Array 1 57332-53019 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB316629.1 Xanthomonas translucens DAR61454 scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 57331 31 100.0 33 ............................... ATGGCTGCACCTCACACCGCATAGTAAACCAAA 57267 31 100.0 36 ............................... TGTGATCTGCCAAGTGCGCCAGTTAAGGTGCCGGCC 57200 31 100.0 33 ............................... TTTTACAAATTGAGCGGATCTGTAGGCCATATG 57136 31 100.0 37 ............................... CTAACGAGCGCGTCATGGCAAAAGTTCGGCTAGTGGA 57068 31 100.0 34 ............................... GATATTGAGGGGCCGGGGGTATACACCGTCACGG 57003 31 100.0 33 ............................... CCACAAACTACTCGATGTACTCGGACAATGCAG 56939 31 100.0 34 ............................... ACCTTCTGGACCCGGGCCAGCACGTTGTGCCGGC 56874 31 100.0 34 ............................... TGGTGCAGACGCGCAACCCGCCAGTGTGCCCCGC 56809 31 100.0 34 ............................... CTCGGCCGCCGGCCCGTCTTGCGTTGGCCTTGGT 56744 31 100.0 35 ............................... AAGAACGCCAAGACGCTGACGATTCCGCTGTACTT 56678 31 100.0 36 ............................... ATCGCGGGTCATGTTGCAATTATTGACCATGCTTTG 56611 31 100.0 36 ............................... CGCCGCTGCTTTCATCAATCCGCTCACCGTGGGCGC 56544 31 100.0 35 ............................... AGCATGTGCTGGCCGGGAGACCGCAGACCTTCCGC 56478 31 100.0 35 ............................... GTGGTATGCGGCCCCGCCCAGCTCCGCGAGCAGCA 56412 31 100.0 36 ............................... TGGGAAGTGAATCCGAACACGCGCCGAGACTCCAGG 56345 31 100.0 36 ............................... ATGGGCGAAATCAAGCACACCGAGGACGGCAAGTAT 56278 31 100.0 36 ............................... ACCATCGAGGCCGAGTTTAACGGCATGTACGTGGAC 56211 31 100.0 36 ............................... ACGTTCAAGTGGACGAGTAGGTTCCACAAGTCGGCG 56144 31 100.0 34 ............................... TTGTCCATCGCGCAGGCGCGCTTAATGACCACGC 56079 31 100.0 34 ............................... TCCTGTTCGAAACTGGGGGTGTGGTTGCCGATGA 56014 31 100.0 34 ............................... TACTACTGCCGGGCCGAGGCACTGGTGGCGGCGA 55949 31 100.0 36 ............................... CGGTACGGGCGAACGTCAGGGCAATGCCGTTGCCGG 55882 31 100.0 34 ............................... AAGTGTGCATCGCCGTGGCCCCTCTTGCGAAGGG 55817 31 100.0 33 ............................... AAAGGGGAGTCAGGTTAAGCACTTCGCGCAGCT 55753 31 100.0 37 ............................... GATTCCCATCTCTTACAGTGTGAGAGAGAACCGGAGC 55685 31 100.0 34 ............................... GATAACTCGAGTCGATTCCGAGATGCGCATGATC 55620 31 100.0 35 ............................... TGAACACGGTCGCTGAAGAACTCGCCACCAGAGAG 55554 31 100.0 36 ............................... CTCATGGCAGGCCTACAGTCCTGGCAGCGCGGGACG 55487 31 100.0 34 ............................... ATTCAACACCTGCATCACCAGCCCGCCCTACTAC 55422 31 100.0 34 ............................... AGGTTTCCGCCGTAGCGAGGGGCCGTCTCGTCGA 55357 31 100.0 35 ............................... CGCCTGCCCTTTGCCAGATTTGGCGGCGTCCAGCA 55291 31 100.0 33 ............................... CAACCCGAGCGGATCTGTAGGCCATATGCGCGA 55227 31 100.0 35 ............................... GTGCGTACTTGGCCGACCGCCGGGCTACGCGCGCG 55161 31 100.0 35 ............................... TTCCGCATGCCGTCCTCTCCGAAATGCTGCGTGAG 55095 31 100.0 34 ............................... CACTTCGCGTGCTCTGGGTGTTTGTCGTCTTTGG 55030 31 100.0 37 ............................... CCTCCCAACTGTGCCGGGCCAGGGCCACCATCGCCGC 54962 31 100.0 35 ............................... CGAATACGGCGCCTGAGGTAATCCCGGTTGTGTCT 54896 31 100.0 36 ............................... CTGGGGGGTTTTGGGCGCTGGGGGTCCGCGTTGAGA 54829 31 100.0 35 ............................... ATGGGCGAAATCAAGCACAGCGCCGATGGCAAGTA 54763 31 100.0 36 ............................... GTCTCCCGCTTCGTAGAGGAGGGTGTGCGCGGCAAG 54696 31 100.0 35 ............................... CAAAATTTCATTACGATGGACGACATCGTCACCGA 54630 31 100.0 37 ............................... ACCTGCTTGCGGCGCAGTTCGGCGGCCTGCAGGTCCA 54562 31 100.0 36 ............................... ACGGCCCTGGCCGAGCGGCAGAAGCTGTTGCTGGCG 54495 31 100.0 35 ............................... AAGCGCGACAGCAGCAAGGCCGGGAACCTGCAGCT 54429 31 100.0 35 ............................... CGCAGTCTCTGGCCGGAGATTGAGCTGAACCGCTC 54363 31 96.8 35 .....................T......... TGTACAAGGCGCACAGGCTAGCATGGCTCCATGTC 54297 31 100.0 34 ............................... TCGGATGTGGCAAGAGCGGCGTCGTCCAGATCCG 54232 31 100.0 36 ............................... CGGGACGCGGCGCTGGGTGTCGTGGACGCCGCGCGC 54165 31 100.0 33 ............................... ACAGACCTGGCCCAGCGGCAGAAGCTGTTGCTG 54101 31 100.0 33 ............................... ACGGTGATCCGATGCTGGGCGATGTCTGGGATG 54037 31 100.0 35 ............................... CAGTTTCCCCCCGCCGTTGGACGCGGGCGAGGGTC 53971 31 100.0 34 ............................... GGTGATCATCCTCGACGAGTGCTACACCGTTTTC 53906 31 100.0 34 ............................... TCCGTTGGGCCAGGTAGTGATGCACAGCCAGAGT 53841 31 100.0 35 ............................... GTGATGTGTCTATCGCCCCAGCCTGGATGATTCTC 53775 31 100.0 34 ............................... TCGATGCCGGCGGCCTGGCAAATCTCAGTCGCCC 53710 31 100.0 35 ............................... ACGACAGAAGCAATCACAGTTACTGCAATACTGAA 53644 31 100.0 35 ............................... CTGGCCAACCTGGTGGTGCTGGTCTTCACTTCCAG 53578 31 100.0 35 ............................... TCGGTATAGCGGTGCTTGAGGTAAAGCAGGCAAAG 53512 31 100.0 36 ............................... CGTTACCAGCGCAGCGCCATCCTGATCGACGAAACG 53445 31 100.0 34 ............................... TCCAAGTCGGGATGGTCCGCGGCGCCGGCGCGGC C [53433] 53379 31 100.0 36 ............................... ATGGCTCAGTCTCGCTGGCGGGTGGCCGGTGTGGCC 53312 31 100.0 35 ............................... ATCACGTACTAGCAGCCCGAGCATCCCCAATGAGG 53246 31 100.0 35 ............................... ATATGCCCGGTAGCGGCCGTCTTCTCCCATACCCA 53180 31 100.0 33 ............................... CCGTACTACGTCACCGGCAACTTCGAGGGTGGT 53116 31 100.0 35 ............................... ACCCATGCCATGTCGTCCCGGCGCCACTCGACATC 53050 31 87.1 0 ......CG.......C.........C..... | G [53023] ========== ====== ====== ====== =============================== ===================================== ================== 66 31 99.8 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTACAAGAAAAACACTAACCTCTTCCGCTCACTACAGGTCCGCGGCGGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : TGGCCTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAATGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCACGGTCCCGGCCGGCTGACCGTTCACGGTGACCTCGGCCTTGTACTTGCCCGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACATTGGTGGTGGTGGAGGAACCCTCGGTTTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //