Array 1 11592-9989 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOZ010000040.1 Holdemanella biformis strain S002_DM072 Hbiforme_S002_DM072_0039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 11591 36 100.0 29 .................................... AATTCACCGTAAGGCAAATAAATAGGTTC 11526 36 100.0 29 .................................... AATGTTTTCCACAATACTAATCACTTCTG 11461 36 100.0 29 .................................... ATTGGTTTTTAATGGTTTGGATCTTATTA 11396 36 100.0 30 .................................... CTTTAATGTTTATATTATCCTCTTTAACAG 11330 36 100.0 29 .................................... GAAAAGTAAAATTTATTTGTTAAAAGGTT 11265 36 100.0 29 .................................... TTTTCGTCCATGGTGTCCATTGTACTAAC 11200 36 100.0 29 .................................... TCATCTTTGAAGTTTTCAAACTGATCATT 11135 36 100.0 30 .................................... GGGAAGAACAAACTTTATTAATTGCAGTGC 11069 36 100.0 29 .................................... GATAAATAGAATACTTCCACCAAATTTCT 11004 36 100.0 30 .................................... CGGGCATGAAGAATATAGTTTTAAACGTAA 10938 36 100.0 30 .................................... GGTGAAACGTGCTAACAACATAATTAGGAA 10872 36 100.0 30 .................................... CATTCACCAACTCCAAACTTAGAAACATCC 10806 36 100.0 29 .................................... GCATTTGCAATAACGATTATAAAGAGCTT 10741 36 100.0 29 .................................... AGATGAAATGAGGTGATGATATGCTGCAA 10676 36 100.0 30 .................................... ATGTTTCAAATAGAAAATACTAATAAAGGG 10610 36 100.0 29 .................................... CACTTTCTTTTTTTTATCTAAAATTTGCC 10545 36 100.0 30 .................................... GTCTTCTTTGAATAGAACTTTTCACTTTGG 10479 36 100.0 29 .................................... AGGTGCTCCGTATGGACATTTTGTTGAGT 10414 36 100.0 30 .................................... TGAAACCAATTCAGCAATCGCAAGCGCTAC 10348 36 100.0 30 .................................... TGTCTAGGAACAAATTTCACACGAGAAGAA 10282 36 100.0 29 .................................... ATTTGAAATTATGCAACACAATGTCGCCG 10217 36 100.0 29 .................................... AACAGGATTGATTGATGAAGGATATACAG 10152 36 100.0 29 .................................... TGATGCGGCCATATCGAGCAAATTCAAAC 10087 36 91.7 27 .................................GTG TTTTTTTTGGCAAAAATTCTTATGGTA 10024 35 77.8 0 ......A...GA-..T................A.TT | C [10002] ========== ====== ====== ====== ==================================== ============================== ================== 25 36 98.8 29 GTTCTTGAGGATTGAATTTATTTGTATTATTTGAAC # Left flank : CAGATTTTGAGGTTTCTAAATTTTTATCAATGTTGGAAATAAACATAGGAGATACTCCAGTTGATCAACAGTACATTATGGTTTACAACTTGTTATTGTTTGTGAGTAGAAATCAATTTAATGTTGTATATATTGATTTTCCAATTACACAAACAGTATTAAAATGGTTGAAATCGTTTGATCAAGATAATATCCTGTTTCTTTTAAACAATGATTATATGGCTTGTGATTCTATTGAAGAATTAGAAAAATTTGCGATGTTGATTATTTCCAATAAAGATTATGTTGAAAAATATGAATACGATTTAAACCAATTTAATAACATATCCTATATACAAAATCCTTATACTATGCTTCACAAGCAGCAACAAACAGAAAAAAACATTCGATTAATGGAACAATTTGAAGATAAAAATACAACTTTTTATTTAACATTTAATGATACTTATACTCAAGATATACTGTAAATAAAGCATAAATATGCTATAATAAGGCCGACA # Right flank : TTATTTATCTGATGTTACATTAACTACCACATACTCACAAATACCCTCTGTTCTTATGGGAAAACCTCAACCAACAAGGCCTGAACTAATGATTTTTATGCAGTGCTTGAATGTTTTTTTTTTTCGTAATTGCCCGCAAAATCTGGTTGTAGATGGTAAGAGTAAGAGAGTGGAAACGTTTGTCCGTTATGGGTGTGTCCGCTGAGTTGAAGGTCAACGTTGTTTTTAATGTTTTCTTTTGTTCCTTGTGGTTGATGGTCTAAGATGATGTTGTAGGTTTTATTTGTTAGATGGTAGTCTTTTGTTTTCTTTCGGCTTTTGTTTGTGTAGTCTTTTCTACCAATTAGAATTATGTTATTTAAATGTACTTCTTGATCATTTAGAATGGTAATGTTGTTTTTAGTGATTGAGTTTATTTTTTGTGAATTATATCTTGTTTTCGTGATTGCCATAAACAGGGGCTACTTTAGTAAGTCTTCCGAGTTGTTTAAATAGGATTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTGAGGATTGAATTTATTTGTATTATTTGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 12824-13061 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOZ010000019.1 Holdemanella biformis strain S002_DM072 Hbiforme_S002_DM072_0018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 12824 32 100.0 36 ................................ ATATTATGGAAAATATTATTTATATGGGCGTATTTT 12892 32 100.0 36 ................................ AAAATACCTAAAAAAAGAGTGGAATAATTTTTACTC 12960 32 100.0 38 ................................ CGGGAGGTATAAAAATGATGAACAGAAGATTGAATGAC 13030 32 96.9 0 A............................... | ========== ====== ====== ====== ================================ ====================================== ================== 4 32 99.2 37 TGTGTCGATCCTTTATAAGTATCATATTTCCC # Left flank : CTCACCATAAGAAACAGGAACATTTGTTGCCACAACATATTCATTTGGCAATTGACGCAACGTATTAAACACCCGATTCTCACCACTTACTCCACTAGCCAAAATTCCAGCCTCATTCATCACATTTCCATGTTTATACATTAAATACACCAAGCTCAATACACCAAATCCAATCACACACCAAGACACTACAGAAAATGGAACCACCATCACACAAACAATCAAACCCAAAGTCAACAAGATCCCCATATTACGAATCCAACAAGCCTCTTTTACTAAACCATCATATTTATCTTTATTTTCATTTCGATTATGAAATACATAAGCCATTACTTATCACTCCTTTACTACTATTACATGTAGAAAAAAAGCAATAAATTAACCAGTAAAACAAAAATAAAGCATAAAAAAAAGAATACTATTTCTAGTATTCAGTAAAGCAATCCTATAAGTATCATATTTCCCAGGTTAAAACATGACTATTCTTAATTATCATGGAT # Right flank : CTTACTAAATATAGCACATTTTGGACTTTAGTTGATAAAAATATTGAAAAATGGCTGAATTTAGCCTGTTTTTTTCGACCACCTCGGTATTTTGTGGTGTTTTTTGTGCTCAAAATCCTTCAAAATAGGTCGATGGTCGAAAAACGTAGGTTTTAGTTCACTGGTTTTAAAATCATAAAGCCTAGTCTTTGTATTTCTATATTTGTATAGATTGTATCGTTATTGATAATGTTTATAAATTCATTTTGCATTGGCAACATTGTATTAAGAGTATACTCTTTTGTGTTGACTACGATATAGAGTGTTTTATTTTCATTAGCTCGTTTCATAATTAATAATTCATTATGATGGATCCATTCAATGCTTCCTTCATTAGCTAATACTGGATGTTCTTTTCTGAGTTTTATTAATAATTGAGTCATATAATAAATGTCTTCATAAGACTCCTTTGGTTCTTGCCAATTTGTTGGTCTACGATTATCTGGGTCTGAACCACCTTC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTGTCGATCCTTTATAAGTATCATATTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 24023-24257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOZ010000019.1 Holdemanella biformis strain S002_DM072 Hbiforme_S002_DM072_0018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 24023 31 100.0 39 ............................... ATATGAATGGTTACAGTACATACAAAGTTGTATTCCAGG 24093 31 100.0 36 ............................... TCTTTTTAGAAGAAAGAATTGAGTCATTGAGAAATG 24160 31 93.5 37 .........................T.C... CAGACCCAAACAATAGAAGTAACTATACTGCTCCTAT 24228 30 96.8 0 .........................-..... | ========== ====== ====== ====== =============================== ======================================= ================== 4 31 97.6 38 GTGTCGATCCTTTATAAGTATCATAGTTCCC # Left flank : CTGGATCCCAGTCGCATTGATCATATCCCAAATAATATGTTACTTTGAAATATCTAGCACCTTTTGAAAATAAATAGTCTACCATAGCTCTGAAATTTTCTTCCGGACTTTTGGATTGACTTTGGGTATCCAACACATATCGAGCATGGACTGCTTTTTGCGTTGAATAAGCCTTTGTTTGAATTAACTGCATATTCTTGTCCTTTCTAGACACTTTCAAAAGAAGAGATGTCGGCTAATATTACTTTTACAATTAGCCTTATTTATATTTATTTGAAATTAATTCGACTTGTATATAGGTCTTCATTTTCAGAATGATTCAAATTTGAAAGAAATACATCCCGAACAGCACTCTGAATATTTTCTGCCAATTTGATTTTATCTTCTGTGCTTATATTAGTGTTTCCTACGTCGATATGAATATCTACCGGTATGTTAAGACGAGGCAGCTCCATAACCCTTTCCATAATTCCGCAAAAAATCGTAGATTCTGGATACTT # Right flank : CCTTACTAAATATAGCACATTTTGGACTTTGATTGCGAAAAATGTTGAAAATCGGGTGGTTTTAGCTTATTTTTTCGACCACCTCGCTTTTTTTTGGTATTTTTAGGGCTTAAAATCCTTCAAATTAGGTCGATGGTCGAAAATTTTAATGGTTTGGTTGAATTATTGGCTTGGTTTTAACACACAATTGATGATTGATTAAAGAAAACTTATATCTTATTTATTTCTCCTCCCTTCTTTTTTTGTGTAGGATTCCTACAAGTCCTAGACCTGCTACCATGCTTGTTAACATGGATCCCATTACATTTGTATCAACGCCTGTATGTACAGATTCTTTGTTAGTTGTAACTTCAGTTTCTTTGGTTGATTGTGAGTTCAAGTAGTCATTTAATGCTTGCATAGCCTTATTGTAGTTGGTATCGGCATCTGTTTTTGCTTTCTTGGCATCTAGATACAACTCGTATTTTGTTTGATAATTTGCCTTGGCAATTTCTAGTACG # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCGATCCTTTATAAGTATCATAGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 26708-28180 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOZ010000088.1 Holdemanella biformis strain S002_DM072 Hbiforme_S002_DM072_0087, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =============================================================== ================== 26708 31 87.1 38 C.AA.C......................... GTTACTGATGAAGAATTGGCTGAAAACGTTGAAGTTGG 26777 31 100.0 36 ............................... TGCCAGGGAAATGGTTCTTACTGTCCAGAAAAATGG 26844 31 100.0 40 ............................... GGACAATAAAGGTTCAATTGCACTTCTACCAGAATGTGAT 26915 31 100.0 34 ............................... CAACCTATGCAACAGCAAGGAATGTATCAACCTG 26980 31 100.0 63 ............................... AGTATAGAAATGGCAGTAAAGCCGAATGCCGATGTAAATCGTGGAGAGAAGGAATATAGAACT 27074 31 100.0 37 ............................... ACGAAGTTTATGTTAAATCTTCTCCAAACGGATATGT 27142 31 100.0 38 ............................... AAATAGACCTGACGTGCACTTCCCCGACCAACTTGTTC 27211 31 100.0 37 ............................... GGTGTTGTAATCGTAAAGAAACTTATGATCACAGATT 27279 31 100.0 34 ............................... TCAATCGTTGTTTAGCGCTTGTTCATGGATTGTC 27344 31 100.0 38 ............................... CGAATCTTTAAGCTTAAGAGCCGAACTCTTAAAAGAGG 27413 31 100.0 36 ............................... TATCTGAAATGACACCATTTGCTGGTACATATTCCA 27480 31 96.8 36 ............................T.. CATTGAGACAAGAGAATCGTTGTTGACAGTTGACTT 27547 31 100.0 36 ............................... GATGATATTCGCTTGATGGCTTCAAGTCCTGAATTA 27614 31 100.0 37 ............................... ATATCTTCTATAACCCATTTACTGATAAGGTTTATTT 27682 31 83.9 27 ........................G..CAAT CTGTAGAACTAAATTCAAAGGATTCAA Deletion [27740] 27740 31 96.8 39 ............................T.. ATGATGAAAGCAAAAGAAATGTTTGAGAAATTAGGATAT 27810 31 100.0 37 ............................... TCAAAAACAGATGGAAGGGAAATAACAAAATTTCTGT 27878 31 100.0 40 ............................... GTCTTGCATCAGGTCGACGCTCTAATGAAATTCTGTTAAC 27949 31 100.0 33 ............................... TTTAACAAAGGACGAAATACAGAACTACGAATT 28013 31 100.0 38 ............................... AAAAAGCCTTTGATAAAAAAGAAGAAAATGTCACTGTA 28082 31 100.0 37 ............................... TGCAGAATACTACTATGAAGAAGCAACCCTCAAGTTC 28150 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =============================================================== ================== 22 31 98.4 38 GTGTCGATCCTTTATAAGTATCATATTTCCC # Left flank : CAACTCTTTCCAATTCAACCTTTGTTGCAGGACGATCATCAAAATCATCTACAAGCACACAGTCAAATTCTTTTCCAATTGCACTCTCCCATAAGAATGATGGACGATTTAAATAAGTAGAAATTATTTTCTGTTCTTTTAAAATTTTTGCGACCCCTTGCGCAAACAACGCTGCCTGCTCTTCATCCTTTGCGACCACCAACATAGTTGGATAGACCTTTTTCATGTCATCGCCTAAATCACTTTTAACATAAGCAATAAATTCTTCTAATTCTTTCATTACTGATTCAGGTTTAATAAACCCCTCAAAGACTTTATTCAAGCTATCTACATCCATGTCTAACTCCTTTTTCATTATCAAATATAACCAAATTATATTCTATTCATTAAATAATTTATAGCTATTCCCAATAAATATAATAGCAATCCTATAAAAGTGTAACAAAAGTTAAAAAGTCTGTTTAAATAAACAGACTTTTTAAGTAATTTCAATCCACTAT # Right flank : CTTACTAAATATAGCACATTTTGGACTTTGATTGATAAAAATATTGAAAAACAGCTGATTTTGGCATATATTTTTCGACCACCTCCTGTTTTTCGACTATTTTTTATGCTTAAATCAGCTCGAATTTGGGTGATGGTCGAAAATTTAGTCATATTCTGGTTGTGAATGTATAACCATCTATCATTATTTCCTCCATTTCCCCGCGCCTAAAGTCGCGCGGACACAAATACTTTATTAATAAATTCTTTTTCCACGCCTTATGTGTTACCATGAAAAAGAGGTGGTACACGACAGAGCACGTGAGAGTGAGTAGGTATTCTACTCAATAGAATTAACCTGCATTATTATAAGTTGCCGTCATCATTTCAAGCACAAATAATAGGGGACGCCAAGCCCGGACACTTAAAATTGTTTAATCAACTGTTGTCGATTCGCTTTGATGACCGTCAATGCCACTTCTCCTTTTACAGAAAGGAGATTTTTTATGACTTTTAAAGTTG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCGATCCTTTATAAGTATCATATTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //