Array 1 1948-4662 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJOL01000083.1 Tepidimonas thermarum strain AA-1 Tepi_ther_83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1948 28 100.0 33 ............................ CTGACGGCGGGACAGCTCGTCACGCATCGCCAT 2009 28 100.0 33 ............................ TATCGCGCGCTCCAGCGTCTGGCGGAAGGTGCG 2070 28 100.0 33 ............................ CTTGGCCCACATACGCCAGCCGTGCGTGCGGAA 2131 28 100.0 33 ............................ TGCAACACGTGGTACGACCCGCAAGAGGTCCGC 2192 28 96.4 33 ..........T................. TCTTGTCTTCGCCGACAACCACAGCTTCTTCGC 2253 28 100.0 33 ............................ TTCTTCGGGAACGTCCTCATCCTCAACAAATGG 2314 28 100.0 33 ............................ CGTTTGATTCTGCTGATCGTCGTCTGGCTCACG 2375 28 100.0 33 ............................ CTCTCCAAGGTCACGCGGACGCGATTGCACGTG 2436 28 100.0 33 ............................ CATGGAGATCGGCAAGCTAGGCACCGTGATGCG 2497 28 100.0 33 ............................ CATGGAGATCGGCAAGCTAGGCACCGTGATGCG 2558 28 100.0 33 ............................ CCTGCTGCGCACGCTCTCGCAGGGGCCGGTGGC 2619 28 100.0 33 ............................ CCAAGGCGCCCAACTTCTTGCTGGCGCGACGTA 2680 28 100.0 33 ............................ CTTCATCGACGCCACGCAACTGCTGGGCGACGC 2741 28 100.0 33 ............................ TGTATGAGCCGCACCGTGGCAGAAAAGCCGATG 2802 28 100.0 33 ............................ CCGATGGTACCTTGTGGTTATGGGGGAACGGGG 2863 28 100.0 33 ............................ CTTCATCGACGCCGGCGAGCACCGCCTGGGCGA 2924 28 100.0 33 ............................ CTTCATCGACGCCACGCAACTGCTGGGCGACGC 2985 28 100.0 33 ............................ GCTTGTGCCGCCGTCAACACTGCGCTGGCAATA 3046 28 100.0 33 ............................ CTACGACGCCAAGGCCTGCCGCGCATCCTGGCG 3107 28 100.0 33 ............................ CATGGCCCAGCTCTACACCTGCAGCCGCTGCAA 3168 28 100.0 33 ............................ TCAGGCCGAGCTCGCGCGCGCGACCGGCGTCGC 3229 28 100.0 33 ............................ CGTTGTAAGGCGCTGCATGGCCGCCCATCAAAG 3290 28 100.0 33 ............................ CCGAAGTGAACAGCGTAGGTGAATCCCACTCGG 3351 28 100.0 33 ............................ TGAAGCAACGCTCGTAATCGAACACGTAGCCGA 3412 28 100.0 33 ............................ CGACTTGAACAGGGGTAGGTTGCACGTCGTTGT 3473 28 100.0 33 ............................ CAGAGCGCGTAACGCCTGGACTGTTTCGGTCAC 3534 28 100.0 33 ............................ CACATGCCAGCCAAGGCGGGCATAGGCCAAGGC 3595 28 100.0 33 ............................ CTATTTCCACGACCTGTTTCAACGCGGCTTTGA 3656 28 100.0 33 ............................ TTTCAGAAGGTAGCCGGGCACTCATGCCCGGCG 3717 28 100.0 33 ............................ CCGATTGCACCTGGAAATCCGCGCATGGCTCAA 3778 28 100.0 33 ............................ TCAGGCGCTTGGGCGGTAATCTCGCCAGTCTCC 3839 28 100.0 33 ............................ CCCGCCCGCCGAGGCGGGTTTTTTGTTGCCTGC 3900 28 100.0 33 ............................ AATCGCAGAAAAACTTTTCTGCAAAAATCTGCG 3961 28 100.0 33 ............................ CTGTGCGCATGGTGTAATCCCCCTTCAGATTGT 4022 28 100.0 33 ............................ TATCGGTGAAGCGCTCGATGCCGGCCCAAATGG 4083 28 100.0 33 ............................ CCGTTCTAGTTTTTCCTGATGGTGTCGCGATGT 4144 28 100.0 33 ............................ TATCGAGCGATGCGTGGAAGCAGAAGGCCAAGA 4205 28 100.0 33 ............................ TCGCGTCCAAGCGGGTGGCGTAGCCTGCCAGTT 4266 28 100.0 33 ............................ CATGCTCGAGACTCTCATCACCCGCGGCCCGTG 4327 28 100.0 33 ............................ TTGACTACCTCACCCTCGACCCTGGACGTCGCG 4388 28 100.0 33 ............................ CTTCTACTGGCACCGGCGCGATCGAGGAGATCG 4449 28 100.0 33 ............................ CTGGGATCGCAGCGACCCCATGACCGACTACTT 4510 28 100.0 33 ............................ GTAGTAGGCCATGGTGGCTTTCCTTTCGTGGGT 4571 28 100.0 33 ............................ CGCGATGAGCTTCAACATCAAGGGCTTCGACTC 4632 28 85.7 0 ................A...T....TT. | TT,T [4650,4653] ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.6 33 GGCTGCCCCGCGCACGCGGGGATCGACC # Left flank : GGCGGACAACATCGAGCGGGAGGTGCGCAAGCGCGCCGCCGCTGAGTTCCGGCGTTACAAGCTTATCCCCAAGATGATCGAGCGCATCAAGGAGCTGTTCGATGTCCATGACAGTGGCGGTGACGCGTAACGTATCGGCACGCGTGCGCGGCTTTCTCGCGTCTGTCATGCTTGAGCTTGCGCCGGGCGTCTATAGCGCACCGCGCATCAGCCCAGCGGTACGTGAGCGCATCTGGACCGTGCTGGAGGAGTGTTTCCCCGACGAGCGCGATGCGTCGATCGTGCTCGTTTGGGCGGAACGCGCTATGCCGGGCGGGCAGGCGGTTCGGGTGCTTGGATCACCCCCCGCGCAACTGGTGGAGCTCGACGGGCTCATTGTTGCCAGGCGCCCCGTATCGGCATCGCCCGAGAAAACGGGGCTGGACGGTGTAAGCAAGAAAAAGGCCAACGTTCCTTAAAAATCTGGATTATCCTTGGCGGACAGCGAGTTAGTCGCAAGA # Right flank : TTTCTGTAAATTCCATTTTGCCGGTTGTCTGCTGGGCGGGGATCTCCGGCGCTACGCGCCTACGCTCCCCGCCCAGCAGACAGCGCGAGGGTGGGTCTGACGCCATGACTTCGAGAAAGGAGTGTAACCCTCATGGCAATACGAGTCGAAACCAACCCCTTGGAAGCCGCTTATGCGATCTTGCTCGAGAACGGACTGGATGGCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTGCCCCGCGCACGCGGGGATCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 17635-17298 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJOL01000054.1 Tepidimonas thermarum strain AA-1 Tepi_ther_54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17634 28 96.4 33 ..T......................... TCTAGAGTGATGTTGCGGTGCAGCGCACTAGTA TAA,A [17624,17628] 17569 28 100.0 33 ............................ TCATGGCGTCGGTGATGGTGATGGGGCGCAGGT 17508 28 100.0 33 ............................ CACGTTGACCCGCTGGCCGGACGATTCGACCTC 17447 28 100.0 33 ............................ CGGAGGGTTTCGTCCGCAAGGCACTGCGGCCCA 17386 28 100.0 33 ............................ TCACGCTCTCAATGCCAAGGATCACCTTGGACG 17325 28 96.4 0 ......................C..... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.8 33 GGCTGCCCCGCGCACGCGGGGATCGACC # Left flank : TTCCGCAATGCTCGCCGAACTCGACGACGAGTGGCTGACCGGCAAGGTCTATCTCAACTTCAACCTGTAACCCGGTTGTCATGACCACCCAACCGGAAATTTACAGAAAAG # Right flank : CCTTTGTGCGGCGCATGGGTATGAAGGGCTATGGCGCCAAGCCAAACGAGAAGAAGGTGAAGGAGCTGCAGCAGTTCCTGCTGTCGGCCGAGCCTGGAACCGTGCTGCAAGAGCCTGGGTTCACGAGCACGTCGTGGACCGGCGGTAGCAAGGTGCTCGGCAACAACGACATTGAGTGGGAATTCGTTGCTGGCAAGGGGGTCAAAATGTTCCCGGGCTGGCTGTCCGCGAACGCGAGCGAGGGCGAGGGCCTTCTGCCGCCGAATCAGCGGTACATGATCATCGGCGCTAAGAAGGTTGGGAAGACGGTCCGGGTGAAAGCCTTGTTGCTGCCGACGCTGATCTGAGGAAAAGAAGTATGCCGATACCCGATTCTGATGCGCTGATTGAATCCGGCTTTTCGACCGAAAAGCCTTTCTTGGGGTCGCCGTCCGTCATCGAAGGGCTGCTTCGCCGCGTGCTGTACGACATCACGGTTGCCAGGCGCGCGCAGCTCGAGA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTGCCCCGCGCACGCGGGGATCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //