Array 1 116-948 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABHJ01000201.1 Hydrogenivirga sp. 128-5-R1-1 1102927037967, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 116 29 100.0 38 ............................. TTTGAATTTTTGATTTACTGTCGGCAGTTTTATCTTTA 183 29 100.0 37 ............................. TTTGTTATTATCTGTTTTAAATATTTTACAACCTTTT 249 29 100.0 41 ............................. CTAAAATTTACATTAAAATCACAATAATACTTGCAACAATC 319 29 100.0 40 ............................. TTTTCTCTAATACTATTTTTGCTTCTTCATCAGAAACTTC 388 29 100.0 37 ............................. TTGTTTCAAAATGAAGTATGCTTAAAAAGTCATCAGT 454 29 100.0 39 ............................. TTAAAGAAATGCTTAGAGAAGCAGTTAAATCTAAAAAAG 522 29 100.0 36 ............................. ATTCTTCATTCGTCTTTATTTAAATATTTCTTAGAA 587 29 100.0 38 ............................. GATTATTCGTTAAAGTTAAATCAACCTCTTTTATAAGC 654 29 100.0 37 ............................. TCTCTCTCAATGTTGACATTTGTCTTACCTCCTCAAC 720 29 100.0 37 ............................. TCAGACTCATCAACTTCAGCAATCTCGAAAATAGGAG 786 29 100.0 38 ............................. ATATAAAAGGTGCTGTCATATATTTCTACATCATTAAT 853 29 96.6 38 ............................G AATTCTGGTTCTGTGTATATCCAAAAGATTTCAAAGTA 920 29 93.1 0 .....................CA...... | ========== ====== ====== ====== ============================= ========================================= ================== 13 29 99.2 38 GTTTTATCTGAACTATATGGGGTAAAAAT # Left flank : GGAGGTTTAATGCAAACTACCTCCACCAGAGAGGATTTTGAAGATTTTTTTAATCTTTTTTAATGCTTGAAAATACTTGCCAATGTGAATTTTTTTTATTATATTTAATTAATGGG # Right flank : TCCCTAAATATGCTCAAATCCTTCTTCTTTTAAATGTATTTTTTTGTTATTCTCAATTAGATAAATACCTTTTCCTTTTTCTACTTTTCCTATTTTGTAGCAATTTTTTATATGTTTTTCATTCTTGCTATCTACCGTAAAAGCAAGCTCATAATCTTCACCGCCATAAAGTATGTACTGATAAGGGTCTTTTTTGTATTTTCTGCAGAATTTTTCAAGAAGCGGGTGAACTGGTAGTTTATCTTTTTCTATAATTATTTTTACACTGCTCATTGTTGATACATGCCTTAAATCTCCAACAAGACCATCGCTTATATCTATACAGCTTTCTGCATATTTTTCAATTGTTTTCTGTAAATCTATTTTTGCTTTTGGTTTTACGTGTTTTTCTATTAACTCTTTTTCAAACTTTTCATATCTTTTCTTATCCATTAATAAAAGCTCAAGACCTGCTCTTGAAAGACCTGTTTCTCCAGAAATATATACACTTTGCCCTTCTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATATGGGGTAAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 21-458 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABHJ01000389.1 Hydrogenivirga sp. 128-5-R1-1 1102927037970, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 21 29 100.0 37 ............................. TATAAAAATATCGCTACCATGGCAGCGGACACGTAGG 87 29 100.0 39 ............................. CATCACTGAGATATAATACATCTGTGCAGGACTACCCCG 155 29 100.0 39 ............................. GCTACAACATCAAAATCTTGATTTTTATTTTCTATAAAC 223 29 100.0 42 ............................. ATTTTTGAGGTTAGTTCCCTGATTTTTGCACATTTTTTGTGC 294 29 100.0 39 ............................. TTCAAAGCCTGACAGCTTATAAGGGATATAAAGGACCTT 362 29 96.6 39 ............................G TTGACCTTTAATCTAACAGTTATTTGACACCCCATAATA 430 29 82.8 0 ........C......CG....A.G..... | ========== ====== ====== ====== ============================= ========================================== ================== 7 29 97.1 39 GTTTTATCTGAACTATATGGGGTATAAAT # Left flank : TTTGTCGCTGATTTACTTCAG # Right flank : TTTTGTGAGTGTGGATAGTCTACATCCTTAGGCTACGCTCTATTTTATCTGAACCAAGTGGACTGTTCCCACTCCCTCCCTATTGAATGCTAATTTTACACTTTTACTTTTATTTATTTTTATATTTCGTAAAATGTTTTACTATTTCATTAAACAGATTTTTTATAATCTCATTGTAGTCTGCGTCGTTATTTTCTACTTTATCCATGAGATTTTCAAGCTCCCTTGTAAATTTTTCATTTACAAACTTATAAAAGTCTTCTTTTTCTTTTATCAAATTTAAAACTATTCTTCCAAGTTTTGTAGGAAAAAGATAACCGTTTCTTTCAACTATATAACGCCTTTCAAGAAGTTTTTCTATTGTTATTGCATAGGTTGATGGTCTTCCAATTTCCTTTTCTTTCATATCTTGAATAACAGTTGCATAAGTATAATAAGGAACTTTTGGTCTTAAACTGAATTTTTTATTATCCACCTCATATTTACCTTCTGACAGCTTT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATATGGGGTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 1123-362 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABHJ01000069.1 Hydrogenivirga sp. 128-5-R1-1 1102927038356, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1122 29 100.0 37 ............................. AAATAAAAAATATCAAAAGTATGAACAAATTATAGAA 1056 29 100.0 37 ............................. TGAATTTGTAGAACTAGTTGAAGAAGATGGAACTCCT 990 29 100.0 37 ............................. TTTTTCTATTTGATTTAGGAAAAACTCTGCTGCTTTT 924 29 100.0 37 ............................. TACTTTGAAAAATTAAAATATTTTAGATTTTTACTTT 858 29 100.0 37 ............................. TCTGTGTACGATTTGTATTTTCTAGTCCACCAGTCCC 792 29 100.0 38 ............................. TTTGTTCAACAAGTGTCCAATATTATTAAAGAAAACAA 725 29 100.0 39 ............................. AGATTACAAACATATCTTTATATTCACAATGAGTTAGGA 657 29 100.0 34 ............................. CAAGTTTATTATAAAAAATGGCATTCTGTATTAA 594 29 100.0 40 ............................. TTATGATTTTCTAATATTCTAATGTTATTATGTACTGTGC 525 29 100.0 40 ............................. TTGATTTATAAGAATTAAAAACACTATTTGATTTTTTCAA 456 29 100.0 38 ............................. CAGGGTCAACTCTACAGCCTTGATTTTCCCTAATTTGA 389 28 75.9 0 ..........T.......AAA-..TT... | ========== ====== ====== ====== ============================= ======================================== ================== 12 29 98.0 38 GTTTTATCTGAACTATATGGGGTACAAAG # Left flank : AATATTTATTGATAATAAAAACAAGAAAAGACAAATTTGAAGAATTAGAAAAAAAAGTTAAAGAAAATCACCCTTATACTGTCCCAGAAATAATAGCAATACCTATAATAGTAGGCTCTGAAGATTACTTAAACTGGATAGATGAAACGCTGAATAGAAATTGACTAAAAAAATTTTTAAAATATCATTTGATTTTGTATAATAATTATGAGGCTATTTGGAAAAAGAATAAGGATACCCCATGTTTAGTATTTTAATGGAGAAGGGCTATTATTAATAACAGTTATCATTAAGTTTTGCATTTTTAATGAAAAATATATTTCTGTGTAAAATGGCTTTTTATGAGCTTCGGCGAGAATATAACAGAAAATATATTTGCATTAATGGAGGCTTAATGCAAACTACCTTCTCCAGAGAGGATTTTTAAAATTTTTTTAATCTTTTTTAGTGCTTGAAAATACTTGCCAACATGAATTTTTTTTATTACATTTAATTAACGG # Right flank : GTTTAAGTCATGAAATTTTATACAACCGCTTGACAATCACGAAGTATTAAGATATATTATTATTCACGTTTGTGATGTTCCGGAGTAGCTCAGCAGGCAGAGCAGGCGGCTGTTAACCGCCGGGTCGGGGGTTCGAATCCCTCCTCCGGAGCCATTTCTTACCTTATAAATCCCAGTCATATAATAATTTTGTTATAATTTAAAATAAAAAGACGAGGTTGAAATATGGACTTATCAAAAATTCCAGCAGGTAAAAACCCTCCTGAAGATATCTACGTAGTAATTGAAATTCCACAAGGAAGTTCTATTAAATACGAAGTTGACAAAGAAAGTGGTGCTGTATTTGTAGATAGATTTTTATT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATATGGGGTACAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 18982-19382 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABHJ01000012.1 Hydrogenivirga sp. 128-5-R1-1 1102927037972, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 18982 35 100.0 38 ................................... AGGCTTGCGATATCTCTTCCTTAACCACCTCCTTGAGT 19055 35 100.0 39 ................................... CCTCTAAAAGCTTTACGCCTTCGGGAAGTCTCCTATTGA 19129 35 100.0 37 ................................... TCTACCCTCACAAAGTAGCTCGTCCCCCCTCCTCCTG 19201 35 100.0 37 ................................... AGGAGCTGGTGGGAGTTATACCGGAGAACCAGCCAGA 19273 35 94.3 39 ...................GT.............. ATATAGTGCAGGTGTACCCTCATAGCATCACCTCCTTGT 19347 35 82.9 0 ....................T..G...T..AAA.. | T [19367] ========== ====== ====== ====== =================================== ======================================= ================== 6 35 96.2 38 CTTGAAATGCCCTTAAGAAACGAAGGGATTGCGAC # Left flank : GTAGAATACACTGAGCTGTATCCTGAAGCCATAGCGCGATAGGAGTCTTGATACCTTTACCCTTACGGGGGTCTCTGATATGTCGTAGGCGACCACGTACTTCATACTTTTCAAAAACGACCGTAAGGGTAAATTCCTGACGCTGGAAGCTGGAAGAGGTCGTACTTCTATCTCCTACTGTACCAACAATTTGGGACACTCTCTTGAAAAAGGTTCATAAAATCGTGTAAGTATTTGATACTATTGCAAAAATAACTTCGTATGACGGAGATCATATTAAAAATTTCGGGCTATGTGCTTAACTTATTGGCAGTTAATAGCGGGACGCAGGTGCCCGCCGGCTCCTTGACAACCGAATAGGGCTCAAAAAGGGCTCAGAGCTTAGAGCGACAAAGCCCAGAAGGAACTCTTTGGTAATTCTGAATTTTTGTGACACCATGTCTAATTGCGAACAATTCTCACTCTGGGCGCTTTGTCTCTCAATAATTTGAAATTTACCT # Right flank : CACGGAAAAGACAAGAGTGTTAAAGACCGGGTCAATCAACGTACAGGGATAGGGTAGGCACGCCGAACCTCTTCTGGAGCTCCCTCTTTACGAGCTCTCCAAAGACAGCCTTGTTATCCCTGAATTCCTTGAACTTCTCCTTTATCTCTCTCTTTTCTTCCTTGCTGAGCTGCTTCCATAGCTCCCTGAAGAGCTCGGTTTCAACCTTTTTCAGTATCTCCTGAGCCTCCTTTTCACTCTCGGGATCCTTCACGCTCAGGTTCACGAACTTCTTTACACCTCTCACCTTCTCCTCAAACCTCTTCTTCCAGTCAATCTCTACCCTCTGAGCCTCAAGCCTAAGGTGATTTTCATAGGCTTCCATAACGTTCCTGAAACACATGAATAGAGGGTGCTTGCTCCTCCTCCTTGGATTCAGAGCGGTGTAACACCTCTCTATACCTTCCCTCGCAACGTGCTCGGGCACGCCCATGTCTTCAAGGAGCTTAAGAAAGAGCCTT # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATGCCCTTAAGAAACGAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 14243-14673 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABHJ01000011.1 Hydrogenivirga sp. 128-5-R1-1 1102927038514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 14243 29 86.2 37 ........A.A.C.........A...... GGAACCTTTTCTCTGAAATTGAAGAGGGAGCTCTTCT 14309 29 86.2 36 ........A.A.C.........A...... TCTCACTTAACATGAAGACCTGATTTGTGTAGTCCG 14374 29 100.0 36 ............................. AATAGTCTCCCGAGAGCAAATATTGAAAGACCCTGA 14439 29 96.6 38 ......................A...... CCTCGTCCCAGATGTGCGCTCTCTCTTCTCCGTCCCGG 14506 29 100.0 38 ............................. GAAGCGCTCCTCTTTCAGCATATAGGATTTCAGCTCGC 14573 29 100.0 43 ............................. TTTCGTTGGGGGCGAAGGCGTGAGGCGTGAGCCGAGCCCCCAA 14645 29 93.1 0 .......G..........A.......... | ========== ====== ====== ====== ============================= =========================================== ================== 7 29 94.6 38 GTTTTAAATGTATAGAGAGGACGCGGGAG # Left flank : CCTGCCGGTTTCAAGCAAGAGGAGTTTAAACTTAACCTTCTCCCTCTTCGCTGTTAGTTTCAGCACCTTGTTCATCGCTCACCTCCAGAATCCCGAGCTTTCTTATCCTCCTCATCTCCACCAGCTCCCTTGTGATTATTTCAGAGAGTGTCTTCCCCTCTTTAACGCTTTTTATCTTTAACTCTTCCCACAGCTCTTTGGGAAGCGTTATAGAGGTCTTTACCATTTTTGTTTTGCTCGGCTTCTTCTTCCTTCCCATAGGTATTATGATAGGCTTTCGGCTTCAAGAAATCAAGATTTCTTAGAATTAAGAAATAAAAATTCTTGACAAAAATGCGGAGCGGGAATAAACTATTTCATAAGCGGGACACAGGTGCCCGCCGGCTCCTTGACAACTGAATAGGCAGGATTGACGATTTTCGGAAATTAACTTCATTTGCGGGAACGTGCATATCTGTGAATGTCTGTCCCCCAAGTATTGGAGAAGCTGGTGGCTTGGG # Right flank : GGTGTTAGAACACGGCATCATAGAGGAGCTGAGCGAGTTTTAAAAGAACGAAGAGACCCACGTGACAAAAGTATCTCAGGGCACACTCCCGGTGCCCGTGCCCAAGCCTGTTCTGTTCGCAGAACGGGTGGGAGGCGCAAGTCCTCTCTTCAATTCAAATTCACGTTCACATCTCCTCGTTAGGGAAGAACATCTCCCAGGCTTCTCTGTCTTTCTGTCTCCTTATCCTGGGCTTTAGATTTACCTCTATCACAAACCTCTCAAAGTCGCTCAAGCTCTCCCTGTCTTCGTTGTATCTGTCTATCATCTCAAGTATCCTCCTTATGCCGAGTCCGTGGACCATGTCTTGAAGGTAGGCGACAACCATACCTTCTCTGTCTCTCTGTCTCAGCTCCTCTTCGCTTATCTCACCCTTCCGAAGAGCCTCTTTATACTTCTTAACCTCCTTGAAATACCACCTTCGGAACTCCTCTCTTTCTCTTGCCCACTCCTCTTCCGTG # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAATGTATAGAGAGGACGCGGGAG # Alternate repeat : GTTTTAAAAGAACAGAGAGGACACGGGAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 79252-78852 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABHJ01000006.1 Hydrogenivirga sp. 128-5-R1-1 1102927038496, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 79251 35 100.0 36 ................................... ATATCATCATCATAACCCCTTCTTAGCAAAAATCTT 79180 35 100.0 39 ................................... AGCGCGGATAGGCCCCTTGTACAGGTGCTACCCTAACCT 79106 35 100.0 40 ................................... TATTGAGACCTTTAACTTTTTAACGAGGGCAGATGAAATC 79031 35 94.3 39 ................G..G............... CCAAGCCTCAAACGGAATGCCGTAAATGTGCCCACGATA 78957 35 91.4 36 ................G..GT.............. ATCCTTATACGACCTTATCACCATGCCTCGTACCTC 78886 35 82.9 0 ................G..........T..TAT.A | ========== ====== ====== ====== =================================== ======================================== ================== 6 35 94.8 38 CTTGAAATGCCCTTAAAAAACTGAGGGATTGCGAC # Left flank : CCGAAAGCGATGTGGTCAGCGTCCTCCCAGAGATAGTGGAGCTCATATCCCGTGAGAGCAGGGACGAATACATGAGAACGGGAAAGCTCCCCGTCCTATACTGGGAAGTTGAGCCCGAACCCGACGAGGAGACCGTAGTTAAGAGGTGAAAGTTTAAGAGCCTTTTTTTACCCCCTTCTCTCTCAATAGTTTGAAGCGTGCAACCAAAAGACGTTCATGAAATTACGTAAGTCTTTGATGTCTCTGCGAGAATAACCTTGTATGACGGAAATCATATTGAAAATTTCGGGCTGTGTGCTTAACTTATTGGCAGTTAATAGCGGGACGCAAGTGCCCGCCGGCTCCTTGACAACCGAATAAGGCTTAAAAAGGGCTCAAAGCTTAGAGCGACAAAGCCCAGAAGGAACTCTTTGATAATTCTGAATTTTTGTGACACCATGTTTAATTGCGAACAATTCTCACTCTGGGTGCTTTGTCTCTCAATAAGTTGAGATTTACCC # Right flank : CCTCCCCTTTGTGTCTTAGCCCTATAAAATAGTTTTCTGAGGTCATGAAGAGCCTTATATCTGTCAGGGAGCTGAGTCGGGAAGATGTTGAGGGGATAATTGAGAGAGCTTCACGCTTCAAGGGGGGAGAGAGGACTTCCCTTAAGGGTAACGTTGCCCTTCTTTTCCTTGAACCATCAACTAGAACCCGTATATCCTTTGAAAGAGCCTGCAGGGAGCTCGGTCTGGATACCTACACGGTGCTCGGCGAGAGTAGCTCTCTCTCAAAGGGTGAGAGCTTTACCGATACTCTTAAGACCTTTGAAGCGCTCGGTTTCGGCGCGGTGGTCTTCAGGGTGCCCTTCGTGCTCTTCCCCTACGATAATCTTACGGACTCTCTGAACTTGTCCCTCGTGAACGCTGGAGACTCCACCCACCAGCACCCCACCCAGGGGCTTATAGACCTGCTTACCCTGAAGGAAGCCTTCGGTTCCCTTGAAGGACTCAAAGTCCTGTACGTG # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATGCCCTTAAAAAACTGAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 173484-172856 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABHJ01000003.1 Hydrogenivirga sp. 128-5-R1-1 1102927038502, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 173483 29 100.0 37 ............................. GCCAAGAACATAGTCAAAGGAACAGCCCTTTACGAAC 173417 29 100.0 37 ............................. TGTATATCCCGAACCTTACCCGTTGCCCTTCCCATTC 173351 29 100.0 39 ............................. TCTTTTTCCTCAATTACGGGATAGAAAAATTTTTCCTTG 173283 29 100.0 36 ............................. TAAAAACTTTGGGGACGAACTTGTATCTCAGTATTC 173218 29 100.0 36 ............................. AAATTTGCTGAGCGTATTACCCAAACGGATAAAGCG 173153 29 100.0 36 ............................. TAGCTACTACCTCCTTAAGAAATTTTTAATACACTT 173088 29 100.0 41 ............................. CGGGATATACCTAACAGCTTTATACGCAAAGGTGTCATATA 173018 29 100.0 37 ............................. TTCGTCAAATAAGGCTCTATATTCACCAGCTTTATTA 172952 29 100.0 39 ............................. GTTCTCAAACATCCTCGCCAGCCGGACGTTGTCTATCAT 172884 29 75.9 0 .....................TA.ACGCC | ========== ====== ====== ====== ============================= ========================================= ================== 10 29 97.6 38 GTTCTAATGTGCCGTTGTGGAGTTGAAAG # Left flank : ACTGCTTACGGACGTGCCTGATCTGACAGACAATATCCTGTAAGGTTAGGGGTCAACCATGTTTAGCTTGGAACGAAGGTCTTTTAACTCCTTTAGCTTCTTGGCGATAAGCTCTCCCATGGTGGTCTTCTTCTTGATGCTTTCTATCCTCAGCTCTTCCCACACATCCTTGGGCAGGGAGACAGTAGTTCTGACGTAGCCTCTTTTCTTTTTCCTCATACTAATAATGCTATACTATTAGAGGCATTAGCAGGACGTAAGAGCCTGCCGGCTCCTTGACAACTGAATAGGGTGTAGCGGTTTATGGTGCATCAAAATGCCTTGATGTTTTGATGCCTTGATGATACCCTTCTGAGCTTATTGACTTGCAAGGGCTGGAAGCACCTAATTTTTGACCCTTTTTGCAGGACTGACGATTTTCGGAAATTAACTTCATTTGCGAAGACAGGGTGTTGCGTAATTCTTTGATTTGGCTTATATTATTGGACGGCTCGTTTGGG # Right flank : CACATTGCCTATTTCCCGCCGTAATCAGAGGAAGTTTTCTACAGGCTCAAAACACGTTGACAAACCAATTTTGAGATTGTATCTTAATATCATAATAGGAGGTAGTTAGGATGAACATGGAGGCGCTCCAGCTCGGTCAGGAATTCACTGTAAAGCACATCAGAGACAAAGATAACCCCATAATGAGAAAGCTGTATGCTATGGGTTTAAAAGAGGGTAAGAGGGCTAAGCTCCTTCTCAAGAACGGTAGAGTTTATCTGCTGCGTCTAAATAACTCAAGGCTGATAATAGATAGAGACCTTGCCAGGTTCATAGAAGTCGCCTAACTATGCCTCCTCTTTCTGGTGCCTTTTTGAGATTTTGTCTCAAAATTGTGCTCCTCTTTACGCTCGTTACTCAGTCATACGCCTACTTCCCCTTTATGGGAGAAGATGCCCAGACTATAGGGCGACCTTTCGGCTTTGAGCTTGAGAACAACCTTACCTATTTCAGGTATTACG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAATGTGCCGTTGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 192771-193806 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABHJ01000003.1 Hydrogenivirga sp. 128-5-R1-1 1102927038502, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 192771 29 100.0 37 ............................. AGTCTCATATTTGGGATTTAGAAAAGGAGGTGAGCAA 192837 29 100.0 37 ............................. TACCGTAGTCTATGAATACGAAATAGCGGGGTAAGGT 192903 29 100.0 40 ............................. GAAGCTTACAGTTGAGAACTGGGAGGAGTGGTTCGAGAGA 192972 29 100.0 40 ............................. TTCCGCCTCAACGATAAATTGATATTCAGTAGGAAGTTTT 193041 29 100.0 38 ............................. TCCCCTAACCCCAAGCCCATCCTTGCGGGAATGATTGT 193108 29 100.0 37 ............................. TACCGTAGTCTATGAATACGAAATAGCGGGGTAAGGT 193174 29 100.0 40 ............................. GAAGCTTACAGTTGAGAACTGGGAGGAGTGGTTCGAGAGA 193243 29 100.0 40 ............................. TTCCGCCTCAACGATAAATTGATATTCAGTAGGAAGTTTT 193312 29 100.0 38 ............................. TCCCCTAACCCCAAGCCCATCCTTGCGGGAATGATTGT 193379 29 100.0 36 ............................. TCCTCAGGTCTGAGATAAGAACAAGGGCTACCGAAA 193444 29 100.0 37 ............................. AGCACATGAAGAAGGGGAAGATGAGCGACGAGGAAAA 193510 29 100.0 40 ............................. ACTGAGGTATCAAGCTATCCTGCAGCCGAGCAACAGGCTT 193579 29 100.0 37 ............................. TATACACCGATGTACACCCTTTGCCTCGGCTTGAACT 193645 29 100.0 37 ............................. TCCAGCCACACAACTTCGGTCGGGAAAAAGCAGAAGA 193711 29 100.0 38 ............................. TAATGGCATCCATAGCCTGCTTTGCCTTGCTCTGGCTC 193778 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 16 29 100.0 38 GTTCTAATGTGCCGTTGTGGAGTTGAAAG # Left flank : TGTTAGAAAGCACACCTCAAGGCTATCTCCCAAACGTCTGCCGATGAAAGGTCTCCTATTTCTCGGCGGTTCACCTTTAGCTTCCCTACCCCTTATGCCCAAATCCGTATCCAATAGTTCTTCAAGGAAGCGCAACTTTTCTTGATGAAAGAATCCCAAAAATTTATACCCTCTTTCTTCTACAATTTGCCTGTATATTTCCTCCAACCCCTCCATCGCAATCTATGATATAAAATTTTTAAGGTTGTAGCAGGACATAAGAGCCTGCCGGCTCCTTGACAACTGAATAGGGCGGAAGAATTTAAGGTGCATCAAAATGCCTTGATGTTTTGATGCCTTGATGACACCCTTCTGAGTTTATTGCCTTGCAAGGGCTGGAAGTGCCTAATTTTTGAGCCTTTTTGCAAGACTGAGCATTTCCGGAAATTAACTTCATTTGCGAAGACAGGATGTTGCGTAATTCGTTGATTTAGCTTATATTATTGGACGGCTCGTTTGGG # Right flank : GGAACTCTCCAGTCCGGATTTCTCACCTGATTGGACAGAATGACCCTATTTATCTTTGTTCCTTTTACAAAAACCTCAAAGGGTAGTCTTTAGCTTTTTAGATTATCATAACAAATATACCGAGGGAGGTTTTCTCATTGTACTTTTTTTAGACTTAAGCACAGAGCCGGACTCCTCATGCTTGCTCATATCCCATTTGAGGATTAAAGGTAAGCCACACTATACCACCTCCATCGGGTATGTGTTTACCAGGGTTCATTTCCCTCCCTTTTGCCCCAGTCAACCTCGCTATGAAGGTTTTCAGGAGTTATTCTATCCAGGAGCTCATCCAAATTCCTGCTTCTTTCGGGCTTAATCACTATTCCTTCTCTGCTTATCTCAATAATAAGTTTTGAACCTTGATGTAGATTCAATAGCCTGACTATATCTGCAGGAATCTTCACTGCCATACTGTTTCCCCATCTTTGAAGTTTTGTTTTATACATAATGTTTTGAAGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAATGTGCCGTTGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 44503-45070 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABHJ01000005.1 Hydrogenivirga sp. 128-5-R1-1 1102927038515, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 44503 30 100.0 38 .............................. TGTTGTTTATTCCAGTTGCTATTGGTTTCGTTGTTTTT 44571 30 100.0 37 .............................. TTTTCTGTGCTCGGAGAGCCACTGCCTACAATCACAA 44638 30 100.0 37 .............................. AAGCTGGAGGCGAGGAAGTGATAGGGCTTGTGTTCGG 44705 30 100.0 37 .............................. CCTCAGCGGTGAAGGAGACCGTTGCGGTCGCTCCTGC 44772 30 100.0 35 .............................. TTTCAACATTGTTAATAAATCCCCTGAAGACTTCA 44837 30 100.0 36 .............................. AAAATCTGCGTATCAGGGCTGATGGCTATGTTCATG 44903 30 100.0 37 .............................. TCCAGCCTCAGCTTTCTCTCTACATCTTCGGGGTCGT 44970 30 100.0 38 .............................. AGGGGTCTTACGTTTTTCCCTCTTCCCTTCCTTATTTA 45038 30 93.3 0 .......................C...T.. | GCT [45059] ========== ====== ====== ====== ============================== ====================================== ================== 9 30 99.3 37 GTTTATTAAGTACCTATAAGGGATTGAAAC # Left flank : GTTGAATGCTACAAGCTTTACAAGCACTTCATGGAAGAGGGGGTTTATACACCTTTCCTCGGAGAGTGGTAATGTTCGTAATACTGGTCTATGATGTCAAGGAAGAGAGAGTCGGCAAGGCTCTTAAAATATGCAGAAGGTATCTGACCCACGTTCAGAACTCGGTATTTGAGGGAGAGACAAGTGAAGCTAAACTCAGGATGTTGAAAGACGAGCTAAAGTCAATCCTTGATGAAAACTACGACTCTGTAATTATCTACAAATTCCGAACCAAGCACTACTACGAGCGCGAAAGCATAGGTGTAGATAAACCCTCCCATGAAGACTTCATAGTGTAGCTCTCCCAACACTTCTGTCTATCCTAATGGGTTTTTGCAGGATTGGAGATGGACAGGGAACGAACTCAATTTGACGAATCTTGGATGTGGGGATAAAATTTCCATGTAGTCCTACGGGACTGCCGGGTTCCTTGGTAATGGAATAGGCTTATTAGTTAGCTG # Right flank : CCCCTATCTGCATAACTATGTCAAGATAGGGTCAGTGACGCAAATGACGCAAAAATTTTGGTTAGTGACGCAAAAATAGTTTTTGCGTCATAGGTTTTTTATACGAATACCAATAGCTTATGGTTTTTCATGACGCAAAAAGGGGGTCTTTCAGTACATCTGGTAAGGTATGTGATAGAGCCCAGGGAGGTCGGGAAATTCCTGTGTATCAAAGGGTCAAGCCCTGTGGCGTAAAATTCCCTCGTGTAGTGACACAAAGGCTGAGAGTGACGTAGTGGGAAGAGAGAATTTTCCGTCTTTTGCGTCATGGATATGTGTAAGTTGTTGATATGCGGGGATTGTTCTTATGACGCAAAAGGGTTTTTATCCGTCACCTGTTATAGGTTTTGCGTCTCGGGGCGGTCAAGTGGTTTGGAGACAGGGGAGGTGACGGTAATGACGCAAAACTCCTTTTTACGTCATAAGGGGTGACGCAAAAGGTTCCCTTCTTTGCGTCACTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATTAAGTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 840-274 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABHJ01000474.1 Hydrogenivirga sp. 128-5-R1-1 1102927038045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 839 30 100.0 38 .............................. TAATAAAAATTTTCATTTGCTAATCCAAATGTTTTGTT 771 30 100.0 36 .............................. AATTCTCTTGCTATCTGTCCGAGTATTCTGTATGTT 705 30 100.0 36 .............................. AGCCCTCTATATTTTCAAATCTGCCCATATGTCAGG 639 30 100.0 37 .............................. ACTCTCTCCAGATATTTCCGTCTTCTGTGGTTGGAGT 572 30 100.0 39 .............................. GCTTCTCTCTGTTTTTTAAGTCTTCCGTGGTTTCCTACC 503 30 100.0 36 .............................. GCTTTATAAAAAATGTAGGGTCAGCTCCTAAATGTG 437 30 100.0 36 .............................. AATAAATTGGCATTTCAGGTGTAAAATATTCAGGAT 371 30 100.0 37 .............................. ATTGGTAAGTTCATACTTGGAAATGCTTTTTGTAATT 304 30 93.3 0 ...........................GG. | T [276] ========== ====== ====== ====== ============================== ======================================= ================== 9 30 99.3 37 GTTTTTAGAGTGCCTATAAGGAATTGAAAC # Left flank : AATTTATATAGGTTATACAATTTATATTATTTTTTGATTTTCTTCAATTACTTAGATCTTTTCAAAAATTCAAAAAATCTGAGTCTGTCAATCGCAGATTTTTGAACCTTAATTGAGACAAAATCTCACAGGAAATTTGGCTAAAATTTAAATCTCGGCTTTGTATACCAAAGGTTTGTCGATCCCCGGGGATTTTTGCGAGATTGGAGGTCGACTGAAAATTAAATCAATTTGACAAGGACTATAATTTTTCGTATATTTAATTTCAATAAGATATATCAACGGCTATTTGACAATAGAATATGAAATCAATTTCAGG # Right flank : CTAATATGTAGTGATTATAAAAATGAAATCTTTATAAATTTCTTTCAGATAATTTGACAAAGTTTTGATATGTATCCTGAATATTCAATCAGAAACTTTCCATGTTTTTATAATACTTACTTTATTCTTTTGTTCTTATGATTTTGTATCCAAAATCCAGTTCCAGAGTGTTGTCTGGTGGAAGGACAAACTCCCAGATAATCTTGCCGTTGGCTTCCAATTTTTTCCATTTTTTTGAGGATATAGGCTGAATTTCTTCTTTTTCTGTTCTCTG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTGCCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 257892-258859 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABHJ01000001.1 Hydrogenivirga sp. 128-5-R1-1 1102927038497, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================= ================== 257892 29 100.0 37 ............................. TTCACCAGCACCTTCATTTTATAAAAGTCGGGTTCGG 257958 29 100.0 39 ............................. CAATTCAGAACCCTGTTTTATATACGGCTGGATTATTGA 258026 29 100.0 37 ............................. AGGAAGGACTTCCTTTTCGTGGGGGACAGCGAAAGGG 258092 29 100.0 36 ............................. GGAGCTTTGACACGAACTGTGCCGTAGACTCGTGCC 258157 29 100.0 45 ............................. GAGTTCCTCCGTCCTTCTTTTGTTCCTTACGAGACCTTGACTTAG 258231 29 100.0 38 ............................. AGTATGAGTTTGTGGGTGGCATAAGAATGCGTGTTCCG 258298 29 100.0 36 ............................. CTCCCCTCCTATCTCACAGGATATAGACCTTACCTT 258363 29 100.0 42 ............................. CTCTGCTTCGGTTGATGTAAGACCACTACCATAAACCGTTGA 258434 29 96.6 38 ........G.................... TTCTACCCTTTCCGGATATACGGTTTGCTTTCTTCTTG 258501 29 96.6 35 ........G.................... CCTTATATATGTAAGTATTCTCTGTAAGTAATCTA 258565 29 100.0 37 ............................. GTCTTTCTTTTCCTCTACCCTTCTCTTGAAGTACTCG 258631 29 100.0 37 ............................. GTCTTTCTTTTCCTCTACCCTTCTCTTGAAGTACTCG 258697 29 100.0 39 ............................. AGAAGACCATAGAAGAAGGGGCTAAGAAGGTTCAGGAGA 258765 29 100.0 37 ............................. TTATTTATCCTAAATATTTCATTGATTATCTTCTTAA 258831 29 86.2 0 ........G.......A......A....A | ========== ====== ====== ====== ============================= ============================================= ================== 15 29 98.6 38 GTTCTAATATGCCGTTGTGGAGTTGAAAG # Left flank : GCGATGAGTATAAAGGGGAAGTTTTACCTCCTGGGGTGCATAGGAGAGTCGTTGTGGAAGCTGGAAGGGGGATGTGCTGGTATAGATACGTTGGGACTGAGGGCTTGGTTATATCTATGGAGACCTTCGGTAAGTCTGCCCCCGGAAAAGCTCTCTTTGAGCACTTTGGGTTTACACCCGAAGCGGTGGCTAAAAAGGTAATTGAAAGATGGTTTTCTTGAAGGCTGAGTTTATAATATAACCGAGTAAGCAGGACGTAAGAGCCTGCCGGCTCCTTGACAATTGAATAGGGCGGAAGGATTTAAGGCGCATCAAAATGTCTTGATGTTTTGATACCTTGATGATACCCTCCTGAGCTTATTGACATACAAGAATTGGAAGCGCCTAATTTTTGACCCCTTATGCAGGACTGACGATTTTCGGAAATTAACTTCATTTGCGAAGACAGGGTGTTGCGTAATTCGTTGATTTAGCTTATATTATTGGACGGCTTGTTTGGG # Right flank : AATAATAAAGAGAGAGCCGGGTATGAAGTCAGGCAAAAATCCTAATGTGCCGTGTGGAAGTTATATAAGTACAAACTCGTCAAAGCTTGTTCTTTCTATCCGTACCCCTGTAGCCCACCATGTCTTTGATGGCTTCTGCGAACTCTCTTATCTCTTTTTGGGCGCCTTCGTGGGTTCTGAGGGTTATGAAGTTGTCAAGGGCTATCCTCGGAACCGTCCAGTAGTAGCGGGTCTTCATGAATTGAGGGAGTATCCCTCTCGCAAGCTCCTTAGCCACTTCCTTTTCCGTCATCTTCTCATACAGAGCGTAGCTCTGTCCTATGATCCTATCTATCTCCTCAAGGAACTCCCTGTGGTACGGATCTTCCACCGGTTCGTCTATGGAAGCCTGCTTGTTGGACTTTGCCTGCTTCCTGAGAATGTCGGGAATGTAGAACTTTATGTCGTAGGCGGTGTATCTCCTGCTTATCTCGTTGTAGGATCCGAACCTGTGCCTGTGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAATATGCCGTTGTGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //