Array 1 333866-336454 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAFX01000003.1 Klebsiella pneumoniae strain CDPH3707 contig000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 333866 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 333927 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 333988 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 334050 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 334111 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 334172 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 334233 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 334294 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 334355 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 334416 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 334477 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 334538 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 334599 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 334660 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 334721 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 334782 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 334843 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 334904 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 334965 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 335026 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 335087 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 335148 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 335209 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 335270 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 335331 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 335392 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 335453 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 335514 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 335575 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 335636 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 335697 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 335758 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 335819 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 335880 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 335941 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 336002 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 336063 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 336124 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 336185 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 336246 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 336307 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 336368 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 336426 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 43 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //