Array 1 157394-159283 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGUB01000003.1 Melaminivora alkalimesophila strain DSM 26006 Ga0244563_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 157394 28 100.0 32 ............................ GAGAACTGGAAGGACGTGCTGACTGCTGCACT 157454 28 100.0 32 ............................ ACCAAGACCGGCCGTGTTGCGCGCCTGATCGA 157514 28 100.0 32 ............................ GACCCTTGCTGCAGCGGGTGCATGCACCGTGG 157574 28 100.0 32 ............................ GAACGTGTGCTGCAGGTGGAGCGCCTGGTGGG 157634 28 100.0 32 ............................ GCTCGCGCACGGCAGCCCCGCGCAGCCTGGGC 157694 28 100.0 32 ............................ AGGCCTCGCGCATCAGTCGCGCATCAGCTGCG 157754 28 100.0 32 ............................ GCATCCAGGCGGTCAGCCGCAGCGCCTCTGGT 157814 28 100.0 32 ............................ AAATGGATCGGCCTCGCGGGCCATGGCGATGA 157874 28 100.0 32 ............................ ATGCAGGCTATGGCTGGGCTCCTGGGCCTGTC 157934 28 100.0 32 ............................ ACAGCCCCTGCCACCGTGCCGATCATCTTGTT 157994 28 100.0 32 ............................ TACAGCCCGCCGTGGCAGCTGGCGCGGGTGCC 158054 28 100.0 32 ............................ TGGTGGCCTTCTCGTTGGGCTGCAGTCCCAAC 158114 28 100.0 32 ............................ GATTAGGCGACACGCCATGGGCGCTCACTGCG 158174 28 100.0 33 ............................ CAAGGAGGCGAGCCATGGCTGACCGCCTCGTTC 158235 28 100.0 32 ............................ TGGACGCCGCCCGCGCAGCCAAGGAAGGAGAG 158295 28 100.0 32 ............................ AGCTTGCCAGGCCCTTTGCTTTCGTCGGCCCC 158355 28 100.0 32 ............................ TGATTGCCCCGGCTGGCCGGCGCAGGGGCACG 158415 28 100.0 32 ............................ TTGCTCAGCAGGCGCTGCCTGGCCCGCTTGGA 158475 28 100.0 32 ............................ ATCGTCGGGGCGCGAAGGCCAAACAGCGTCAA 158535 28 100.0 32 ............................ CATGACGCGCTTGTATTTCTTCAGGTAGTCCA 158595 28 100.0 32 ............................ AGCCCGGCTCGCATGGGCCGGGCGCCGAAATC 158655 28 100.0 32 ............................ ATCCGTCGCGCTCAGCCGCCGGAGGATGAAAT 158715 28 100.0 32 ............................ AGCCCGCCGGTGCACAACAACTTGCGCCGCAG 158775 28 100.0 32 ............................ CATCCACCGACGCCGAAATCGCCCTGACCGAG 158835 28 100.0 32 ............................ GAGCTGATCATCCTGGCGCCCACGTTGGAGGT 158895 28 100.0 32 ............................ CACGAGGGCTACCGGGGCGAGGCGTACATCCC 158955 28 100.0 32 ............................ TTGAGCAGGACGGGCTGGGCGGCGAGTGCTTC 159015 28 100.0 32 ............................ AAGATCCAGGCCTCGCAGCTCATGGCGCGCAA 159075 28 100.0 32 ............................ TTGATAGGGTGCCGCGCCCACGGCTCACGACC 159135 28 100.0 32 ............................ TCCATCGCCTGCCTGCCAGCGTCCAGGTAGGG 159195 28 100.0 32 ............................ ATTCCTGCGCCCAGGCTTCCTCATGCTCCTCC 159255 28 100.0 0 ............................ | G [159281] ========== ====== ====== ====== ============================ ================================= ================== 32 28 100.0 32 GTTCCCTGCCGCGTAGGCAGCTCAGAAA # Left flank : CAGGCGTTGGCAGCCCTGATGGAGCAGAAATGGCTCAAGGGCATGCACGATCACGTGCAACTCACTCCCCTGGCGGCCGCCCCATCGGACGCCCCGCACCGCTTGGTGCTGCGCCGCCAGTTCAAGACCAGTGCGGAGCGCCTGCGTCGACGGCGCATGCAGCGCAAGGGGGAAACCGCCGAGCAGGCCGCAGCCAGCATTCCCGACAGTGTGGAGCGTCGCCCTGATCTTCCCTTTGTGCAACTGCGCAGCAGGAGCACAGGTCACCCGTTTTGCCTGTTCGTGGCTCACGGCCCCGTCTTCGAAAAACCCCTGACAGGACGCTTCAACGCCTACGGGCTGGGACCGTTGGCGAGCGTGCCCTGGTTTTGACCCTTTTTTTGGGCCCACGAAAAGTTTCTTGCAAATCAACGGGTTGCGCAGTCTCCAGGAAATTCACCATTCGGCCTGAAAAAGCATTTTGTTCTTTAAAAACAGAGACTTAACTGTATTACAGTGCA # Right flank : ACCAGCCTCGCCGTGGTGGGAATATCCTCCAGTTCTTGGCGAGCGTGGAGAGTCGGCCGCTGCTATGCGAGCACATCGTGCGACTGAAGCGACTGGTCCCACCAAGTCACCCTGGGCCAGGGCCCTCAACCCTGCGCGCTGCTGCTCGTCCGCAAGCGTGCGCCCTGCGGTGCATCGGGTTGGTAGTCGAGCACACGGAATTCGCCCTGCGCCAGCGCGGGCTGGCGGCGCAGCATTTCCAGCGATGCGCCCATGTCGGCCAGGCCTGCCGCCCAGTGTTCGGTCATCGACAGGCGCGAGAACTCATAGCCCTTGTTTGCGCTCTCGTAGGGCTTGCCCCGGTGGATCACGTGCACCAGGGCGACCGAAGGGTCCTCGGTCTGCGCCAGCAGGCGGCGCACCTCGGCGCTGCGCTGCTGCTCGGCCGGCAGCAGCGCCGCCATGTCGCGCAGGCGCTGGTGCAGCGCCTGGCGCTCCCGCACCCAGCCGCTCACGGCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 115688-115540 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGUB01000002.1 Melaminivora alkalimesophila strain DSM 26006 Ga0244563_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 115687 28 100.0 32 ............................ AGATAAGCAATCCGCAGGGCCTGCGGATTGGG 115627 28 100.0 32 ............................ TTCGGAGCCTCCGCACTGAGTGCGGACCCTGC 115567 28 71.4 0 C...............G....CTTA.CG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 90.5 32 ACGCTCCACGCGCGCGCGGGGGGACCGA # Left flank : TTCAAGAGCGCCCAGGGCAGGAACGAGCTGGTGCACACGCTCAACGGCTCGGGCCTGGCGGTGGGCCGGGCGCTGGTGGCGGTGCTGGAGAACTACCAGAACGAGGACGGCAGCATCACCGTGCCCGAGGCGCTGCGGCCCTACCTGGGCGGCCTGGAGCGCCTGGGGGCGCAGGGCGGGGCGGTGGCCTCGGCCGGCTGAAGGGCCGCACCGCGGTGGCCGTGCACCCCGGCGGCCTGGCTTTTTGCTGCTAGAATTGCTGGCTTCGACACACAGGAGAGGTGGCAGAGTGGTCGAATGTACCTGACTCGAAATCAGGCGTACGTGCAAGCGTACCGTGGGTTCGAATCCCACCCTCTCCGCCAGGATTGAAGCCTAAGTGATTGATTCACTTAGGCTTTTTTCTTTGCCATCCAGCTCTACCCATGTTTCTACCCATGTCGCAAACGTTGGTAGCGGTGGGATCAGGCGCTTTCGTCGCGGTCTATGTTGGGCATAGG # Right flank : GGCAAATCCCGGTTTGGCCGGGCGGGGGGGGGAAACTCTGCGGTTCTGTAGAGTTTTACGATGGTCTCGCAAAAGGCGCAGAACTGCGCTCATCGGCGGCGCCATCGCGAAACGGAAATAGACGAATCGGCGCGTCCTGTGGTAGCCGCCAAAAAGCGATAGCAGGGAAGCAATGTCTGACAATGGTTTGCGCGCGAAGGTGCCGGTTGCTGCCACAGATTCGAGCTGTACGGGTATCAGTATTTCGCGATGGCTCACGGCCAGAAAATCGCAGCTCAGGCGCGATTACCCGGCACCAGGGCAAGGGGGTGCGCGAAGTGATGCACCCTTGCCGGCGCAAAAAAGCCCGCGCGCGGCGGGCCTGGGGTGATGGCGATGGCGGATCAGGTGCTACGCCACACCATCACAGCGGGCGCCAGCTCAGCGCAGCGGCGCTCCAACGCCTCCGGTGTCTCATCGGTCAGGCGGTCAATCTGGGGGCCGGCGGGGTAGGCGACAAA # Questionable array : NO Score: 4.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACGCTCCACGCGCGCGCGGGGGGACCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [1,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //