Array 1 2610-2882 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAGP01000026.1 Escherichia coli strain TZ26_S scaffold_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2610 29 100.0 32 ............................. CCGATCACACGCTCCCACGGGCCGTACCAGTC 2671 29 100.0 32 ............................. ATGATTTTTGCACGACGTTCAACCGGCGTTTC 2732 29 100.0 32 ............................. ATCTAACGGAGTTAATCTTATCCGACTTTTTG 2793 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 2854 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTATTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23933-24816 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAGP01000026.1 Escherichia coli strain TZ26_S scaffold_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23933 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 23994 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 24055 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 24116 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 24177 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 24238 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 24299 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 24361 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 24422 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 24483 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 24544 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 24605 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 24666 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 24727 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 24788 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AACGGATGAACAAGTCAATAAACTTCAGGCCTACTGGGGAATGCCACGACGTATACGTATTGATTTTAAGACAACCTCAATAGGTAACTGCGACATTTGCGGTAGGCAGAGCGATGCTCTTTTGGGCTTGATGTCACTCAAAAACTATGGTGTTCAATACGTCATGTGGCGCCATCCTCTAACACCTTACCGTCTGCCGCTTAAAGAGGGTGGAGATTTTTACTCAGTTAAACCACAACCTGGTGGTTTAATCTGGCGCGACTGGTTAGGCCTCATAGAGGTAGGTAACTCAAAAAACAATACTGAACTCCCCGCACAGGTCGTGAAACTTTTGAATGCCAGCAATCTAAAGCAGACAAGGGTGGGCTTATGGGGATTTGGTTTTGATTTTGAAGATATGAAGGTTCGTTGTTGGTATGAACACCATTTCCCGCTGTTGTTAAACAAAAAAGAAGACCTAATAAACCGCGCGTTTCTGGAACCGTAATTTGCTGCGGTAT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //