Array 1 1899172-1896587 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064788.1 Halapricum desulfuricans strain HSR12-2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1899171 37 100.0 35 ..................................... CACACACAAGTAGAGAGCCTGAAACGGCCGAGATC C [1899150] 1899099 37 100.0 36 ..................................... GCTCCCGCTCGCGCCGTACGTCAAACTGATTCTCCC C [1899078] 1899026 37 100.0 37 ..................................... ATCGCGACGCCGCCGAGCGATCCCGCGAGGACGTCCG C [1899005] 1898952 37 100.0 36 ..................................... CGATCTGTCGCGAGCACGTCGCCCAGGACCAGCGTC C [1898931] 1898879 37 100.0 37 ..................................... ATCAGTCCCGGACATGGCGATCAGTCCCTGCCGTCGT C [1898858] 1898805 37 100.0 35 ..................................... ATCGCCGCCTGCCGACACTGCCGCGAGGTAATGGA C [1898784] 1898733 37 100.0 37 ..................................... CTTATCTACGTGGCCGTCGTCGCCGCTGTAATGCGGC C [1898712] 1898659 37 100.0 36 ..................................... ACGGCGGGCTACGCTCGGCGAGTCGTGCAGAGCGTC C [1898638] 1898586 37 100.0 35 ..................................... ATGTGATCGAAGAGTTCCTCCGAGAGCTGAATGAC C [1898565] 1898514 37 100.0 33 ..................................... TAAACCGGTCGATCACACCACCGAAGGCGTCGG C [1898493] 1898444 37 100.0 37 ..................................... ATCAACTCGCGGACGACGCGATCGCGACTGTCTGCGT C [1898423] 1898370 37 100.0 36 ..................................... GAGGCTGGCAGGAGGTGCAGGAGTTCCTGTTGGCGC C [1898349] 1898297 37 100.0 39 ..................................... ATTGACTACGGCCAGTACGATATCCAGGTCCGCGAGACT C [1898276] 1898221 37 100.0 34 ..................................... GCTGGTGCTCGGGCGCCTTGATGTGGAGCGTCGC C [1898200] 1898150 37 100.0 35 ..................................... CTGGCGGTCACGGGAACGCTGACGCTAGCTGTCAG C [1898129] 1898078 37 100.0 36 ..................................... TCGCGGAGGAACTCCTTGCCAGTAGCCGTCACCCAG C [1898057] 1898005 37 100.0 36 ..................................... TCGCGGAGGAACTCCTTGCCAGTAGCCGTCACCCAG C [1897984] 1897932 37 100.0 35 ..................................... ATCAAGAACAGGGACGCCGTCCGCGCCGGAGACGA C [1897911] 1897860 37 100.0 37 ..................................... ACCGGGTTCTCGACGTAGTGGCGATCGCCGTCGCCGT C [1897839] 1897786 37 100.0 36 ..................................... TTGATAGTCATTGAGATCACCTTAGGAAAGTTTCTG C [1897765] 1897713 37 100.0 34 ..................................... AGGGCGAGCGCGACGCCCATCGCGAGGGTCGTCG C [1897692] 1897642 37 100.0 36 ..................................... TCTTGCACCTCTGGCTCATCCTGGCCATCATCAACA C [1897621] 1897569 37 100.0 35 ..................................... ACCATCTCAAGGCCGCGCTGGAACAGCACGATATG C [1897548] 1897497 37 100.0 36 ..................................... TAGCATGCACTACGACCACGGGAGCGTCGATGTACC C [1897476] 1897424 37 100.0 35 ..................................... TTGACGTCGCCGACGAGTTGGAGGTAGCGCTTGTT C [1897403] 1897352 37 100.0 35 ..................................... GCACTGGATAGAACAGTGTAAAACTCAATGCTGTC C [1897331] 1897280 37 100.0 35 ..................................... GCATAAAGCCGTCACGCACCGCGTTGAAGTCTATA C [1897259] 1897208 37 100.0 37 ..................................... GATCTGGAAGATTCATCGCTTACAGAACGACCATAGC C [1897187] 1897134 37 100.0 38 ..................................... GGGGAGATCGTCCCAAACCACCCCGAGGACAAAGAGGG C [1897113] 1897059 37 100.0 34 ..................................... GCCGAGAACGTTCAACTCGTCTTTCAGTGCACTC C [1897038] 1896988 37 100.0 35 ..................................... GGCAAGCATACAACGCTATTGAAGGCCGCCCGGTT 1896916 37 100.0 35 ..................................... CACTCCGGCACGCTCTCGGTAGCGGAATCCGCCGG 1896844 37 100.0 36 ..................................... GATGTTTTCGATCCGCGCCCGAGCGCCGTAGATCCG 1896771 37 100.0 36 ..................................... CGCCCTGCTCCTCGAAGTACCCGATGTCACCGTCCT 1896698 37 100.0 38 ..................................... GTCTGATGACGCGGATGCCTGCAATATCCAGACCGGAT 1896623 37 89.2 0 .................................TCCG | ========== ====== ====== ====== ===================================== ======================================= ================== 36 37 99.7 36 GTCGCAGCAGGGAGAAAACCCAGACCGGGATTGAAAC # Left flank : CGATCGTTTCCCTTGGCGGTGGTGCGCGGGATATCTTGCTTCCGTTGACGATCGCGTCGCTCGTTTTTTCACACCGTGTCGATCAGGCGCTGTTTTTCAGTGATATCGACCAGGATGTCCGTCCACTGTCGTTACCGGAGCTGACCGCGCGAGTGCCCGAGCGCACGCAGAAAACATTTGAATCGATCGTCATCGGCGACGGGTGGCAGACGCTCACGGGGATTGCCGACGGGACCGGCCAATCAAAAAGCACCGTCATTCGACACGTCAATGCTCTCGAAGAGGCCGAAGTCGTCGAGGCGGACACGAGTGAAAAAGCCAAACAAGTCAGGGTTTCGTTCTCGGGTGAGCTACTATCGAAGGCCTGGTCATTGCAGACCTGAGTCGATATCTTCGTGGACCTTTTTGAAGTCTCTGTACGGCCCCGGTCGACGAACAGGGGCGCGAAATTCACGAGCGGAGCAAGATTTATACTCGCTCTGGACGGATTTCGACCCCCT # Right flank : ATATTCCGTCCCGATTGGATCCGAGCCGAAGGCAATGCCTGCAGTGGGGCCGATCGTGACAGCGACGAATAACAGGAGTGCAGTCGGACTTCCTGCAAGCGCGACCAGCGGGAACCCGAACACGCCCATGAACAGCAGGGCATACCCCGAAGACAGCAACCCACGTGGAACACGCCGTTCGATGAGCCATCGCTCTCGGGCGACGGTGTACACTGCACGGGGGAGTCGGTCGCCAGTGAACCGCTCTAGAACGCCTTCATCAAGCAACGAATGTGAGCCGCGTGTTCCTATCGCACTCGTGGGTTCGCTTTCCCACACGCGACGGGCGAAGACGGTCGTCAGGAGTGCGAGAACCGGAACGGTGACGGCGACGACAGCAATTGCACCCAGCGCACGGACTGGCGATCCGAGTTCAGCATCTATACTGCCGAGGAGTGCTAGATCGACGAACCAAGCGAGTGGTATCGCGTCGAAAACCGCGATGAGCGGGACCAGCGATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCAGGGAGAAAACCCAGACCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : NA // Array 2 1908890-1912418 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064788.1 Halapricum desulfuricans strain HSR12-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1908890 37 100.0 35 ..................................... CTGGGGTTCGCAGAGGCGACCTGGCTGAATCTCGG 1908962 37 100.0 36 ..................................... CAAATGTCTGAGCTAGTCATGTACGCCGAGGAAAAC 1909035 37 100.0 36 ..................................... CCGGATGCTCGTCGAGCCACATCGTCACCTCCGGTC 1909108 37 100.0 36 ..................................... TCGAGACGACCAGCACGAGTGCGAGTGCGAGTGCTT 1909181 37 100.0 35 ..................................... ACGCCATCCCAGCAGACCCGGCCAATAACGTCCGG 1909253 37 100.0 35 ..................................... AGCTTGGCCCGGGGTACGCGCCGGTCGTGGCGTAC 1909325 37 100.0 35 ..................................... ACTCTCTCGCGCTCTCGGCGGCTCGCAGGGCTCGG 1909397 37 100.0 36 ..................................... GTCGGACATGGTCTGTCTCACATATACAACTATATG 1909470 37 100.0 36 ..................................... TACTCCTTGAACTTCTGAACCTCACTCAGCCCGCTG 1909543 37 100.0 36 ..................................... ATCGTCCACCCGTCGGTGGTAAGATGAACCTTACAC 1909616 37 100.0 37 ..................................... CGGGAGGGGGACGGGCCGCCCGACGCTCCGCTCAATG 1909690 37 100.0 34 ..................................... ATGATCGGTCTGTTACTGTTCGTCGTGCTCGCCC 1909761 37 100.0 38 ..................................... AGAGACGCGCTCGATGACGTCCGCGACGAACTCAAACG 1909836 37 100.0 35 ..................................... GCTGGGATCGCGACGACCTCATCTACGACGCGATG 1909908 37 100.0 38 ..................................... CAGCCCTCGCAGCGGAGCTCGGCGATGACGACCCGGCG 1909983 37 100.0 35 ..................................... TTCTTCGGCGTCGCTGATTCGTTAGCGCTACTGCG 1910055 37 100.0 36 ..................................... CTGCATCGGCCGCGTCGTCGACGATGTCTGACAGCG 1910128 37 100.0 35 ..................................... ACGGCGACGGCGGCGATCGTCGGCGGCGTGCTCGC 1910200 37 100.0 35 ..................................... GGGTCTACCATGGAACCACCGAAGTATCAGGGTCG 1910272 37 100.0 37 ..................................... TCATGAGAGAACCACCCCGGATGCGGGGGTGTGTCCG 1910346 37 100.0 37 ..................................... ATTCGTGAGCTGCTCGACGATGTCGACGACCTCTCCG 1910420 37 100.0 36 ..................................... AGCTCCCGCTCATCAGCCGCAAAAACAGCAGCAGTC 1910493 37 100.0 36 ..................................... TCCGGGCCGTTCTCTCCCTCGACAATGTCGGCGCGG 1910566 37 100.0 35 ..................................... TAGTAATCAGTCCTGCGCGTACTTGAGAACGGCCT 1910638 37 100.0 37 ..................................... ACGGGCAAACCAGGGACGGGCAAGTCAACCCTCGCAA 1910712 37 100.0 35 ..................................... TCGCCGGTCATACACGTAAAAGTCCGAGAACGATT 1910784 37 100.0 35 ..................................... CGTCTCGCGTTGTAGGGTCATGCACACAGTCTGAG 1910856 37 100.0 36 ..................................... CCGCTGGCCGTTAGCGGCCGAGTGGACCGCCCGGGA 1910929 37 100.0 36 ..................................... GTATCGGCCTACAAGCTGGCCCGCATGATCGCTAGC 1911002 37 100.0 36 ..................................... GCTTTGCGTGCTTGTGTGAGTGAAACTGACAGCAAG 1911075 37 100.0 36 ..................................... AGGATGGCGTCGACGCTGACGATGTCGAGACGCCCG 1911148 37 100.0 35 ..................................... GTTTCGGGGATCGTCTCGGTACTGCCGTCCGGGTG 1911220 37 100.0 35 ..................................... GATTTCCCCAGTCCGCCAAGTGACAACTGGCCGCG 1911292 37 100.0 37 ..................................... TACGGACAATCCGCCGGAGGTAATCGAGTATGTAAAC 1911366 37 100.0 36 ..................................... GCAGCGGCAAGAGCGGGCTCGCCGGCCGAATCTGGA 1911439 37 100.0 35 ..................................... TCTTCCAGTCGGTCGGCGGTGTCCTGGAAGGTCTC 1911511 37 100.0 35 ..................................... GCCGAGGGGGGACAGAACTCGCTCGACTCGTTCGG 1911583 37 100.0 34 ..................................... CTTGCCGACCCCGATATGTGGGAGTCGGCGGCCG 1911654 37 100.0 37 ..................................... GTCATCACGTAGTCGAGTGCGACAGTCGGCGCGACGC 1911728 37 100.0 35 ..................................... GATGGCGTTCTGCGACATATTATCGCTCGGCGGTT 1911800 37 100.0 35 ..................................... GGCAAGCATACAACGCTATTGAAGGCCGCCCGGTT 1911872 37 91.9 37 ......................CGA............ GGCAGATTAGAGTCTTCAGTCTTGGCGTCACTGCCTT 1911946 37 91.9 37 ......................CGA............ ATGAGTGTGTCAGTCATTGCTGGTGCACCGCGAGGGC 1912020 37 91.9 36 ......................CGA............ TTCGAGGCGTTCCAACTGGGCTATTTCGGTTCGAGA 1912093 37 91.9 37 ......................CGA............ CGAATGGCGAGTTCCCGGCACAGATCGCATATAACGA 1912167 37 91.9 33 ......................CGA............ CTGCACCCGACCGCTCGACTGCTAAAGCTCCGG 1912237 37 91.9 35 ......................CGA............ ATCGACGCGGTGGGCGACGTGCAGATGAGCGAACT 1912309 37 91.9 36 ......................CGA............ GCTGGCCTCGGGGCCTTCGCCATCGCCTACGGCGGG 1912382 36 97.3 0 ........................-............ | C [1912404] ========== ====== ====== ====== ===================================== ====================================== ================== 49 37 98.8 36 GTCGCAGCAGGGAGAAAACCCAGACCGGGATTGAAAC # Left flank : ACTTCGAATACACAGTGACACGGCGAAAGGCGATCCGTCAGCAAGCGATCCTGCTTCGAAAGGCGATTACAGACGAACTCGACGCGTATCACGCACTCACATTCGACCGATAACCATGCGACTCGCTGTCGCCTACGACGTTAGTTCGGATTCGAACCGCCGGCAAGTCTATCGGACGCTCCAGCGATACGGTGCCTGGAAGCAGTACAGCGTCTTCGAGCTGGAGGTTAACAAAACCGAGCGCGTGGAACTCGAAGACGAACTCGAGTCTCACATTAACCCTGACGACGGCGACAGGATTCGAATCTACCGACTGTGCGATTCGTGTCTGGATGATATCTCTGACATCGGGGCAGAGCCACCTGACGAACAGTCGAACGTACTGTAGAATTTTCGTGGACCTTTTTGAAGTCTCTGTACAGCCCCGGTCGACGAACAGGGACGCGAAATTCACGAGCAGAGCAAGATTTATGATCCCTCTGGACGGATTTCGACCCCCT # Right flank : CGGATTACCGTCTTCAGCATATGCGCACTGGAAGACGACGTCGACCTGTTCGAGTGAGTCGGCGAAACAACTACAGGGACCAATATACAACGTATACGTATGACCACAACCATCCGAGTTTCCGACGACGTCAAAGATCGGCTCGAACGGCTGAAGCGCGACGACGAGACGTTTGACGAGTTGCTCGATCGACTCAGCCGAGATGAAAAGGATATCGAAGCCATCGCTGGCAGTTTCGATCGGCCAGAAGACGAGGGGCTGTCCGAATCCGTCATCCAAACACACGAGGAGCTAAACGAGTCTCTCGAAGATCGAACGGAGCGGTCTGAACAGTGATCGTGCTCGACAGCGACGTTGCGGTGAAATTGCTCCGCGAAGACGATCCGGTGGTGAAATCGCATCTGAGCCAGTACAGCAACGACGCCTGGGCGATCCCGTCGTTGGTCGGCTTCGAGTTCTTCCAGCACTACGAGCGGTTGGATGTCGTTTCTCAGACCCAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCAGGGAGAAAACCCAGACCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [13,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //