Array 1 636313-635657 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJDF01000002.1 Pseudoalteromonas sp. R3 R3_scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================== ================== 636312 35 100.0 35 ................................... AATGTTCTACTCCACCGAACCAAGCAATAATTATT 636242 35 100.0 33 ................................... ACGGTACCACGCTTCAAGTCCACATCGAGTCCC 636174 35 100.0 34 ................................... CTTCAGCGGCTCGCCGCATGAATTCCAGTAAGCC 636105 35 100.0 35 ................................... AGATGCTATTTGTTTTTGAGGCATTTCGTGCACTT 636035 35 100.0 34 ................................... TAAGCTTTGTTTAAATGCTTACCAACTGCTCTCT 635966 35 100.0 34 ................................... ATTTCCACTAGTGTCTACCCCAAAGCCATCCTCT 635897 35 97.1 35 ......G............................ AAAAAAGGTTAGAGCTATGGTGCTTGAACTTTTCA 635827 35 100.0 32 ................................... TTCATTATCAGGCTCCCAACACGATAATAACC 635760 35 97.1 34 ...........................G....... CGATGAATGCACTCCAGGTCATACCAAATGCAGT 635691 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =================================== ================== 10 35 99.4 34 GGTTGGATGCTCCCCGTTTGATAGGGGATTAAGAC # Left flank : TAGCGCTTCATGGGCGAATCAAAGTGCACATCGCTGACCTATCGGATATTTGCTACCACCGTTAAGCCATTAACTGAATAACTCAAGCAGGGTAAAAAGTTATCTACAGAATTAATAATCAAATCTGATTACTCGGCATCAGCTCATAAACCTGACAAATGTTTATGTATCTGAAGTGGGTAAGTCATTACGGATATCCACAAATCAATCGTTCCAAAGGATAGTGGAAAGAATAAGCTGTAGATTGTCATCATTATTTTTTATCAATTTCAATTGGATAGTTAGAAAAGTGGATAAGAATATGACAAACTCATCGGTACTGACAGGGTTGGCTTTTTGGGCAATAATACAACTTATTGAAAGTTAATTATAAATATATTATTGATGTAAGTAATCTCGCAATTTTTTTGTAAGATATTGACACTTACTGACAAACTGAACAATACTAGTGACTTATCCACCGCCCGAGCCCACGGCTGGCAAGGCCTCTGGAAGTAAGG # Right flank : CGAATGTTTTTACTGTATACAGCAAAAGCTTTATTGTTTGGATACTCCCTGCTTGTGGATCGTGATTACCAACCATTCACAGTCATTCCGCACTCGCTGCGGAGTCTACAAGCAAGCAACTCGGAAATAGTTTTGTGATTAGACTGGCAGTCTCAACCGAACATCTCTTTGCCTGTAAGCAGATACCGGATCAAGTCCGGCATGACAGAGGAGGGGTATTTGGTTCAGTGCGAAGGTTTGGCAATTGGTACTAACTGACAAACTGAACAATACTAGTGACTTACCCACCGCCCGAGCCCACGGCTGGCAAGGCCTCTGAAAGTAAGGGTTTGGATACTCCCCGTTTGATGGGGGATTAAGACTTATCGGTAGGTTTCTCCGGGGCGGGACTTCTTTGTTTGGATACTCCCCGTTTAATGGGGATTAAGACAATTGGTTTAGCTGCTGAAACTTCTGGCTCTGTGTGTGGACGCTCCCCGATAGGCTGAGAGCCGCCCGGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGGATGCTCCCCGTTTGATAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 637700-637467 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJDF01000002.1 Pseudoalteromonas sp. R3 R3_scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 637699 31 100.0 35 ............................... CCACAATATAATCGCCAATATATAACCGATAGTGG 637633 31 100.0 34 ............................... ATGACGTCATCGTTTTTTGTGATAGGTATGCCGG 637568 31 100.0 40 ............................... CCCACTCTTCTGCAGTTAAACTATGCCACTACATTGACCA 637497 31 74.2 0 ..A.AC......TTT..T........A.... | ========== ====== ====== ====== =============================== ======================================== ================== 4 31 93.5 37 CTGCGTTCCCCGCACGAGAGGGGATTGAGAC # Left flank : CTGGCTTTTCCGTGCCGCTGGCATTTGCTTCGTCCTTATCCTTGGATCAGATGAAAAGCATAGGCGAGGGGAGTATGACAGACAAGTTTTTGGTTGGGTGTCTGTCATTTCGCTTTTGATTGAAACCATTCTTGTTAGCCATGTATGGTTTGGATACTCCCCGTTTGATAGGGGATTAAGACGATAAGGCAATAAGCGTATCATGTGTTTGGCGAAGGTTTAGATACACCCCGTTTGACTATCCAGCTTTTTACACAGTGCTTGCTAACCACTCACCGTCATTCCGCACTTGATGCGGAATCTACCTTCAGACAACTCCATTTGCGCTAACCTGTGGTTCTCACTAAAACCCCGGGAGGTTAGCGCTCATGTAAGCTCATGGTTATTATCATATTGTGTAATTTTGATATGCAGAATGCGTCTGCTTTGGTCAAAATTGACCGAGGTTAGCGCAAAAGCAGGTTTCTGGCCTTGTGACATGTTGGCTGAGGAGCAGACCG # Right flank : TTATTAGGTAGCTTGGTGTTGAAGCCTTTTTCGAAGTTTGGATACTCCCCGGTTGATAGGGGATTAAGACTGATCTTATCCAGCTCTTCTATGTAAGCTATTAATGTTTGGATGCTCCCCGTTTGATAGGGTGAACGCCGCTCGGAAAAAGCACCGCTTTTTCAGGCTCGAAGGTGAAGCACTGGATGGGCGAACTGGTTATAGCTTCATGGATGAATTACCTGCACACTATCAAACTGTTTAACTGCATTCCCCGCCCGAGAGGGGATTAAGACCTCTTTTCTTGGTTTTACCAATTGACTTTCTTTCGTTTGGACGCTCCCCGGTTGATAGGGGATTAAGACAAGAAGCCAAAGAGACTGCGGTTGTTACCTACAGTTTGATATTCCCGGGTGTAAGCGCGAGGCAATGGACGCCGATTCTGGCGAACGAGCCACTTGGCGCTTCATGGACGAATCAATGTGCACATTGTTGAACTATTGGACATTCCCCGTTTGATA # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCGTTCCCCGCACGAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 237222-237461 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJDF01000011.1 Pseudoalteromonas sp. R3 R3_scaffold11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 237222 35 100.0 34 ................................... TGTCTTAAGAACTGCTTATCCTCTTCAGGTGTAT 237291 35 100.0 32 ................................... CTCTTTTTGGCTTAGAGAGTATCGGCGTTTAA 237358 35 97.1 34 ...................A............... GCTACCAGCCAGTCGAATTGCGTTATGTCTGTTA 237427 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================== ================== 4 35 99.3 34 GTTTGGATACTCCCCGTTTGATAGGGGATTAAGAC # Left flank : ATAAACCTGAATTAAAAAGTACGGAGACATGCTTGGATACTCCCCGTTTGATAGGGGGTTAAGACACTCCGCTATTTAGAACATTACGAAAGACATCGTCTGGTTGGATACTCCCCGTTTGACTATCCAGCTTTTTACACAGTGCTTGCCAACCACTCACCGTCATTCCGCACTTGATGCGAAATCTACCTTCAGACAACGCCGTTTGCGCTAACCTGTGGTTCTCACGAAAACCCCGGGAGGTTAGCGCAAAAGCAGGTTTCTGGCCTTGTGATATATAGGTTGTGGAGCAGACCGCTGCGTTCCCCGCACGAGAGGGGATTGAGACGTTTTTTCGTACAACCAGCTTTCAACGGTCTTCGCTGTGTAGTGGTCAACTAATCCCGGACAGTAAATAAAGTTTTTCTTCCGCAGCAGCTGGCGCGATCATTTCATTGTTGCTGTGTGGCCTTTGCCAGTTGTAGTAGTCCGTTTAATTGATGTTTATCTTACCAATACCA # Right flank : CCGAATGTTTTTACTGTATACCGCAAAAGCTTTATTGTTTGGATACTCCCTTGCTTTTGTGCAACGTGATTACCAACCATTCACAGTCATTCCGCACTCGCTGCGGAATCTACCAACAAGCAACTCGGAAATAGCGTTGTGATTAGACTAGCAGTCGCAACCGAACATCTATTTGCCCGTAAACAGATACCGGATCAAGTCCGGTATGACGGCGGTGTGGGAGTTTGATTCGATGCAGAGGCTTGGCAATTGGTAAGGACTGACAAACTGAATAATACTAGCGACTTATCCACTGTCCGAGTCCACGGCTGGCAAGGCCTCAGAAAGTAAGGGTTTGGATACTCCCCGTTTGATAGGCTGAGAGCCGCCCGGGAAAAGCACCGCTTTTTCAGGCTCGAAGGTGAGGCCTTGGATGGCCGATTCTGGCGAATGCACCACTTACTGCTTCATGGATGAATCAATGTGCACATTATTGACCTACTGGATACTCCCCGTTTGAT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGATACTCCCCGTTTGATAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 238425-238783 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJDF01000011.1 Pseudoalteromonas sp. R3 R3_scaffold11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 238425 32 100.0 34 ................................ ATTTTCCAGGTGATTGGTATAGGCCTGCTCCAGC 238491 32 100.0 34 ................................ ATTATCATGTATTGAGAGTAGGAAAGCGTTGGGT 238557 32 100.0 33 ................................ CATGAGTGGGCGGCGATTATCGAAAAAAAATGG 238622 32 100.0 33 ................................ CAGGTGCCAGCGCTGGGTAGCCGAATCTCGCAC 238687 32 96.9 33 .............T.................. GCCTGACGATGTAGTCACCGACAACCGGCGCTT 238752 32 87.5 0 ..............TT..T........A.... | ========== ====== ====== ====== ================================ ================================== ================== 6 32 97.4 34 GCTGCATTCCCCGCGCGAGAGGGGATTGAGAC # Left flank : GCACATTATTGACCTACTGGATACTCCCCGTTTGATAGGGGATTAAGACTTACTAAACTCAGTATTGAAAGTCCCTGAGACAGGTGGTTTGGATGCTCCCCGTTTGATAGGCTGAGAGCCGCCCGGAAAAAGCACCGCTTTTTCAGGCTCGAAGGTGAGGCCTTGGATGGCCGAACAGGTTAGCGCTTCATGGACGAATTACCTGCACATTACAGACCTATTGGATACTTCCCTCGTGACTATCCAGTTTTGTGCACAGTGATGATCAACCACTCACCGTCATTCCGCACTTGATGCGGAATCTACCTTCAGACAACGCCGTTTGCGCTAACCTGTGGTTCTCACGAAAACCCCGGGAGGTTAGCGCTCGTGTAAGCTTATGTTTATTATGATATTGTGTAACTTTGATATGCAGATTGCGTCTGCTTTGGTCAAATTTGACCGAGGTTAGCGCAAAAGCAGGTTTCTGGCCTTGTGATATATGGGCTGAGGAGCAGGCC # Right flank : CCGAATGTTTTTACTGTATACAGCAAAAGCTTTATTGTTTGGATACTCCATGCTTTTGGATCGTGATTACCAACCATTCACAGTCATTCCGCACTCGCTGCGGAATTTACCAGCAAGCAACTCGGAAATAGCGTTGTGATTGGACTGGCTGTCTCAACCGAACATTCTATTTGCCTGTAAGTAGATACCGGATCAGGTCTGGTATGACAGAGGCGGAGTATTTGGTTTTGTGCTGAGGTTTGGCAATTGATAATGATTGACAAACTGAATAATACTTACTACTTATCCACCGTCCGAGCCCACGGCTGGCAAGAACTCTGAAAGCAAGGGTTTGGATGCTCCCCGTTTGATAGGGGATTAAGACTTTAAACAACAGAACTAAAAGAAAAACAAATTCTGGTTGGATGCTCCCTGTTTGATAGGGGATTAAGACACTGAATTTTATCACCGCTATCACAAGTTTTTTTGTTGGATGCTCCTCGTTTGATAGGCTGAGAGCC # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCATTCCCCGCGCGAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //