Array 1 498-1546 **** Predicted by CRISPRDetect 2.4 *** >NZ_VATL01000016.1 Escherichia sp. E1130 sequence16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 498 28 100.0 32 ............................ ACCAGTGCGCACCAGTGGTGGCCTTTGTCCTT 558 28 100.0 32 ............................ ATTCCCTGCGCTATCTCGTTACGCCCGTCATA 618 28 100.0 32 ............................ GTTATAGAGATGCGGATCACAGTAACGAGCAC 678 28 100.0 32 ............................ TCAATAGCCGCGAGCACGCGCTCGGCATATGT 738 28 100.0 32 ............................ ATTCACTGGGTAAGCAGGGAAGAACTTGCCGA 798 28 100.0 32 ............................ TGGTCGCTAATGCAATAACAGCCTGTAGTTCT 858 28 100.0 32 ............................ AATACTGCCGACAAAAACACAAAACTATTCAC 918 28 100.0 32 ............................ AGTTGAGAGACGTTGCCGCGCTCGCGGCTACC 978 28 100.0 32 ............................ AAATTGTCGCGCGAACAGGCGATATTCCGTAT 1038 28 100.0 32 ............................ GACGCGCGGCGCTCGATAACCGCCTCAATAGC 1098 28 100.0 32 ............................ ACCTGGCGCTACTGTAGAAAAATAATAATAAA 1158 28 100.0 32 ............................ TGCCGAATGGGCTGAACGCGGAGTTCTGCTCG 1218 28 100.0 33 ............................ AAATACCTGGAGGGCAAATAATGTCGTTTCCAA 1279 28 100.0 32 ............................ AGTACCGCCATAAGATCACGTAATTAGTTACG 1339 28 100.0 32 ............................ CATCGGGGCGCGCACAATCACCGGGCCGCTGC 1399 28 100.0 32 ............................ GAGATACGCTCCGCTAGCAGTGACAACGTAAA 1459 28 100.0 32 ............................ TAACTACTGGCTGGAATTGCAGCAAACCAAAG 1519 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGCTATTCAGGACGGGTCACATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTCAGAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATGGATTGATTCGTTTGGTTACGCAATGAACATACTGCTCGCGCCCGGAGATTTTGACCGTATGTGTTCTGGTCAATTGTTTATCAAAATCTATGCATAAAATATGAGATTGAAGAAGTACCAAATAGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTGCTTTTTTGATGTCTGGAAAAAGGGTTTAAATCTGCGACTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCAG # Right flank : ACACAACACTCCATCCTCCAATATTTATTCCCCGTAACTCCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAGCAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAATTCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACTATAAGCGCAACATATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 546602-547351 **** Predicted by CRISPRDetect 2.4 *** >NZ_VATL01000012.1 Escherichia sp. E1130 sequence12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 546602 28 100.0 32 ............................ GACTTGAATCACTGCGCATGGCTTGAGGGAAT 546662 28 100.0 32 ............................ GGATCCGATTCGGTGTCCGGGAGGTTATCACC 546722 28 100.0 32 ............................ GGGTGGAGTGTTAATGTCTGCATCCCCTCTTG 546782 28 100.0 32 ............................ GAACTGACAGGATACAGCCGAACTAGCGTTGC 546842 28 100.0 32 ............................ GTTCCTCTGCGTTTTTGCGCGTACCTGCCGGG 546902 28 100.0 32 ............................ AAATGGTGCCAGCAGCGGCAACGGACGAGCCT 546962 28 100.0 32 ............................ GCCCCGAATAATCAGCAGATTGAGCATCTCTA 547022 28 100.0 32 ............................ TGAGCGACATAGAGCCAGGGACAACAGTCAGG 547082 28 100.0 32 ............................ TTCTTTGTTTTCGCCTGGTTCTGCCATGTGTT 547142 28 100.0 32 ............................ ATCACTCAGAACAAGCATGATCTTTCTGTCCT 547202 28 100.0 32 ............................ TTGTTTGCAAGTGGTGCGGCAAATCATTTCAC 547262 28 100.0 33 ............................ ACGGGAAATTAGTTTTTCAGAACGAGCCTTCTT 547323 28 92.9 0 ....................T...C... | C [547346] ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTTATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCGATGGGCGCGCGTCCGATGGCACGTGTGATTCAGGATAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGTGGCCAGGTGACAGTCGCGCTGGGTAAAGATAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCATAAACCGGAAGCCGCGCATTAATCAGATTGTTAAGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATAGGGTGGAGGAAGTTCAGACCCTTTTTTTGGTGATGATGGTAAGTTGTTGATAATTAACGCTGCTGAAAGGTAAGAATAAAAAAGGGTTGTAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCCTCAACGTGCAATAACAATTGTGATAATTGCGATAGAAATCAATTTCTCGCACAGAAATCAATGCTGTACTAATCCTAGCTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCCAATTACCTTACTCCATCTGACCTCAAAACCATTCTCCACTCTAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAATATATTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACTCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGGACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGTTCAGTCCGCAAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //