGCGTTATCAGGTTGATTATATTGAAACTTTGTACGGCCTGGTGCGCTCCCGGTTAGCGGTGGCGATTCTGCCCGAGCTGTATACCACTCATCTGCAGGATCCCTGCCTGAAGGTGGCCCAGCTCCAGCAGCCTGCGCTGACGCGCACCGTGGCTCTGATGCGCGGCCCGCAGCCCCTGCCGCCGCTGATTGAGGCGTGCTTTTCGTTGCTGCTTAATTCACTGCGGCAAGCCAGGCGTTAGGGATGCTTTCTGAGGCATTGGAGATTTTCGTAGCGGTGAAATGATGGCGTAAACAGCGTCGGAGCCAGGGACCGGGAGCGGATCGGCGTTGGTAGAATGCGAGAGGGATAACGGAAAATTTCTTTCTGCCATTTAAAATCAAAGCGTTACCGCTCTTTAATAAAATGAATAAGTTATAAAAAAGTTGGTAGAATGTTTTGCCCTGAAAAACCGTTTTAGAAACAAGAAGATATTTTTAGT # Right flank : TTCCGCACCGGTGCAATTTAGTTCGTGAGTCACCTACAGAACCGAACGAAATAATGGAATGTTCGTGCGGTTCCTGACTGATAAAATTTTCAAAAGATGATGATTAAGCACAGCTTCCTGAAGGACTTTTCAGATCATAGCGGTAAAGTGTTAATTCCTTAAAAATTATGAGTTAACTATAGCTATATTCATGTAAAATGACGTCTTAATTGTCTGTCTATTTTATTTGGGTCTATGGGATTAGGGATGAAGTATCGGAATGATATTGACGGCCTCAGGGCTATAGCAGTAATGTTAGTGATTGTTTTTCATGCGGGGTTATCTGTTTTTCCCGCAGGCTTTATTGGGGTTGATGTCTTCTTTGTCATATCCGGTTTTCTTATAGCGAATATCATAAAAAACGGTATTGAACAGAAAGCATTCAGTTTTACACAATTCTATCTTCGCCGGGTATGGAGATTATTACCAGCAATGGTAACGATGATTCTCTTTGCCTTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 497-946 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMJZ01000013.1 Intestinirhabdus alba strain BIT-B35 Scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 497 28 100.0 32 ............................ TTGGGCTGGTGGCTGGTGCGGTTACCGTCACC 557 28 100.0 32 ............................ ACTGACAAAATTCAGGGATGGAACAGAGCAAA 617 28 100.0 32 ............................ GGAAAGAAAATATTTATCGTGAACATTATTAT 677 28 100.0 33 ............................ TGGTATACGCTCCCAGCGTGTGCCGTTTAGCAC 738 28 100.0 33 ............................ CTTAGTCGATTACGGATAGGTGAAACAATTACC 799 28 100.0 32 ............................ CTCAACGGCCAACAGGCAAGCTGTTAACCGTT 859 28 100.0 32 ............................ ATGCCCGGCCGCGCTCCGCGGAAAATCAGTGA 919 28 89.3 0 ......................C..TG. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTACAGGCTCTCAACTCAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCATATTGTATTGTTGCCCAACTACCCGGGGGCAACGGGGCGGTACTATAGGGAGTTGCGGGGAGACGGTCAAGCAGTATTTAAGCTTTCATTATCGTTTGGTTACGCAATGTACATCATCCTTTGGTAGGAAAGGAACGAAATCAGATTTTGGGTATAGTTATGACGGGTGCTGTACTTCCTGCGAGGCAGGGAAAGGGGATTAACCTAAAGCCCGGTGGGAAATTAATGATGTCTGTAATCCGGCTTTCTCACTAACCCTTTTTCTTGACAATATTATAACTATTTGTTTTTAAATGTTTATTTATAGTAAGTAAAAAATAGGGTATATCCGGTTGAGCATGAGTTTTTCTACATGTAATCAATGTAATAGCCTGATATGATTCCAG # Right flank : ATAGAAAGAATAACGATGGGTATCCTGGCTGGTGTTCGCCGCATCGGGCGGGGCGATACGGAGCTAAAGCACGCTATGCGCGCAGGCGGACGGCGTACGGGCGAATAGCCCTGGAGGCCATCAATACAAAAAAGGCCGGATAAACCGACCTTTTTATCTTCTGTACGCCGCGCGGGCGTCAAAAATAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACGGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGGGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAGCGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCATAACTTGAACCGGCAAGATAATGCCGAAGTTCTTTAAATAAGTAAAGATTTGTGCGCTAAAACGCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10366-9677 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMJZ01000031.1 Intestinirhabdus alba strain BIT-B35 Scaffold31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10365 28 100.0 32 ............................ GGAACGAGCATGCCGGAGAGCAGCTTTATTTC 10305 28 100.0 32 ............................ AGATTTCACGCTCTGCTGCACGTCGTGATTGG 10245 28 100.0 32 ............................ GCAACAGCATTTTGTATATCGCGCGCGGCTCT 10185 28 100.0 32 ............................ TGTTAGCCGTTGAGGGATTGGACAAATCCGGC 10125 28 100.0 32 ............................ GTGCGTAAAGTCAGCGTTCTGCCAGAGTCAGT 10065 28 100.0 32 ............................ TACGCCTGGGACGAGGGCATTGCACCATGAAC 10005 28 100.0 32 ............................ TTAATCGGGCAGCCTGTGGTGGCGCAGTGTTT 9945 28 100.0 32 ............................ TTACTCCGAACCTGAAGGAGCTGGGTATATCC 9885 28 100.0 32 ............................ TTACGGGCGTCTGTTTGTCAGGACTGTTTTTT 9825 28 100.0 33 ............................ ACACATAACCAGCCCGCCGCCTTTCTGTAATCG 9764 28 100.0 32 ............................ GCCCAGACCAGCGCACCGGGCGCACATGGCGC 9704 28 85.7 0 ...............AT....G..T... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGGATCAGAAAGGCGTTTCCCTGGAAGTCAGCCAGGAAGCGCGCAACTGGCTGGCGGAGAAGGGCTACGATCGGGCGATGGGCGCGCGGCCTATGGCGCGGGTGATTCAGGATAATCTGAAGAAGCCGCTGGCGAACGAGCTGCTGTTTGGAACGCTGGTGGACGGCGGGCAGGTCACCGTTGCGCTGGATAAAGAGAAAAACGCTCTGACCTACGGTTTCCAGAGCGCACAGAAGCACAAGCCAGAAACAGCGCATTAATGCTGTTTTAAACGATAAACCGGGTTCCGTTCACGTACCCGGTTTTTTATATCCGCCAACGACGGGTTTCATTGCTTAAGCTGCAGCCGCAATGGAGCGTCTTTCTTCTGACCCTTTTTTCAATATAAATTATAAGTTATTGATTTTAAGATTTATTATTTATGCAGCAAAGAATAGGGTTAAAATCATTTAATTTTATTTATATGTTATATAACAATATGATAGCGTTTGTTGCTATCA # Right flank : AAAGCTCCTGTTATACAGTTAATAAAGCAATAACGAATAGATTGATTCTAATCAATTCTGTTTACTTCTACCTGACGGTAGCATAGTTCATTATGTTAAGCCTCTTTTATGGGGAAATGCGCGTCTATGCCCGAAAAATTTATCTCGCCAACCGATCTGAAAACGATATTGCATTCTAAACGTGCCAATATTTATTATCTTGAGAAATGTCGTGTGCAGGTAAACGGCGGGCGGGTGGAATATATTACCCAGGCGGGTAATGAATCGTATTACTGGAATATTCCTGTCGCTAATACTACGGCAGTGATGTTGGGAATGGGTACTTCGGTATCGCAGGCAGCCATGCGTGAATTTGCCAGAGCGGGCGTAATGGTTGGTTTTTGCGGCACGGACGGTACTCCGCTTTACTCTGCCAATGAAGTGGATATTGAAGTTTCATGGCTATCGCCGCAAAGCGAATATCGCCCGACAGAATATTTACAGTGCTGGGTTTCTTTCTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 179829-180162 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMJZ01000003.1 Intestinirhabdus alba strain BIT-B35 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179829 29 100.0 32 ............................. CACTGACCCCGAAAAACGATACAGAGGAGCAA 179890 29 100.0 32 ............................. CCCCCTGTGATCAGGCGCGGTGCAATTCTACT 179951 29 100.0 32 ............................. TCGTCGATGTCGATGGTACCCGTGACAGTCGC 180012 29 100.0 32 ............................. GGCCAGGTGCTGGTCAGAACGGCGCGCAGCTT 180073 29 100.0 32 ............................. CCCCAGTCAATCAACCCGCGTGACGATTCTTG 180134 29 93.1 0 .......................A....A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GTATTGGCGGCTGGTGAAATAGAACCTCCGCAGGCTGCTCCGGACATGCTGCCGCCAGCAATTCCGGAAGCGAAAGCCATAGGAGATTGCGGGCATCGGGGACGTGGTGGATGAGCCTGGTTGTTGTCGTTACGGAAAATGTTCCACCGCGCTTACGTGGACGCCTTGCGATCTGGCTTCTGGAAATACGGGCCGGTGTCTATGTCGGCGACGTTTCAAAACGTATTCGTGAAATGATCTGGCAACAGGTTACGCAGCTTGGCGGGTGTGGAAACGTTGTAATGGCCTGGGCGACGAATACTGAATCAGGTTTTGACTTTCAAACGTGGGGAGAAAATCGGCGAATGCCGGTGGATCTTGACGGTCTTCGCCTGGTTTCTTTTTTTCCTGTTCAGAATCAATAGATTAATCGCTCTTTAACAATGCGTAATTGTTGTATTAAAGTTGGTAGATTGTTTAATGAATAAAAAAGTAAGAAGAAACAAAGATGTACGCTTAGT # Right flank : AAATTAAAACAGGAACATATTTTTTGGGGAACCGTGACGCAATAGCTTTGTAAATTTTGCTCAGTAAACCGGTCGCTTTTTCGGTGGCTAAAATAAATTTGCGAGTGAGGTCCGGATTCGGACTTTTATTGCTCGCCTGGCTTAGGGAATTATCCTGGATAATCAGGCGGAATGGAGAAAAGTTGCCAATAATGCTGCCAGTGAACTATCCGAAAACAGACCTTTGTGCTGTTTTATTTATCTCTATGTTTTACCCTTAGCGAACTATTGCCGGAGGCAGTAGCGTAAATAAATAACTGAGGGAATAACTTGATGAAAAAAATCGTATTGTTTGCTGCGTTGACAATGATGTCCGGATCTTCTTTTGCAGCAATTACCGAAACCTGTCAGCAGTATTTCAATGATGTCGATGCCCTGATCGAGCAGGCTTCAAAAACCAGCGATCAGGCTAAACAACAGATGGATGCGATGAAGCCGCAGCTCGAACAGTCAAAAAAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //