Array 1 61005-62751 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYN01000170.1 Heyndrickxia sporothermodurans strain B4102 NODE_331, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 61005 32 100.0 36 ................................ ACCAGTATCGCAGAAGTGCTAGCAGACCTACAAAAC 61073 32 100.0 33 ................................ ACGAAATGACTTATTTTATTAACAAATCCTACT 61138 32 100.0 33 ................................ TTAGATGTTACACAGTAGAAACAAATTGTTGAT 61203 32 100.0 33 ................................ CCAACCATCGTGTATTACGATCAATCCACTCCA 61268 32 100.0 34 ................................ CGTATATCATGAAAGCTGTAGCCGTGGCTCAGAA 61334 32 100.0 35 ................................ GTTTAAATACAGTTTAAAAAGAGTTTAGGAGGGAT 61401 32 100.0 33 ................................ CCCAATACGCTAAAGGTACAAAAGGACATCCAG 61466 32 100.0 34 ................................ GACAATATCCAAAATCTGAAAGACATACACTTGC 61532 32 100.0 34 ................................ ATGAAGCACGCGAATTGTTATCGGCTGCAACAGA 61598 32 100.0 33 ................................ GCAAATGCTTATATGAAATTTAAAGGTGTAACT 61663 32 100.0 34 ................................ GTTTGAACGGATTCCAATTCCTGCAGCTGACCTT 61729 32 100.0 33 ................................ CGATAATGTCGAATCCTGCTACTTCATACTCTT 61794 32 100.0 34 ................................ TTGGAGGGTTTCGATTGCATCGGGTCCATGTAAG 61860 32 100.0 34 ................................ TATTACTGCCATTAAAGCTAGTTGTGGTAATTTT 61926 32 100.0 33 ................................ ATCCCAATTGCGATCGAAACATCCATCGTTCCA 61991 32 100.0 34 ................................ TGGAAAGAAGGAGAAACACATTTTATTGGGAAAG 62057 32 100.0 34 ................................ TTCGCCTTTATCATTGTAGTTTGTAACCCTTACA 62123 32 100.0 33 ................................ TAAGCCGCCTTCCACAGTTGCTTTCAAAATATC 62188 32 100.0 34 ................................ GTGCCGAATTCGTGCCGAATGATAGATTTATGAA 62254 32 100.0 36 ................................ AACATTCCCCGCTTCAACCTCCAAACGAAAATCATC 62322 32 100.0 34 ................................ GGAAACCGTCATTATTATTGATAATGTAAGTTTT 62388 32 100.0 34 ................................ TAGACTTTACTAAAGACAAACGATTTTTTATTGC 62454 32 100.0 36 ................................ CTTTCTGTCGTTTACCAAGCAATTGATCTGACTAAT 62522 32 100.0 34 ................................ TCATTTGTTCTTGCAATCTTGCAATCTCTTTTGC 62588 32 100.0 34 ................................ AACCGATGTATTTTTAGAACTTAGTGAGCGTGCA 62654 32 100.0 34 ................................ AAAAACCCAAGCAATTAAGAAGGAGGTATCAAGT 62720 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 27 32 100.0 34 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : TAGATGAATATCCTCCTTTTTTATGGAAGTAGGTGCATTAATTGTTAGTGTTAATTACGTATGATGTAAGCACGGTTCATAATTCTGGTCAAAAAAGATTAAGAAAAGTTTCTAAGTTGTGCCAAAATTACGGTCAACGAGTTCAAAACTCGGTGTTTGAATGTGTTGTTGATGCTGCTCAATTTGCTACTTTGAAAATAGAACTGACTAATATCATTGATGAAAATCAGGATAGCCTCAGATTCTATCAACTGGGTAACAATTATAAGAATAAGGTTGAACATATTGGTATAAAGAAATCAATTGATTTAGAAGCGCCATTAATCTTTTAGTGCGGATGTATAGTGCACATAAAATTCCCACTTCATTCGCACCAGATTTTTTAAGCTACATCTCCTAAATTTTAGGATTAATTATATGTGTTCTTTATTTTAATAAAGAAAATAGTGTTTTTTGGATCGAAATAGACTTTTTTTATGTAACTTTGACCAAAAATCGCT # Right flank : TTCATCGGATAAAACCCTTTTCGATGGCGTTAAAGTGTAAGCCCCCATTCAAACAACGCATATAAATGATCAGCACCCCTTAGTACAATAATCGTATCAATTAAGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2921-115 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYN01000100.1 Heyndrickxia sporothermodurans strain B4102 NODE_113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2920 36 100.0 29 .................................... CTATTCTATCGACGAAGCCTACTGCGAGA 2855 36 100.0 30 .................................... TCATCAATTAGTTGAATTTGTCCATCTTCT 2789 36 100.0 30 .................................... AAGCCGGAATGACAGGAATTGCTCTGGCGG 2723 36 100.0 30 .................................... GGCGTGTCAGCGTAGTCCATTCCGACGTAA 2657 36 100.0 30 .................................... TCATTCATCATATTAAATGCTTCCTGTGAG 2591 36 100.0 30 .................................... TTAAGTGACGTGTTACTTGGTACTGTCTGG 2525 36 100.0 30 .................................... AGACAACTAGAGGGTAACTATTCAGCACGA 2459 36 100.0 30 .................................... AAATCGGTTTTCATAATTTCTTCAATTGCA 2393 36 100.0 30 .................................... ATTGATTTCGTGAGTTTCTTTCATATTGAT 2327 36 100.0 29 .................................... TTAAGCCTTATTTTAATTATTTCCCAACA 2262 36 100.0 30 .................................... CTTCTCTCCAATTATCAGTTCTTCTACATA 2196 36 100.0 30 .................................... CTTCAAATGATTTAGCAAACGTCTTTCCAG 2130 36 100.0 30 .................................... TCTCGCTTAGTGAGGAAGAACGTCAAAACT 2064 36 100.0 30 .................................... TATTATAAGTTAAACGTTGAGGATGGGATT 1998 36 100.0 30 .................................... CAGGAGATAAAGATAGTGTAAATGAATCCT 1932 36 100.0 30 .................................... ATAAATTAAAAAAAGAGTTTAATATCGAAA 1866 36 100.0 30 .................................... AATCTCCTGATATGGGGGCAACTATTCCAT 1800 36 100.0 30 .................................... TCACCTCATACGCATTTGATGTGTGTATGG 1734 36 100.0 30 .................................... TTGCATTAACCAATGAAGTAGAACAGAGGT 1668 36 100.0 30 .................................... AAAATCTAAAATATCAATTAGATAGAATAG 1602 36 100.0 30 .................................... TACCTGATCTGTAACAGGTGTTTGTCCTAG 1536 36 100.0 30 .................................... TATACAATTACTTTGTAGTCATAGTGATCT 1470 36 100.0 30 .................................... AAATCCTATGCCGTCATAATCGCCTTGTAA 1404 36 100.0 30 .................................... CATGTCTTTAGCGGATATGCCCTCATCAAC 1338 36 100.0 30 .................................... TATTGGATTTATCAAAGCATTCTGTTTCAG 1272 36 100.0 30 .................................... TTTCATAAATATCTTTCCAGCCATTTCTAG 1206 36 100.0 30 .................................... AACCTTGCTTGGAGAAAAGCCCTTTCGGGC 1140 36 100.0 30 .................................... AAACTTGAAAAATTAGGTTACTTAATCACG 1074 36 100.0 30 .................................... ACCTAAGAGCGATAGGTGCAAGGAAAGATA 1008 36 100.0 30 .................................... CTTTCGCAAAAACGAAGATGGTATCATCTT 942 36 100.0 30 .................................... GTCAATGGAAACAGCCCGCGCGTCTTGCGT 876 36 100.0 30 .................................... AAGGCATGAATGAAGCCAGAGAAGAAATGA 810 36 100.0 30 .................................... CAATAGTTACTAATCGAACACCGTGTGCCA 744 36 100.0 30 .................................... TTAACCGCACGGATAGATGGCATGCCGCAC 678 36 100.0 30 .................................... AACTTCCTGTGTACCCCGTCCGGTGGTCAT 612 36 100.0 30 .................................... CAAAGCGCTCATACTAGCCGATTATCTTCG 546 36 100.0 30 .................................... AATTTTCTTTGTAGTTGTCCTTGATGCTGT 480 36 100.0 30 .................................... TTCTGAACGATAGCACAGGCGGTTTTGGCG 414 36 100.0 30 .................................... CAAAAATGAAAAATACTTATGTGTTTTCAA 348 36 100.0 30 .................................... TCACTTTTATCCCTCCACTTGAAGCCGACT 282 36 100.0 31 .................................... TTGGTGTTATTGGCATCGACCCCGTTCCATT 215 36 100.0 29 .................................... CCTTTGATGCTTGAATCATCGTACCTTCA 150 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 43 36 100.0 30 GTTTTGGTACTCTCTCAGTTTTCGGTATAGAGAAAC # Left flank : TATTTGCGGATAAATCGCTCGATAAAAAGAAATTAATAATAATTGAGCTTCCTGAGTTATTTGCCAATCCTATTAAAATAAGTGAATTTACAGAAATGGTAAATGAATTTGTAAAAAAAGGAATTCGTTTTATAATTATTACACAAGAAAATATTAGTAAGAATGAAAACTTTGTAATTAATCAACAGATAATTAACAGAGCAAAAATGGAACATTTGAAATTTAAAGTAGTAAATGAATTACCCTTTGTTTGTGAAGATCGTGTATATGATGAAGCAATTCAAGAATTAATCAAAGCTGTGGATAACTTTAATAAAAACTTCCAAAAACCAACTTTGACTCAAACAAATAACGAGGCAATTCAAATCATTCAATTTGTGATTCTTAAACATCTTAATATTAAAGTGGACCTTGAATTTACGCGGATATCACCTAATTTAGCGGAGTACATAAAATCATATTCGTAAAGTGAAATTACATGTGGTAAAATTAAATTTGAG # Right flank : CCTACTGCTCAACGTTTGGAAAGAGAAGGATGTTTTGGTACTCTGTAAGCCCGAATTATAAAAAATAAGTGTACCTTTCGGTACGCATCGTAAATAGCCGTAAATTCTGACTTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGTACTCTCTCAGTTTTCGGTATAGAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 105-338 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYN01000007.1 Heyndrickxia sporothermodurans strain B4102 NODE_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 105 36 100.0 30 .................................... TCTTAATGGGTAGTGAAAACCATAATGGGT 171 36 100.0 30 .................................... AAGCATGCGTTATAATCCTTTAGCTTATGT 237 36 100.0 30 .................................... TTTCTTTAGACGGTAACGGTACTATTGACC 303 36 97.2 0 ............C....................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 99.3 30 GTTTTGGTACTCTCTCAGTTTTCGGTATAGAGAAAC # Left flank : AGTATATAGATTAATCTGGAGGAATTTGAAAAAAATATTTGGTTTTTGGAGGAAATAAAGTGGCTATTTACAACAGTACGATTACACTATGTTTAACGTACTAGG # Right flank : CTGGTACTATATTAAGAAAATAGATACGGATTTTTCTACCGCGCTTTCGCTTGGTGGCCTTTATAAAAAAGTTTAAATAAAGAGCGGTTTAAACTTTTTATAAAGGTAAAAACCTCCGAGGAAAATGATTATACAGCCTTATTTTTGGTTGTTTACCTTACTTCTTTAACCAGCCATTCAAAGTATTCACGTTTGCGCCCACTTCCCTGGCAACATGAGCTACAGCTTATTGTTTTCAACAATGTACTTTCCGGTTTCAATTTTTAACTCATCTTCGAATTGTCTACCTACCATTCTACAAGAAAATACTCCGATCCTGTTATTGACAAACCTCGCTACAATGCTATCATAAAAATTGATTGAATAAGATGAAAATTATTCCAATATAGTTTTCTTGATTAATTCCGACTATATTTATTATTGAGAGTTTTAGGTGGTGAAGCAACATGAGTGAAACTTGGTATTTTATTGATTCCGGAGTTCAATCTCCTGTATTCAAT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGTACTCTCTCAGTTTTCGGTATAGAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 126-939 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYN01000014.1 Heyndrickxia sporothermodurans strain B4102 NODE_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 126 29 100.0 38 ............................. TTTATGAAAGGAGGTTAGATTATAGTCCGAACATGGAC 193 29 100.0 39 ............................. TTGGTAAATAGGAATACCTCTATCAGCCAATTGGTTTAG 261 29 100.0 37 ............................. ATGTCCGATACATATTTGATTACATGACCGTATTCAT 327 29 100.0 35 ............................. TAAATATCTTTCCGACCATACCCGGTACATCTTGG 391 29 100.0 36 ............................. TCAAAAAAGCTTGTACTATTTTCAATTGTGGATAGC 456 29 100.0 36 ............................. CAGGTATATCCGATAGACACACTTCGTAGACATCGA 521 29 100.0 36 ............................. GACACCAAGTCTCTATATACCTTATAGAACTCTTTC 586 29 100.0 36 ............................. TACAAAAACTTTGTTTGCTTTATGCTAGATTAATAA 651 29 100.0 35 ............................. AATAAGGTAGCGATATTGATTGAATCTAGTCCTGA 715 29 100.0 35 ............................. TTTTGATTCCTTCTAAAACGTTTCCGAAGTTTTGG 779 29 100.0 37 ............................. TAGCGAGTTGGGCGGAACGATATTCTCTACCGATAAA 845 29 100.0 37 ............................. CAAGCATATTTTGCGAGATAACTTTAGCATTAATATT 911 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ======================================= ================== 13 29 99.7 36 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : GCCTCCTTGGTACATTAAGTAGTATAATATTTATTACTCTTACTGTCCAAGTTCATTTAGGGGCTATAGAGGTAGTGGGATATAAAGAGTTTCTTCGGCATACTGGCTTTGATGTAATTTACCTCG # Right flank : ATTATCGACATAATGGAACAAATAAACTGCTGTAAGAATGAGAAAATACATAGGGATAATCTTAAAAGCCCATACTAAACAATTAAAGGAATCGTTTCCAGATATCATCCGTGTATCTATTAACATGCCAACTGCTAAAGGATGAGAATCGGTTGAAGCATAGCCTTTAAATTATGTAATAAATCATCTTCAATCTTTTTCCATCGTACTCCCCATACAACAGATAAAATAATCACCGATACTCCAGCAAAGATTAGAACAATCGTTGAAGGAGCTCCAAGATAAAGAATCCCGACAAACATAACTGCAAATGAAACAATCAGTAATGTAATAGATTTCCATGTAGACAAAATTGGATCCATCTAAGTTCCCCCAAAATATAAAAGAGGGATAAAGCCCTCTTTCTTTATAATGTTTTTACAAGAATACTAGCGATAATAACTGATGCGACGGTGACAGTTGTAAAGCCTGCAATCAGCATAGGTGGTGATAGTTCATTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 498-68 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYN01000135.1 Heyndrickxia sporothermodurans strain B4102 NODE_172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 497 36 100.0 29 .................................... TGAAATAGATAATGAATTAGTAGATGAAA 432 36 100.0 30 .................................... AGTCCAACATCTTTTTCAAATGGTTGCCAA 366 36 100.0 30 .................................... AAAGCGAACTTTCACACCGTCTAGGTTTTT 300 36 100.0 30 .................................... GCAAGCGTATCTTTGCCCATTCGAGGAGCA 234 36 100.0 29 .................................... CGTTGAAAGGGGATAAGTAAATGCGAAAT 169 36 100.0 30 .................................... TTAATTGGTAGGGGATAGAATCATAAACTT 103 36 91.7 0 ...............................GT..G | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.8 30 GTTTCTCTATACCGAAAACTGAGAGAGTACCAAAAC # Left flank : TCCTTAATTGATACGATTATTGTACTAAGGGGTGCTGATCATTTATATGCGTTGTTTGAATGGGGGCTTACAGAGTACCAAAACACCGCCTGTGATTGATGATCTTATATAAT # Right flank : GCCCCCATTCAAACAACGCATATAAATGATCAGCACCCCTTAGTACAATAATCGTATCAATTAAGGAG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTCTATACCGAAAACTGAGAGAGTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 868-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYN01000098.1 Heyndrickxia sporothermodurans strain B4102 NODE_107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 867 29 100.0 36 ............................. ATGATTGAAAATCCAATTTCAGGTCTGACTTTATCC 802 29 100.0 37 ............................. GTGCTTGGACTAATTCAGCGAAAATGTTTGGAAAAAC 736 29 100.0 35 ............................. ATAAAACAGGTATTTCTCAGGGAAAAAAGTAAAAC 672 29 100.0 36 ............................. ACGGTCAAGGTGGCTCAAACCCTTGGTATATAAGGC 607 29 100.0 35 ............................. TGTACAATTTGTACTTTTGAACTTCTTCCCGAATA 543 29 100.0 36 ............................. TTTAGAGAAGGAAACACAAGGACAGTAACTGAATTT 478 29 100.0 36 ............................. TTTTCCATGCCGCCAATTGACTTTCCAGCATTTTTG 413 29 100.0 38 ............................. TTTCAGCTTGATTAACAATATCAAACTTTTGTTTAAAA 346 29 100.0 35 ............................. ATGTTTGGCTTGTAACCCAAATAGGCAACATCCAC 282 29 100.0 39 ............................. CACTCTCCTTTTCCATTAAAATTCAATTTTTAATGTGAA 214 29 100.0 35 ............................. TACTGTAAAACCTCCCGATTATTTCTTATAAAACT 150 29 100.0 35 ............................. AAATAAAAAAGCCCTTATTCGGCTTTAGTTTCTTC 86 27 82.8 0 .................C..-..-...CC | ========== ====== ====== ====== ============================= ======================================= ================== 13 29 98.7 36 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : GTATATAGATTAATCTGGAGGAATTTGAAAAAAATATTTGGTTTTTGGAGGAAATAAAGTGGCTATTTACAGCTTACTTAAAAAAAATGGC # Right flank : CCCCGAATTTTGGACAGTATTTCTCTTAATCTCACTTTATCTTAAAACTACATTCTTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 1989-93 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYN01000019.1 Heyndrickxia sporothermodurans strain B4102 NODE_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1988 29 100.0 36 ............................. ACTGATACACTTGCTGAATTTGTTTCTGAAAATCGT 1923 29 100.0 38 ............................. GGGAACAATTCTCCGTTTACATCCACTTTGTAGACTCT 1856 29 100.0 36 ............................. CCAATAATAAATTATATTAATCTCACATTATATTTA 1791 29 100.0 35 ............................. GGAATTGCTATAACAGACCACGAAACTTTATCTTC 1727 29 100.0 37 ............................. GCAATCTGTAAAGCGTTAAATTTCTTTAACTCAAAAA 1661 29 100.0 36 ............................. CCGATTAAAAGTCGTATTGTTGCTCGCCTTCCTGCG 1596 29 100.0 36 ............................. CTACTTTATCCGTTAGCATACCGTGTGCCTGCAATA 1531 29 100.0 33 ............................. ACGAAAACGTTGATCCATTGGATTACGCTAAAA 1469 29 100.0 36 ............................. CGGTTCATCAGCTAACGGGCGCGAGCGCGTGACCCC 1404 29 100.0 36 ............................. GTTGAAAAAGGTCTACCCATTACTGATGGGGTTAAA 1339 29 100.0 36 ............................. TTAGACAAAAATAGAGAGAGGGCTGGTCATGTGAGA 1274 29 100.0 35 ............................. CTAAGAAAGGAGTCTACTTCTTGCATCACCTTGTT 1210 29 100.0 38 ............................. TCCTGGAACTGAAGCGGAAGTATATACTGAACTTTCTT 1143 29 100.0 36 ............................. ATCAAACAACTAATTATATATTTAATTACTTTATAA 1078 29 100.0 38 ............................. TTAAAAAGGTAATTGGACTATGACTCTTCTAATTTTTA 1011 29 100.0 39 ............................. TTTTCCCACGACAATCAACTCCTTCGCTTTTTCTGTCAA 943 29 100.0 36 ............................. CAATACGAGCGTGTATGACGTTTTCCTTCAGGCCTA 878 29 100.0 37 ............................. TGTACAGCTTTACGAGATAAGTGCCAAGGAGCATTAA 812 29 100.0 37 ............................. TCCCTCTATGCCTTTACCTGTGAAAACAGCGAATAGT 746 29 100.0 37 ............................. TTTCTTTTAAATAAATCTTATCAATCAACATATCCAA 680 29 100.0 36 ............................. CTATTCCTTGTGGCTCTAGGGATTAAATGGTTTTCC 615 29 100.0 35 ............................. GAGGTGAGAGAATGAGCCTATTAGGAAACCTCACA 551 29 100.0 37 ............................. TTTTATGATCACGGTGTAGATCGTAGCCGTGTTAGAT 485 29 100.0 36 ............................. ATTTGAACAAGTGCTTGTGAATACGGAGGGCTTTGC 420 29 100.0 36 ............................. CCCATTGACGAGATACCTTTGATTAATCCGTTGATG 355 29 100.0 36 ............................. TTAGGAGACACTGAGAAGTATGGAATTAAAGAAACG 290 29 86.2 8 .....................T.T...TT GTGAGAAG Deletion [254] 253 29 100.0 37 ............................. CTTTCAAGTGATGGACGTTCTGTCCTCTGCTGTACTT 187 29 100.0 37 ............................. AGAAATGAACTTGGTTAACCAAAATTTCAGTTACCCA 121 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 30 29 99.5 35 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : TGAAAGCGTGGTGGTAACATGTTTGTAATTATTACTTATGACGTGGGAGAAAAAAGAGTTAGTAAAGTTTGCAAAAAATTAAGAGCTTATTTAAGATGGACACAAAATTCAGTCTTTGAAGGGGAAATCACAAAAGGAAATTTAATGAAATGTTTGAATGAAATTCAAAAAATAACGAATCCAGAGGAAGACTCAGTTTATTTATATCAAGTGGAAAATCCTTATCACATTCAAAAGAAAATATTGGGACAAGAAAAAGGATTTGACGAATTATTTTTATAACTAGAAGGGAAGACCATCCACTTTCAATAAATTTGCAGTAAAGCTATTTTGCTTAAAAAGTAGCTCAAACCTTGATATATATAGTATATTAATACATATTACCAATTTTAAAATTTTATGATTGAGGGCTGACTGCAAAATTTGTAATAAAGGTAGTTTTATAAAGTCGTCTCTAATACTGATTATTATTGGGTTTTTAGGATGTCTGTTGGTAAGGG # Right flank : GAAAAGGTTCCGCATCGCGCTTACTGTAAACGAGCACATTATTCCGGATACACTTTTTCAAATTACTCCAGTCAATTTACCGAAATAATGTGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //