Array 1 101066-101471 **** Predicted by CRISPRDetect 2.4 *** >NZ_DF978435.1 Nostoc cycadae WK-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================== ================== 101066 38 100.0 34 ...................................... ATTCGGTTGTTCTGTGTGGTAGATGGTAATAAAG 101138 38 100.0 40 ...................................... GCAATCAGTACGCCCACCGCTGGAAGAATTAAATTTTGTG 101216 38 100.0 33 ...................................... AGGGGGGAAGTCTTGAGTCATGTCTCGCACACA 101287 38 100.0 35 ...................................... TAGTTTGAGCAGAAGCACCCAAAGCAGTAGCGCCC 101360 38 100.0 36 ...................................... TTTTTTCAAGCAAGATTTTACCTCTTAATTGACTGT 101434 38 97.4 0 .....................................A | ========== ====== ====== ====== ====================================== ======================================== ================== 6 38 99.6 36 TATTGAATCCCTAATAGGGATTAGTTGAAATTGCAATG # Left flank : GCATAATAAATACTTAGAACTCCGAGACTTGGCAAAAGTACAGCGTCAACGAGAGTTACCCACACGCATTATCCAAGCATTTCAGACATTGATTCAAAAGCGAGTATTTGCTCCAGTACTCTCTTCTAATCGTACTTTTCAACCTCCATCATTTTTACGCTTGCCATTTTTGCGCGACTTCCCCGCCAGATTGATTGCTTTGGGGGTGTTTCCAGTTCATGTGAAATATTCAATCAACTCCTAATCCTCTCTGCGCCTCTGCGTCTCTGCGTGAGATATATCATCCCGCAATATACAAGGTTGGGTGGAACGAAGTGCAACCCAACAATATCAAAATATTTGAATTTTGGAAAAGAAGAATTTTAAGTCTCACGCAAAGGCGCAAAGGCGCAAAGAATTAAATCATAATAGAGTTTAGTGCAAGCTAAAACTCTTTTTTTACAACGAACCACAAAGGGCGCAAAGAACACAAAGAGAATAACCAATGCTTCACTGAATTG # Right flank : AGCGGGAGCCGGAAAAGCGCTCTGTATTTGGTTTTCAAGGTTCGATTTCGCGGATGGGCTAATTATAACATCAGATAATGTCAATTTATTTATATGAAATCTCTGAAACCCATATAAAATAATGTGCGCGGACGATTTTAATTTATTTTTTCTGCAAAACCCTGCACTGAGAGGAATACAGCCGTTTTTGCGGAATGCTAATTTTCTACACCTACCCATCCGCGCTTGTGGTCAAAATAAACAACAAATTAACTAATCAAATTCTCCAAAGCTGTCTGCAAATCTTGTGTCAAGGTACTTGCTGCTTGTCTGGCTGCGTGACGGTTATTTTGCGCTTTTTCCCAGCGTTCGGTGACAGAAATTGGTTCACCTACAGTAATTTGCACTTGTCGCAAACCTAAGCTTGGTCTTCCTGGTAATGTTGAGTCTTGAATTCGAGTTAGCATATCATACATAAGTAAGGCTGTCTCGGCAAACCGTTCGGATGTAGGTTGTTCTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTGAATCCCTAATAGGGATTAGTTGAAATTGCAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 47368-47988 **** Predicted by CRISPRDetect 2.4 *** >NZ_DF978442.1 Nostoc cycadae WK-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 47368 37 100.0 39 ..................................... ATTTCTATTGCTAATTCTCTTTTAGGAGGTTGTGATTAT 47444 37 100.0 35 ..................................... TCTTTGACTGCTCCTTTGTACGCTCTTTTGATGGC 47516 37 100.0 35 ..................................... GCAATCAACGCATTATAAGCACTAATATTACTAGG 47588 37 100.0 35 ..................................... CGCTTTGGAGATTATTTATCTAATAGTAGAATTAC 47660 37 100.0 38 ..................................... CGCAATTACTGTCGTCAATACAAACTAAATTGGTTCGC 47735 37 100.0 33 ..................................... AGATAATTAATGAGGCGCAGGCACTAGCCCCTG 47805 37 100.0 38 ..................................... CTTTTGGAACTTTGATAATAGGCTGAGATCCCAAGTAA 47880 37 100.0 35 ..................................... GGTAATTACCAAGAATCGTATTCAAAAATGATGGA 47952 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 100.0 36 GTTTAAATTTCACCTAATCCCTATTAGGGATTGAAAC # Left flank : CGTTATCAAAAAGCCGTCGCCGCCACAACAGCCGCCGATGTGCAACGGGTAGCCAAGCAATACCTCAAACCCGAAAACTTAGTAACTCTAGTTGTCGGAAATCAAACCACTATTAAACCGCCATTAACAGGTTTAGCCAAACAAGTCACACCCATAGACGTAACCATTCCCGGTTCGCCCTCACAAACGAAAAATTAATCGCAATATAATACCTAGATACCCGACTTTTCCAACAATTCGGGTATCTGACAGCAGGAAATAAAATTCCTCAAAATGCGCGGATGGGTAGGTGTACAAAATTTCTCTTGAAAGACAATAGCTGGATTCCTTTCACTGCAAGCTTTTGCAGAAAAAATAAATAAAAATCATCCGCACTACCTATCCAGTCTATGTTTCAGCTATTTTGCTTAAATCAACTGACATTTACTCATGTTAAAATCAACCCATCCGCGAAATCAAACCTTGAAAACTAAATACAGAACGCCTTTCAGGCTCCCGCA # Right flank : CACATTGCTATCACGGGTACATCCCAGTTTTTATTTAACAATTAGAGAGAATAAATATCATTGCCAGGAGGAACAACGTAGGCGAAACCTTCTCGTATGGTAGCGATCGCATATTTTTGTTCCTAAGTTCGAGACTTTGCGATTGCTTCACTTCACTTCGTTACATACCCTTTGGGAAGGCTAACGCCTACGCAATGAAATTCAAAAAAGTGGGATGATCTCAATTCCAAAACTCTGGACTTAAAAACTTACATTACGATAAAAATTTTGCTTTTATAGACGAAACTCCTTTAATTGTGTCTAATAAATGAATTAAAAAACCTTGAATTTTTTGAATGTGTATACAAAATATAAGAGAGACATTTTAAATGTTGTGTAGCTAGGTTTTAGTTATAGCTGCACTAATTAGGATCACCGTATTTGCGGAGGTAAAATCAATGGCAAGAATAACAATCTCAGACCTTTATCTTAATAATGATGAACAGCATATTACTGAACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTTCACCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 164386-163194 **** Predicted by CRISPRDetect 2.4 *** >NZ_DF978424.1 Nostoc cycadae WK-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 164385 37 100.0 37 ..................................... TCATTTGCAATTTTCAACCCTAGCTCTAACATATAAA 164311 37 100.0 37 ..................................... CTTGCAATTATGGCTTTTACTGCTATAATTGGAAATG 164237 37 100.0 34 ..................................... AGTAAAAGCGCCACCTTTTTGACCAACGCTTGAG 164166 37 100.0 34 ..................................... GCCCTTCAACAAGTGCAATAGTATATTTAACACT 164095 37 100.0 35 ..................................... GGTGATGGAGTTGGTGATTTATAAGGATTGGGAAT 164023 37 100.0 34 ..................................... TGTATGCCCGTTTTGCTTTTCATTATTCGCTTGA 163952 37 100.0 34 ..................................... AGCTCAACCAAAGACTACTCAAATAATGCCTGCT 163881 37 100.0 31 ..................................... GTAGGCGCGGATGGTAGGAGCGATCGCCCAA 163813 37 100.0 35 ..................................... CCTTTAGGAAGGAACCACACTTGTACGCCTGGTGG 163741 37 100.0 37 ..................................... GCAGCACAATTTGGCTTAGAATTGCAGTGGATCGAGA 163667 37 100.0 33 ..................................... GAAAATGGGAACAATTTAGCTGCAACAGATTAA 163597 37 100.0 39 ..................................... AGACATATTACACACTGCAAATAATTAATCTATCCTAAT 163521 37 100.0 40 ..................................... AAGAGCAGCTTTACTCAAAGGAACGCGAACAGTTTTGGTA 163444 37 100.0 33 ..................................... CTCTTCCGGGAAGCGATTTTTGAGTCGTGCGAT 163374 37 100.0 37 ..................................... GTAAAGATGGGTATAGCCCCCTCTTTATAAAAGGCGA 163300 37 100.0 33 ..................................... CATATATACGCACCTGAAGGGCAGTACTGGAGT 163230 37 94.6 0 .............................T......T | ========== ====== ====== ====== ===================================== ======================================== ================== 17 37 99.7 35 ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Left flank : AAACACCCGCAATCAATCTCCAGAACACCAACTTCCTCACCGCGAACCAATTAAGCACATACTGATAGGCTCTACTCAAGTCGTTACTAGTACCATTCATCATTTACACATCGTTGGTTACGCCAGCGTCGGCGACTGGAGTCCACTGCTACCAACCGCCAACTCAGATGAAGTCATGAGTATTTTAATCCGCCAAATCTTGATGTAATATCTAGATCCCCGACTTTTTCAAAAAGTTGGGGATCTGAACAGCACAACAAAAAATCTCTCCAAATGCGCGAATGGGTAGGTGTAGAAAATCGCCTTTAAGCAACAATCGCTGAATTCCTTAGAGTACAAGCTTTTTCCAGAAAATTTCATTAAAATCATCCGCGCACCTTACGCAGTCTATATTTCAGATATTTTCGTTCAATCAACTGACATTTGCTTGTGCTAAAATCATCCCATCCGCGAAATCGAACCTTGAAAACTAAATATAGTAAGCTTTTCTGGCTCCCGCG # Right flank : CTCAGATATTCAATTTAACCGAGTGCGATCGCATCTCAACTAGATTGGGTAAAGCACCCAACCTAATATTACTAAGAAATAGACATAACCCAATCTCTTAAAAGTTGATTGACTTGCTCTGGAATTTCATCATGGGGACAATGACCTGCATTGAGAAAATATTCGGTCAGTTGAGGATAATATTGCTGGAATTTTTGGGAACGTTCTTTTGCCTTCATCCAAGGATCAGCTTCGCCCCATAATAATAATAAAGGGCAGGTTAATCGCTGCAATAGCACATCAACTTTTTCTCCTTGAGGGCTGCTAAAAACAGAAACAAAAACATCAAAAGCGCCAGTATCAAAAGCAGGGCGATAAATGTCTTCTACTAATTGGTCTGTAATTGCAGTTTTATCTAAATAAACTTTTTCTAAAGTGCGGCGAATTACCCAACGTTGTCGCACATATTGAAATATTAAAAATCGGGAGAAAGATTGTTTCAAAACCCACTTAACACCATT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //