Array 1 41711-42645 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMU02000053.1 Leptospira santarosai serovar Arenal str. MAVJ 401 ctg7180000007758, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41711 29 100.0 32 ............................. CTCCCAGAGGAGCTATTCCGAAAAGAGACTCT 41772 29 100.0 32 ............................. GAAGATGGTGGTAATCAATGGCTCGGAAGCGT 41833 29 100.0 32 ............................. GGCCTGGTCGCGATGGGACTCGCTGCGGGTTT 41894 29 100.0 31 ............................. ATAAGTGTTTGCAGCTTTCTGAATTTTTTTC 41954 29 100.0 32 ............................. GCAACGCCTGCCTTGCTCGATATGAATTCGTA 42015 29 100.0 32 ............................. GGCATGGATTATCACACTCTGTCATCAAATCT 42076 29 100.0 32 ............................. TCATCTGCTTCCTTGACTGTGACGAGGCCGAA 42137 29 100.0 32 ............................. ATGAGACGCGCATTGTTAAAGCACTTTGAACA 42198 29 100.0 32 ............................. AAATACTCTCAAAGCTCAAAACCATTCTCGTA 42259 29 100.0 33 ............................. TAATCCAACCCAGGTGTGGTTCGGACTTCCTCG 42321 29 100.0 33 ............................. GAAGTTCTGCAATTATCAATGCAACGAATACTA 42383 29 100.0 32 ............................. AAGCCATCAGATAGACATATCCCTCGTAACAG 42444 29 100.0 22 ............................. ACTCACAAAGACTCACAAAGAC Deletion [42495] 42495 29 100.0 32 ............................. GGAATTGAGAAGACGGATGCGATCAATTCGAT 42556 29 100.0 32 ............................. CTCTCCACCACGGAGAGAAAATTTGAATAGGC 42617 29 75.9 0 .....................GCATTT.A | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.5 31 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : AACGTTTGGAGAGATGAGAATCGTAGGCTGCGTAGAGAAAACGTTGAAACACTTTCCGGGACAAAGTTTCTCTGGATTACAAACCAAGAAAACTATTCTGAAAAACAAAAAGATACTTTCAATTCTCTTAAAGTAGATTTATATAAAGTTGGCAGGGGATGGCAGATCAAAGAGGCCTTTAAGAAATTTTGGTTTTTCAGTTATGAAGGTAACGCGGAAAGGTTTTTCAAACGTTGGTATTTTTGGGCTACTCATTCTAAACTTAAACCGATCATCAAGGTGGCCAAAATGCTTAAGAGAAATCTTAAATACATCCTTACTTATTTCTCTCATCGTATTACAAACGCCGGATCGGAAAGTATGAATTCAAGAATTCAAAAAATTAAATCGAATGCAAGAGGCTTTAGAAACTTCCAATTCTTTCGTATCTCTATTCTCTTTCATTTAGGCGGTTTGAACCTTTACCCATGAAATTACCGGAAGGGCCACAAGTTTTTAGC # Right flank : ATTGCCAAGGAGTTTTTGAAAAATGAACTATCAAAACGTTTCAGAATAACGAAATGAAAATCTTAGAATAAGACGGTATAAGGAAAACGAGATATCCAAATCCTATTCTAAAATTTCCGATGACATCGGAAGCGATTCTGAATTTTTAACTACCGGCAAAAGCATTTTCTACAAAAATTCTCTTTTTACCGATTTTTGTATTTTTTCTTTCGCGCAACGGTAAGTTCTCTTTTTTGTTTCATAATATTCTTTTTCTTTGATATATTTTCAAATCCAGAGCCGAGAATGTATGCCACATATTTCGATATTGAAAAGATAGCCTCTCTATCCTCGGCAATTTTGAAACGTGCGCCTTACCCGATCTTATATCTGATAAAAATAATAAATTAAAAACTTATAAAATCATTTCCATTGCAAATACGGAACCCGAGATCACATCTCTCAGAAAAATCCCTTTCTCAAGTTGATTCCGTATTCCAAATACGCTTTGAGGCAACAAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 29266-30814 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMU02000009.1 Leptospira santarosai serovar Arenal str. MAVJ 401 ctg7180000007759, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29266 29 100.0 32 ............................. TCAGTTCTACCGAATTTGAATCAACTTCTCGT 29327 29 100.0 32 ............................. ATCGCTTCCGTATCACGCGGACCCGAAGGGAC 29388 29 100.0 32 ............................. TTATGGCTACAATCCGTTTTGGTTATTGTTCG 29449 29 100.0 32 ............................. AGCCATGTCCGAAAGGATTAGACTGATTGTCA 29510 29 100.0 32 ............................. GGTTCTAATGTTGTGCCTATCTAATCACCTGG 29571 29 100.0 32 ............................. GAAGACGATGACGAAGTCGACGCAATGAGGTA 29632 29 100.0 32 ............................. AGGTTAAAACGCCAGTCGCAGTAACATTCGAG 29693 29 100.0 32 ............................. TTGGCTGCTACGATTCCGTTTTCAAAATCACA 29754 29 100.0 32 ............................. AAACCCTGCGCCACTGCTGCTACGAATCTGCA 29815 29 100.0 32 ............................. AAGTTCGTTATCACACAGATCAGAAGAACCTT 29876 29 100.0 32 ............................. TAATCGGCTGGAGTGTGCTTGTACCGGTAGAA 29937 29 100.0 32 ............................. GCCACGTAAAATTTAAAGTTATTCGCGCACGA 29998 29 100.0 32 ............................. GAATATCTGGAAATTATTAAACTCTTTGAGTC 30059 29 100.0 32 ............................. GCTAATTTCTCCCGATAATCCGCCACGTCGTT 30120 29 100.0 31 ............................. GCCGTATCGGTCCTCGTAAGAGACGCAGCAA 30180 29 100.0 32 ............................. ACAGAACGACTCTCCTTGATACCGTCTATGAG 30241 29 100.0 32 ............................. AATCCGTCGTTACCGTCAGTTTCGTGGGATCG 30302 29 100.0 32 ............................. CACTCAAGACCCATAAAGAAAATTCGCTTAAG 30363 29 100.0 32 ............................. GGAACTATTCCACCGAACACACTGATCACCGA 30424 29 100.0 31 ............................. AATGGGTTCAATTCCTCGGACTTAACTCGCA 30484 29 100.0 31 ............................. AATGGGTTCAATTCCTCGGACTTAACTCGCA 30544 29 100.0 32 ............................. TTTTCGAGATGTCAGTTTCCAATCCTCTTGAA 30605 29 100.0 32 ............................. TGTGTTCGAATTTCTATTCCTAAACGTCCGAG 30666 29 96.6 31 ............C................ CCCATGCGTCGGGAAATAAAACTCTGCGAAT 30726 29 100.0 31 ............................. CGGCTATCGCACTCGGAAAACTTTATCAGGA 30786 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.9 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : ATAGTAAATTACTTAAGAGGATTATTCCGGATATCAAGGAGTTGATTTATGGTGGTTCTGATTTTGGAGAGAGCGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAACCGGGCGTCTTTGTGGCGTCCATCAACGCCAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGAACGCGATCATGTTGTTTTCGAACAACTCGGAACAGGGTTACGGCATCCGTTCCCACGGCGATCCTTCCCGAGAAATCATGGACTTTGACGGTTTGCTTTTAATGTCCAAACCCGATTCCAAACGCGACCGCTGGGACGATTCCGATCTTTCCAAAAGCTCCGAAGTCGACGGTTCTCCGTTTCCGGATCTCAGTAGTTTTTTCAACGAAAAGGCGAACTCCCTTCTTTTAGAAACAGACCTTTCTAATGAACCTTAGAGGCAGATATACTTCTTAAGATTCCTATACAAGTTTTTAGC # Right flank : GGCTGCGCACATCCGAATGAACCGCTTCCCACCATACGGCGCCCTAAAAAAGATATAAAATGAAGAACGTGAGTTCGGCCTAAGAAAATCGGAGCCTGTCCCGAATGTGGGAACTCTTACAGTTTCAGTAAAGCTATCGAATGATAGGAACCGATTTCTTTTAAGGTTTTGAGACTCGCTCCAAGCATCATGAATTCTAAGCTACATTCTTTTGAGTGCGTTTTTAAGTCTGATTTCAAATAAAAACATTTTCCATTCATCCAGTTATTACTATTATTATAACATGGACAACTCATCGGTGAAAAAGACGACCATTCGGGCAATAGGCAACTCCGCCGGGGCTACCATTCCTAAAGCTCTATTAGAAAAGTATAATTTTCATGAAGGCGACACCGTATTTCTCTTAGAAACCGAATCGGGTATCCTTTTATCTCCCTATGATCCCGACTTTGAAAAAGCTATGGATATTTACCAAAAAGGTTCTAAAAAATATCGGAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //